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The map label for this gene is smpB [H]

Identifier: 94310398

GI number: 94310398

Start: 1578203

End: 1578655

Strand: Reverse

Name: smpB [H]

Synonym: Rmet_1456

Alternate gene names: 94310398

Gene position: 1578655-1578203 (Counterclockwise)

Preceding gene: 94310401

Following gene: 94310394

Centisome position: 40.19

GC content: 58.94

Gene sequence:

>453_bases
ATGACGATCGCTGACAACAAGAAGGCCTTTTTCGACTACTTCATCGAAGAGCGCTATGAGGCCGGGATCGTGCTCGAAGG
CTGGGAGGTCAAGGCGATTCGCGCCGGGCGTGTGCAGATCAAGGAAGGCTACGTCGTGGTACGCGACGCGGAAATGTTCC
TGATCGGCGCCCATATCAGCCCACTACAAAGCGCCTCCACCCACATCAATCCGGACCCGGTGCGCACGCGCAAGCTGCTG
CTCAAGGCCGACGAGATCAAAAAGCTGATCGGCAAGGTCGAGCAGCGCGGCTATACGTTGGTGCCGCTGAATCTGCACTA
CACGCGCGGCCGCGTCAAATGCGAGATCGGGCTGGCCAAGGGCAAGAAGCAGTTTGACAAGCGCGAAACAGAAAAGAACC
GCGACTGGGATCGCGAGAAGGCTCGCATCATGAAGGGCGGCGTGAAGGAATGA

Upstream 100 bases:

>100_bases
CGCGCGTACGGCACGTCCGGCGCCCGCCGCACCCACCCCGGCTGACTTACGCTGTCGCCCAAGACCGGCGCGACAAATAT
CTTCAGGAACCACTTCCCGC

Downstream 100 bases:

>100_bases
TGGCTGCGCAGCATAAGCAATAAACAAAAACGGAGGCATGAGCCTCCGTTTTTGTTTCTGCCAACCTATTGGTCCCATGC
GGCACTCAGACTGCCTTCTC

Product: SsrA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 150; Mature: 149

Protein sequence:

>150_residues
MTIADNKKAFFDYFIEERYEAGIVLEGWEVKAIRAGRVQIKEGYVVVRDAEMFLIGAHISPLQSASTHINPDPVRTRKLL
LKADEIKKLIGKVEQRGYTLVPLNLHYTRGRVKCEIGLAKGKKQFDKRETEKNRDWDREKARIMKGGVKE

Sequences:

>Translated_150_residues
MTIADNKKAFFDYFIEERYEAGIVLEGWEVKAIRAGRVQIKEGYVVVRDAEMFLIGAHISPLQSASTHINPDPVRTRKLL
LKADEIKKLIGKVEQRGYTLVPLNLHYTRGRVKCEIGLAKGKKQFDKRETEKNRDWDREKARIMKGGVKE
>Mature_149_residues
TIADNKKAFFDYFIEERYEAGIVLEGWEVKAIRAGRVQIKEGYVVVRDAEMFLIGAHISPLQSASTHINPDPVRTRKLLL
KADEIKKLIGKVEQRGYTLVPLNLHYTRGRVKCEIGLAKGKKQFDKRETEKNRDWDREKARIMKGGVKE

Specific function: Binds specifically to the ssrA RNA (tmRNA) and is required for stable association of ssrA with ribosomes [H]

COG id: COG0691

COG function: function code O; tmRNA-binding protein

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the smpB family [H]

Homologues:

Organism=Escherichia coli, GI1788973, Length=146, Percent_Identity=54.1095890410959, Blast_Score=166, Evalue=8e-43,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000037
- InterPro:   IPR020081
- ProDom:   PD004488 [H]

Pfam domain/function: PF01668 SmpB [H]

EC number: NA

Molecular weight: Translated: 17301; Mature: 17170

Theoretical pI: Translated: 10.26; Mature: 10.26

Prosite motif: PS01317 SSRP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIADNKKAFFDYFIEERYEAGIVLEGWEVKAIRAGRVQIKEGYVVVRDAEMFLIGAHIS
CCCCCCCHHHHHHHHHHHCCCCEEEECCEEEEEECCEEEEECCEEEEEECEEEEEECCCC
PLQSASTHINPDPVRTRKLLLKADEIKKLIGKVEQRGYTLVPLNLHYTRGRVKCEIGLAK
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCEEEEEEECCC
GKKQFDKRETEKNRDWDREKARIMKGGVKE
CHHHHHHHHHHCCCCCCHHHHHHHCCCCCC
>Mature Secondary Structure 
TIADNKKAFFDYFIEERYEAGIVLEGWEVKAIRAGRVQIKEGYVVVRDAEMFLIGAHIS
CCCCCCHHHHHHHHHHHCCCCEEEECCEEEEEECCEEEEECCEEEEEECEEEEEECCCC
PLQSASTHINPDPVRTRKLLLKADEIKKLIGKVEQRGYTLVPLNLHYTRGRVKCEIGLAK
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCEEEEEEECCC
GKKQFDKRETEKNRDWDREKARIMKGGVKE
CHHHHHHHHHHCCCCCCHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA