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The map label for this gene is yhgF [H]

Identifier: 94310177

GI number: 94310177

Start: 1353160

End: 1355523

Strand: Reverse

Name: yhgF [H]

Synonym: Rmet_1232

Alternate gene names: 94310177

Gene position: 1355523-1353160 (Counterclockwise)

Preceding gene: 94310191

Following gene: 335055519

Centisome position: 34.51

GC content: 65.86

Gene sequence:

>2364_bases
ATGTCCAATCTGCCTGCTTCCGTTCTGCAAAAGATTGTGTCGCTGATCGCGGCCGAACTGTCCGTGCAACCCCGCCAGGT
AGCGGCTGCCGTCAACCTTCTGGACGAAGGCGCCACGGTGCCATTCATCGCCCGCTATCGCAAGGAAGTCACGGGCAACC
TGGACGACACGCAGCTTCGCACGCTTGAGGAGCGCCTGCTTTACCTGCGCGACATGGAAGATCGTCGCGCCACGATCCTG
GCGTCGATCGAGGAACAGGGCAAGCTCACCGACGAACTGCGCGCGGCCATTGAAGCGGCCGAGACCAAGCAGACGCTGGA
AGACCTGTACCTGCCCTACAAGCCGCGCCGTCGCACGCGCGCCCAGATCGCCCGTGAATGCGGCCTGGAACCACTTGCGC
AGGCACTGCTGGCCGACCCGACGCTCGATCCCCAAGCCGAGGCCGCCAAGTACGTCAACGGCAACCCCACCGCCGACGGC
GGCGTGCCCGACGTCAAGGCCGCGCTGGACGGCGCGCGCGACATCCTGTCGGAGCAGTTCGGCGAAACGGCGGAACTGCT
CGGCAAGCTGCGCGAGCATCTCTGGAGCAACGGCGTGGTGACGTCCTCCGTCGTGGAGGGCAAGGAAACCGCCGAGGAAG
AGAAATTCCGCGACTACTACCAGTACAGCGAGACGATCCGCACCGTGCCGTCGCACCGCGCGCTGGCGCTGTTCCGCGGC
CGCAACGCGGGCGTGCTGATGGTCAAGCTTGGCCTTGGCGAGGAACAGGACGCGATGGTGCCGCATCCGTGCGAGGGCAT
GATCGCGCGCCACGTCGGCATCCAGAACCAGAATCGCCCCGCCGACAAGTGGCTGGCCGACGTCTGCCGCTGGAGCTGGC
GCGTCAAGGTGCAGCCGCATCTGGAAACCGAACTGCTCACGCAACTGCGCGAGACCGCCGAGGGCGAGGCCATCAAGGTG
TTCGGCCGCAACCTGCACGAGCTGCTGCTGGCCGCGCCGGCCGGCCCGAAATCGGTGATGGGTGTCGACCCGGGCATCCG
CACGGGCTGCAAGATCGCCGTGGTGGACACCACGGGCAAGCTGCTGGAAACGGCAACGATCTACCCGCACGAGCCGCGCC
GCGACTGGAACGGTTCGCTGGCCACGCTGGCACGTCTGGCCAAGCAACACAACGTCGCGCTGTGCTCGATCGGCAACGGC
ACGGCCAGCCGCGAAACGGACAAGCTGGTGCAGGACCTGATGAAGGGCGCGCCCGAGCTGAAGCTCACCAAGATCGTGGT
CAGCGAGGCTGGCGCATCGGTCTACTCGGCCTCGGAACTGGCGGCCAAGGAGTTTCCGGAACTCGACGTGTCGCTGCGCG
GCGCGGTGTCGATCGCCCGCCGGCTGCAGGACCCGCTCGCCGAGCTGGTCAAGATCGACCCGAAATCGATCGGCGTGGGC
CAGTATCAGCATGATGTGAACCAGCGCGAACTCGCGCGTGCGCTGGACGCCGTGGTGGAAGACTGCGTAAATGCGGTGGG
TGTGGACGTCAACACGGCCTCCGCCCCGCTGCTGGCACGTGTCTCGGGCCTGAACTCGGTACTGGCGCGCAATATCGTCG
AATACCGCGACGCCAATGGCGCGTTCTCGAATCGCGATGCGCTGAAGAAGGTGCCGCGCCTGGGCGACAAGACGTTCGAA
CAGGCCGCCGGCTTCCTGCGCGTCAACGACGGGGACAACCCGCTCGACCGCTCGTCGGTGCACCCGGAAGCCTATCCGGT
GGTGCAGCGCATCCTGGATCACATCAAGAAGGGGCTGCCCGATGTGATGGGCAACCGCGACGCCCTGCGCGGCCTGTCGG
CCCAGCAGTTTGCCGATGACACGTTCGGCCTGCCGACCGTGCGCGACATCCTGTCCGAACTCGAAAAGCCGGGCCGCGAC
CCGCGCCCCGAGTTCAAGACCGCGACGTTCCAGGATGGCGTGGAGGACGTCAAGGATCTGCAGCCCGGCATGGTGCTTGA
AGGCGTGGTGACGAATGTGGCGGCCTTCGGCGCGTTCGTCGACATCGGCGTGCATCAGGACGGCCTGGTCCATATCTCGG
CACTTTCGACGAAGTTCGTCAAGGATGCACACGAGGTTGTCAAGGCCGGCCAGATCGTCAAGGTCAAGGTGATGGAAGTG
GACGTCAAGCGCAATCGCATCGGCTTGACGATGCGCCTCGATGACGAGCCGGGCCAGGCTACGGCACGTGCAGGCGGCGC
CGATCGTTCGAATGATCGCGGTGGCCAGCGTAACGGCAGTGGCAAGGGTTCCAACGGCGGCAACCGTCGTGAAGCGGTGC
AGCAAGGCGCGATGGCAGCGGCATTCGCCAAGCTGAAGCGCTAA

Upstream 100 bases:

>100_bases
CCACGTCGGAAAACAGCGGGCACAAAAGGTGTCTCCCCGTCACCAGGCGCGCATCGCGCTTGTGGCACAATGCCCCGCTT
TCGACTGACACGTATTCTCG

Downstream 100 bases:

>100_bases
GTCCGGCAGTTCTCCTCTCCCGCTCGCGGGAGAGGAGGAAAAAACAAAACGCCCCGCAATTGCGGGGCGTTGTCACATCT
GGACCTCGGGAATCAGATTT

Product: putative RNA-binding transcription accessory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 787; Mature: 786

Protein sequence:

>787_residues
MSNLPASVLQKIVSLIAAELSVQPRQVAAAVNLLDEGATVPFIARYRKEVTGNLDDTQLRTLEERLLYLRDMEDRRATIL
ASIEEQGKLTDELRAAIEAAETKQTLEDLYLPYKPRRRTRAQIARECGLEPLAQALLADPTLDPQAEAAKYVNGNPTADG
GVPDVKAALDGARDILSEQFGETAELLGKLREHLWSNGVVTSSVVEGKETAEEEKFRDYYQYSETIRTVPSHRALALFRG
RNAGVLMVKLGLGEEQDAMVPHPCEGMIARHVGIQNQNRPADKWLADVCRWSWRVKVQPHLETELLTQLRETAEGEAIKV
FGRNLHELLLAAPAGPKSVMGVDPGIRTGCKIAVVDTTGKLLETATIYPHEPRRDWNGSLATLARLAKQHNVALCSIGNG
TASRETDKLVQDLMKGAPELKLTKIVVSEAGASVYSASELAAKEFPELDVSLRGAVSIARRLQDPLAELVKIDPKSIGVG
QYQHDVNQRELARALDAVVEDCVNAVGVDVNTASAPLLARVSGLNSVLARNIVEYRDANGAFSNRDALKKVPRLGDKTFE
QAAGFLRVNDGDNPLDRSSVHPEAYPVVQRILDHIKKGLPDVMGNRDALRGLSAQQFADDTFGLPTVRDILSELEKPGRD
PRPEFKTATFQDGVEDVKDLQPGMVLEGVVTNVAAFGAFVDIGVHQDGLVHISALSTKFVKDAHEVVKAGQIVKVKVMEV
DVKRNRIGLTMRLDDEPGQATARAGGADRSNDRGGQRNGSGKGSNGGNRREAVQQGAMAAAFAKLKR

Sequences:

>Translated_787_residues
MSNLPASVLQKIVSLIAAELSVQPRQVAAAVNLLDEGATVPFIARYRKEVTGNLDDTQLRTLEERLLYLRDMEDRRATIL
ASIEEQGKLTDELRAAIEAAETKQTLEDLYLPYKPRRRTRAQIARECGLEPLAQALLADPTLDPQAEAAKYVNGNPTADG
GVPDVKAALDGARDILSEQFGETAELLGKLREHLWSNGVVTSSVVEGKETAEEEKFRDYYQYSETIRTVPSHRALALFRG
RNAGVLMVKLGLGEEQDAMVPHPCEGMIARHVGIQNQNRPADKWLADVCRWSWRVKVQPHLETELLTQLRETAEGEAIKV
FGRNLHELLLAAPAGPKSVMGVDPGIRTGCKIAVVDTTGKLLETATIYPHEPRRDWNGSLATLARLAKQHNVALCSIGNG
TASRETDKLVQDLMKGAPELKLTKIVVSEAGASVYSASELAAKEFPELDVSLRGAVSIARRLQDPLAELVKIDPKSIGVG
QYQHDVNQRELARALDAVVEDCVNAVGVDVNTASAPLLARVSGLNSVLARNIVEYRDANGAFSNRDALKKVPRLGDKTFE
QAAGFLRVNDGDNPLDRSSVHPEAYPVVQRILDHIKKGLPDVMGNRDALRGLSAQQFADDTFGLPTVRDILSELEKPGRD
PRPEFKTATFQDGVEDVKDLQPGMVLEGVVTNVAAFGAFVDIGVHQDGLVHISALSTKFVKDAHEVVKAGQIVKVKVMEV
DVKRNRIGLTMRLDDEPGQATARAGGADRSNDRGGQRNGSGKGSNGGNRREAVQQGAMAAAFAKLKR
>Mature_786_residues
SNLPASVLQKIVSLIAAELSVQPRQVAAAVNLLDEGATVPFIARYRKEVTGNLDDTQLRTLEERLLYLRDMEDRRATILA
SIEEQGKLTDELRAAIEAAETKQTLEDLYLPYKPRRRTRAQIARECGLEPLAQALLADPTLDPQAEAAKYVNGNPTADGG
VPDVKAALDGARDILSEQFGETAELLGKLREHLWSNGVVTSSVVEGKETAEEEKFRDYYQYSETIRTVPSHRALALFRGR
NAGVLMVKLGLGEEQDAMVPHPCEGMIARHVGIQNQNRPADKWLADVCRWSWRVKVQPHLETELLTQLRETAEGEAIKVF
GRNLHELLLAAPAGPKSVMGVDPGIRTGCKIAVVDTTGKLLETATIYPHEPRRDWNGSLATLARLAKQHNVALCSIGNGT
ASRETDKLVQDLMKGAPELKLTKIVVSEAGASVYSASELAAKEFPELDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQ
YQHDVNQRELARALDAVVEDCVNAVGVDVNTASAPLLARVSGLNSVLARNIVEYRDANGAFSNRDALKKVPRLGDKTFEQ
AAGFLRVNDGDNPLDRSSVHPEAYPVVQRILDHIKKGLPDVMGNRDALRGLSAQQFADDTFGLPTVRDILSELEKPGRDP
RPEFKTATFQDGVEDVKDLQPGMVLEGVVTNVAAFGAFVDIGVHQDGLVHISALSTKFVKDAHEVVKAGQIVKVKVMEVD
VKRNRIGLTMRLDDEPGQATARAGGADRSNDRGGQRNGSGKGSNGGNRREAVQQGAMAAAFAKLKR

Specific function: Transcription accessory protein. Exact function not known [H]

COG id: COG2183

COG function: function code K; Transcriptional accessory protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Homo sapiens, GI221136781, Length=800, Percent_Identity=34.75, Blast_Score=402, Evalue=1e-112,
Organism=Homo sapiens, GI27597090, Length=432, Percent_Identity=24.537037037037, Blast_Score=85, Evalue=3e-16,
Organism=Escherichia coli, GI87082262, Length=735, Percent_Identity=64.7619047619048, Blast_Score=942, Evalue=0.0,
Organism=Escherichia coli, GI1787140, Length=88, Percent_Identity=39.7727272727273, Blast_Score=65, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17511129, Length=730, Percent_Identity=29.041095890411, Blast_Score=253, Evalue=2e-67,
Organism=Caenorhabditis elegans, GI17552892, Length=297, Percent_Identity=27.9461279461279, Blast_Score=75, Evalue=1e-13,
Organism=Drosophila melanogaster, GI62484314, Length=776, Percent_Identity=30.6701030927835, Blast_Score=349, Evalue=4e-96,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR022967
- InterPro:   IPR018974
- InterPro:   IPR023097 [H]

Pfam domain/function: PF00575 S1; PF09371 Tex_N [H]

EC number: NA

Molecular weight: Translated: 85629; Mature: 85498

Theoretical pI: Translated: 6.42; Mature: 6.42

Prosite motif: PS50126 S1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNLPASVLQKIVSLIAAELSVQPRQVAAAVNLLDEGATVPFIARYRKEVTGNLDDTQLR
CCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHH
TLEERLLYLRDMEDRRATILASIEEQGKLTDELRAAIEAAETKQTLEDLYLPYKPRRRTR
HHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
AQIARECGLEPLAQALLADPTLDPQAEAAKYVNGNPTADGGVPDVKAALDGARDILSEQF
HHHHHHCCHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
GETAELLGKLREHLWSNGVVTSSVVEGKETAEEEKFRDYYQYSETIRTVPSHRALALFRG
CCHHHHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEC
RNAGVLMVKLGLGEEQDAMVPHPCEGMIARHVGIQNQNRPADKWLADVCRWSWRVKVQPH
CCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHCCCEEEEECCC
LETELLTQLRETAEGEAIKVFGRNLHELLLAAPAGPKSVMGVDPGIRTGCKIAVVDTTGK
HHHHHHHHHHHHCCCCEEEHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCH
LLETATIYPHEPRRDWNGSLATLARLAKQHNVALCSIGNGTASRETDKLVQDLMKGAPEL
HHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHCCCCCC
KLTKIVVSEAGASVYSASELAAKEFPELDVSLRGAVSIARRLQDPLAELVKIDPKSIGVG
CHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
QYQHDVNQRELARALDAVVEDCVNAVGVDVNTASAPLLARVSGLNSVLARNIVEYRDANG
HHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
AFSNRDALKKVPRLGDKTFEQAAGFLRVNDGDNPLDRSSVHPEAYPVVQRILDHIKKGLP
CCCCHHHHHHHHCCCCHHHHHCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCH
DVMGNRDALRGLSAQQFADDTFGLPTVRDILSELEKPGRDPRPEFKTATFQDGVEDVKDL
HHHCCHHHHHCCCHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHC
QPGMVLEGVVTNVAAFGAFVDIGVHQDGLVHISALSTKFVKDAHEVVKAGQIVKVKVMEV
CCCHHHHHHHHHHHHHHHHHEECCCCCCCEEHHHHHHHHHHHHHHHHHCCCEEEEEEEEE
DVKRNRIGLTMRLDDEPGQATARAGGADRSNDRGGQRNGSGKGSNGGNRREAVQQGAMAA
EECCCEEEEEEEECCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
AFAKLKR
HHHHHCC
>Mature Secondary Structure 
SNLPASVLQKIVSLIAAELSVQPRQVAAAVNLLDEGATVPFIARYRKEVTGNLDDTQLR
CCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHH
TLEERLLYLRDMEDRRATILASIEEQGKLTDELRAAIEAAETKQTLEDLYLPYKPRRRTR
HHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
AQIARECGLEPLAQALLADPTLDPQAEAAKYVNGNPTADGGVPDVKAALDGARDILSEQF
HHHHHHCCHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
GETAELLGKLREHLWSNGVVTSSVVEGKETAEEEKFRDYYQYSETIRTVPSHRALALFRG
CCHHHHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEC
RNAGVLMVKLGLGEEQDAMVPHPCEGMIARHVGIQNQNRPADKWLADVCRWSWRVKVQPH
CCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHCCCEEEEECCC
LETELLTQLRETAEGEAIKVFGRNLHELLLAAPAGPKSVMGVDPGIRTGCKIAVVDTTGK
HHHHHHHHHHHHCCCCEEEHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCH
LLETATIYPHEPRRDWNGSLATLARLAKQHNVALCSIGNGTASRETDKLVQDLMKGAPEL
HHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHCCCCCC
KLTKIVVSEAGASVYSASELAAKEFPELDVSLRGAVSIARRLQDPLAELVKIDPKSIGVG
CHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
QYQHDVNQRELARALDAVVEDCVNAVGVDVNTASAPLLARVSGLNSVLARNIVEYRDANG
HHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
AFSNRDALKKVPRLGDKTFEQAAGFLRVNDGDNPLDRSSVHPEAYPVVQRILDHIKKGLP
CCCCHHHHHHHHCCCCHHHHHCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCH
DVMGNRDALRGLSAQQFADDTFGLPTVRDILSELEKPGRDPRPEFKTATFQDGVEDVKDL
HHHCCHHHHHCCCHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHC
QPGMVLEGVVTNVAAFGAFVDIGVHQDGLVHISALSTKFVKDAHEVVKAGQIVKVKVMEV
CCCHHHHHHHHHHHHHHHHHEECCCCCCCEEHHHHHHHHHHHHHHHHHCCCEEEEEEEEE
DVKRNRIGLTMRLDDEPGQATARAGGADRSNDRGGQRNGSGKGSNGGNRREAVQQGAMAA
EECCCEEEEEEEECCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
AFAKLKR
HHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8755871; 12910271 [H]