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The map label for this gene is ybbK [H]

Identifier: 94310397

GI number: 94310397

Start: 1577179

End: 1578117

Strand: Direct

Name: ybbK [H]

Synonym: Rmet_1455

Alternate gene names: 94310397

Gene position: 1577179-1578117 (Clockwise)

Preceding gene: 94310396

Following gene: 335055526

Centisome position: 40.15

GC content: 59.64

Gene sequence:

>939_bases
ATGCTTGCCTATCAGCTAGGTTTGTTTCCGCTGATCCTGCTCATTGCCGCCATCGTGCTGATTGCGAAGTCGGTCAAGAT
CGTGCCGCAGCAGCACGCGTGGGTACTGGAGCGTCTGGGGCGCTATCACGCCACGCTGACACCAGGCCTCACCGTCGTCG
TGCCTTTCATCGATCGAGTGGCCTACAAGCACATCCTCAAGGAAATTCCGCTCGATGTGCCTAGCCAGGTTTGCATTACG
AAGGACAACACGCAATTGCAGGTGGATGGTGTGCTGTACTTCCAGGTGACTGACCCGATGAAGGCGTCCTATGGCTCGAG
CAATTTCGTAGTGGCCATTACGCAACTGTCACAGACCACGCTGCGCTCGGTGATCGGCAAGCTGGAACTCGATAAGACCT
TCGAGGAGCGCGAGTTCATCAACCACAGCGTGGTCAATGCGCTGGATGAGGCCGCGGCAAACTGGGGGGTGAAGGTGCTG
CGCTACGAGATCAAGGATCTGACGCCGCCCAAGGAAATTCTCCATGCCATGCAGGCGCAGATCACTGCCGAGCGCGAGAA
GCGCGCGCTGATTGCTGCATCGGAAGGCAAGCGGCAGGAGCAGATCAATCTGGCGTCTGGCGCGCGCGAGGCGGCGATCC
AGAAGTCAGAGGGTGAAAGGCAGGCGGCTATCAACAAGGCCCAAGGTGAGGCGGCCGCGATTCTGGCCGTGGCCGAGGCA
AATGCGCAGGCGATCGAGAAAATCGGTCACGCGATCCGGGGGGAGGGCGGTTCCGAGGCAGTCAACCTCAAGGTCGCGGA
GGAGTATGTGGCGGCGTTTGGCAACCTGGCCAAGCAGGGCAACACATTGATCGTGCCGGGCAACCTTGGTGAGATGAGTT
CGATGATCGCGTCCGCGCTGCAGATCGTGAAGGGCCAGAAGATGGAGAAGGCAGTCTGA

Upstream 100 bases:

>100_bases
GTCGAAGTGCGTGGTGCCACGTTGATCGTGGCGCGTCACTACACGGCCTGACTTCTTCCGCATTACCCAGTCGTCAATCC
TCTCGAAGGGAGTCGTATAT

Downstream 100 bases:

>100_bases
GTGCCGCATGGGACCAATAGGTTGGCAGAAACAAAAACGGAGGCTCATGCCTCCGTTTTTGTTTATTGCTTATGCTGCGC
AGCCATCATTCCTTCACGCC

Product: putative protease, membrane anchored

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 312; Mature: 312

Protein sequence:

>312_residues
MLAYQLGLFPLILLIAAIVLIAKSVKIVPQQHAWVLERLGRYHATLTPGLTVVVPFIDRVAYKHILKEIPLDVPSQVCIT
KDNTQLQVDGVLYFQVTDPMKASYGSSNFVVAITQLSQTTLRSVIGKLELDKTFEEREFINHSVVNALDEAAANWGVKVL
RYEIKDLTPPKEILHAMQAQITAEREKRALIAASEGKRQEQINLASGAREAAIQKSEGERQAAINKAQGEAAAILAVAEA
NAQAIEKIGHAIRGEGGSEAVNLKVAEEYVAAFGNLAKQGNTLIVPGNLGEMSSMIASALQIVKGQKMEKAV

Sequences:

>Translated_312_residues
MLAYQLGLFPLILLIAAIVLIAKSVKIVPQQHAWVLERLGRYHATLTPGLTVVVPFIDRVAYKHILKEIPLDVPSQVCIT
KDNTQLQVDGVLYFQVTDPMKASYGSSNFVVAITQLSQTTLRSVIGKLELDKTFEEREFINHSVVNALDEAAANWGVKVL
RYEIKDLTPPKEILHAMQAQITAEREKRALIAASEGKRQEQINLASGAREAAIQKSEGERQAAINKAQGEAAAILAVAEA
NAQAIEKIGHAIRGEGGSEAVNLKVAEEYVAAFGNLAKQGNTLIVPGNLGEMSSMIASALQIVKGQKMEKAV
>Mature_312_residues
MLAYQLGLFPLILLIAAIVLIAKSVKIVPQQHAWVLERLGRYHATLTPGLTVVVPFIDRVAYKHILKEIPLDVPSQVCIT
KDNTQLQVDGVLYFQVTDPMKASYGSSNFVVAITQLSQTTLRSVIGKLELDKTFEEREFINHSVVNALDEAAANWGVKVL
RYEIKDLTPPKEILHAMQAQITAEREKRALIAASEGKRQEQINLASGAREAAIQKSEGERQAAINKAQGEAAAILAVAEA
NAQAIEKIGHAIRGEGGSEAVNLKVAEEYVAAFGNLAKQGNTLIVPGNLGEMSSMIASALQIVKGQKMEKAV

Specific function: Unknown

COG id: COG0330

COG function: function code O; Membrane protease subunits, stomatin/prohibitin homologs

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the band 7/mec-2 family [H]

Homologues:

Organism=Homo sapiens, GI7305503, Length=278, Percent_Identity=50, Blast_Score=276, Evalue=2e-74,
Organism=Homo sapiens, GI221316744, Length=206, Percent_Identity=35.9223300970874, Blast_Score=101, Evalue=1e-21,
Organism=Homo sapiens, GI21686995, Length=206, Percent_Identity=35.9223300970874, Blast_Score=101, Evalue=1e-21,
Organism=Homo sapiens, GI38016911, Length=210, Percent_Identity=34.2857142857143, Blast_Score=95, Evalue=6e-20,
Organism=Homo sapiens, GI7657615, Length=187, Percent_Identity=26.2032085561497, Blast_Score=66, Evalue=3e-11,
Organism=Escherichia coli, GI1786697, Length=291, Percent_Identity=42.2680412371134, Blast_Score=231, Evalue=4e-62,
Organism=Escherichia coli, GI1790616, Length=203, Percent_Identity=26.1083743842365, Blast_Score=62, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI32564147, Length=281, Percent_Identity=48.0427046263345, Blast_Score=281, Evalue=3e-76,
Organism=Caenorhabditis elegans, GI17569493, Length=213, Percent_Identity=34.2723004694836, Blast_Score=108, Evalue=3e-24,
Organism=Caenorhabditis elegans, GI193209764, Length=213, Percent_Identity=34.2723004694836, Blast_Score=107, Evalue=8e-24,
Organism=Caenorhabditis elegans, GI17569497, Length=204, Percent_Identity=33.3333333333333, Blast_Score=105, Evalue=2e-23,
Organism=Caenorhabditis elegans, GI193210507, Length=203, Percent_Identity=32.512315270936, Blast_Score=94, Evalue=9e-20,
Organism=Caenorhabditis elegans, GI17570161, Length=203, Percent_Identity=32.512315270936, Blast_Score=94, Evalue=9e-20,
Organism=Caenorhabditis elegans, GI71987612, Length=173, Percent_Identity=34.1040462427746, Blast_Score=92, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI25153583, Length=173, Percent_Identity=34.1040462427746, Blast_Score=91, Evalue=6e-19,
Organism=Caenorhabditis elegans, GI71989955, Length=155, Percent_Identity=35.4838709677419, Blast_Score=91, Evalue=7e-19,
Organism=Caenorhabditis elegans, GI71989948, Length=155, Percent_Identity=35.4838709677419, Blast_Score=91, Evalue=8e-19,
Organism=Caenorhabditis elegans, GI71987621, Length=176, Percent_Identity=33.5227272727273, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17570459, Length=207, Percent_Identity=32.3671497584541, Blast_Score=87, Evalue=9e-18,
Organism=Caenorhabditis elegans, GI17569499, Length=188, Percent_Identity=34.0425531914894, Blast_Score=86, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI32566490, Length=170, Percent_Identity=31.7647058823529, Blast_Score=84, Evalue=8e-17,
Organism=Drosophila melanogaster, GI45550506, Length=282, Percent_Identity=49.645390070922, Blast_Score=272, Evalue=2e-73,
Organism=Drosophila melanogaster, GI45556022, Length=162, Percent_Identity=35.8024691358025, Blast_Score=105, Evalue=6e-23,
Organism=Drosophila melanogaster, GI18860517, Length=204, Percent_Identity=33.3333333333333, Blast_Score=100, Evalue=1e-21,
Organism=Drosophila melanogaster, GI28573263, Length=197, Percent_Identity=27.9187817258883, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI21356845, Length=187, Percent_Identity=27.2727272727273, Blast_Score=82, Evalue=5e-16,
Organism=Drosophila melanogaster, GI62484448, Length=171, Percent_Identity=33.3333333333333, Blast_Score=82, Evalue=5e-16,
Organism=Drosophila melanogaster, GI62484274, Length=172, Percent_Identity=33.1395348837209, Blast_Score=81, Evalue=8e-16,
Organism=Drosophila melanogaster, GI281365664, Length=172, Percent_Identity=33.1395348837209, Blast_Score=81, Evalue=8e-16,
Organism=Drosophila melanogaster, GI281361631, Length=193, Percent_Identity=26.4248704663212, Blast_Score=81, Evalue=9e-16,
Organism=Drosophila melanogaster, GI281361633, Length=193, Percent_Identity=26.4248704663212, Blast_Score=81, Evalue=1e-15,
Organism=Drosophila melanogaster, GI24657857, Length=172, Percent_Identity=33.1395348837209, Blast_Score=80, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001107
- InterPro:   IPR018080
- InterPro:   IPR001972 [H]

Pfam domain/function: PF01145 Band_7 [H]

EC number: NA

Molecular weight: Translated: 33839; Mature: 33839

Theoretical pI: Translated: 7.75; Mature: 7.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLAYQLGLFPLILLIAAIVLIAKSVKIVPQQHAWVLERLGRYHATLTPGLTVVVPFIDRV
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHEECCCCHHHHHHHHHHH
AYKHILKEIPLDVPSQVCITKDNTQLQVDGVLYFQVTDPMKASYGSSNFVVAITQLSQTT
HHHHHHHHCCCCCCCCEEEECCCCEEEEEEEEEEEECCCHHHCCCCCCEEEEEEHHHHHH
LRSVIGKLELDKTFEEREFINHSVVNALDEAAANWGVKVLRYEIKDLTPPKEILHAMQAQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHH
ITAEREKRALIAASEGKRQEQINLASGAREAAIQKSEGERQAAINKAQGEAAAILAVAEA
HHHHHHHHEEEEECCCCCHHHHHHHCCHHHHHHHHCCCHHHHHHHHCCCCCEEEEEEECC
NAQAIEKIGHAIRGEGGSEAVNLKVAEEYVAAFGNLAKQGNTLIVPGNLGEMSSMIASAL
CHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHH
QIVKGQKMEKAV
HHHHCCHHHHCC
>Mature Secondary Structure
MLAYQLGLFPLILLIAAIVLIAKSVKIVPQQHAWVLERLGRYHATLTPGLTVVVPFIDRV
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHEECCCCHHHHHHHHHHH
AYKHILKEIPLDVPSQVCITKDNTQLQVDGVLYFQVTDPMKASYGSSNFVVAITQLSQTT
HHHHHHHHCCCCCCCCEEEECCCCEEEEEEEEEEEECCCHHHCCCCCCEEEEEEHHHHHH
LRSVIGKLELDKTFEEREFINHSVVNALDEAAANWGVKVLRYEIKDLTPPKEILHAMQAQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHH
ITAEREKRALIAASEGKRQEQINLASGAREAAIQKSEGERQAAINKAQGEAAAILAVAEA
HHHHHHHHEEEEECCCCCHHHHHHHCCHHHHHHHHCCCHHHHHHHHCCCCCEEEEEEECC
NAQAIEKIGHAIRGEGGSEAVNLKVAEEYVAAFGNLAKQGNTLIVPGNLGEMSSMIASAL
CHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHH
QIVKGQKMEKAV
HHHHCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]