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The map label for this gene is ureD

Identifier: 94309902

GI number: 94309902

Start: 1043471

End: 1044352

Strand: Direct

Name: ureD

Synonym: Rmet_0957

Alternate gene names: 94309902

Gene position: 1043471-1044352 (Clockwise)

Preceding gene: 94309901

Following gene: 94309903

Centisome position: 26.56

GC content: 68.82

Gene sequence:

>882_bases
ATGCGCCATCCGGATTTTCCATCGCAACTCGCCATGACATCAGCCTGGCATGCCAGCCTGCGCCTGCGCTTTGCCGCACG
CGCCGGCCGGACCGCCATGGTCGAGCGGCGCCACGAGGGGCCGCTGCGGGTGCAGAAGCCGCTCTATCCCGAAGGGGAAA
TTTGCCACGGGGTGGTGCTGCATCCGCCCGCCGGCGTGGCGGGCGGCGATCGTCTCGACATCGACATTGCCGTGGCATCG
GGCGCCCATGCCGTGCTGGCCACACCGGGTGCTACCAAATGGTACAAGTCGCTCGGCCGCGATGCAGCGCAGCATGTGCG
GATCGAGGTGGCGGCCGGCGGGAAGCTCGACTGGCTGCCGCAGGAGAACATCGTGTTCGACGATGCCCGTGCCCGGATCA
CGACGGACGTGGTGGTGGCACCCGGAGGCAGCGCGATCGGCTGGGACGCCGTGGTGCTGGGCCGCCAGGCGTCGGGCGAG
CGATGGGCCAGCGGCGCGTTATGGCTCGACACTCGCGTGGGTGACCCGGACCGCGCGCTGTGGATCGAACAATCGCATTT
CGATGGCGCGTCACCGTTGCGTGGTGCCGTGGCCGGCATGGATGGACTGCATATCCTCGGCACACTCTGGGCGATCGGGC
CGGGCGCCACGCAGGAGCTGGCAGAAGCGCTGGCCGAACATCTGCCATATCGTGCCGATCTACGCGCCGGCGTGACCTGC
CTGGCCGGATATGGCACGGCCACGGCGCAGTCGATGCTGCTGCTGCGCGTGCTTGGCAGCGATATGGAAGCGGTGCGCCA
CCTGATGATCGATGCGTGGACCGTGCTGCGCCAGCCGATGCATGGCGTGCCGGCCAGGCCGCTGCGCCTGTGGTCGACCT
GA

Upstream 100 bases:

>100_bases
TCAAACGACCCTGATGGCTCTCCGGGCACCTTTCTGTGACGGCTGCCACGCGCTATGATCTGGCGCACCGGCCCCCGCCT
GAACCGTCTTGCCATCTTCG

Downstream 100 bases:

>100_bases
GAACCCAATACCTCGAACAACAAGGAATCCGATCATGGAACTGACGCCGCGCGAGAAAGACAAGCTGCTGATCTTCACCG
CCGCGCTACTGGCCGAACGC

Product: Urea amidohydrolase (urease) accessory protein UreD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 293; Mature: 293

Protein sequence:

>293_residues
MRHPDFPSQLAMTSAWHASLRLRFAARAGRTAMVERRHEGPLRVQKPLYPEGEICHGVVLHPPAGVAGGDRLDIDIAVAS
GAHAVLATPGATKWYKSLGRDAAQHVRIEVAAGGKLDWLPQENIVFDDARARITTDVVVAPGGSAIGWDAVVLGRQASGE
RWASGALWLDTRVGDPDRALWIEQSHFDGASPLRGAVAGMDGLHILGTLWAIGPGATQELAEALAEHLPYRADLRAGVTC
LAGYGTATAQSMLLLRVLGSDMEAVRHLMIDAWTVLRQPMHGVPARPLRLWST

Sequences:

>Translated_293_residues
MRHPDFPSQLAMTSAWHASLRLRFAARAGRTAMVERRHEGPLRVQKPLYPEGEICHGVVLHPPAGVAGGDRLDIDIAVAS
GAHAVLATPGATKWYKSLGRDAAQHVRIEVAAGGKLDWLPQENIVFDDARARITTDVVVAPGGSAIGWDAVVLGRQASGE
RWASGALWLDTRVGDPDRALWIEQSHFDGASPLRGAVAGMDGLHILGTLWAIGPGATQELAEALAEHLPYRADLRAGVTC
LAGYGTATAQSMLLLRVLGSDMEAVRHLMIDAWTVLRQPMHGVPARPLRLWST
>Mature_293_residues
MRHPDFPSQLAMTSAWHASLRLRFAARAGRTAMVERRHEGPLRVQKPLYPEGEICHGVVLHPPAGVAGGDRLDIDIAVAS
GAHAVLATPGATKWYKSLGRDAAQHVRIEVAAGGKLDWLPQENIVFDDARARITTDVVVAPGGSAIGWDAVVLGRQASGE
RWASGALWLDTRVGDPDRALWIEQSHFDGASPLRGAVAGMDGLHILGTLWAIGPGATQELAEALAEHLPYRADLRAGVTC
LAGYGTATAQSMLLLRVLGSDMEAVRHLMIDAWTVLRQPMHGVPARPLRLWST

Specific function: Required for maturation of urease via the functional incorporation of the urease nickel metallocenter

COG id: COG0829

COG function: function code O; Urease accessory protein UreH

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ureD family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): URED_RALME (Q1LPT3)

Other databases:

- EMBL:   CP000352
- RefSeq:   YP_583112.1
- STRING:   Q1LPT3
- GeneID:   4037754
- GenomeReviews:   CP000352_GR
- KEGG:   rme:Rmet_0957
- eggNOG:   COG0829
- HOGENOM:   HBG711156
- OMA:   CLGRPVM
- ProtClustDB:   CLSK897186
- BioCyc:   RMET266264:RMET_0957-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01384
- InterPro:   IPR002669

Pfam domain/function: PF01774 UreD

EC number: NA

Molecular weight: Translated: 31470; Mature: 31470

Theoretical pI: Translated: 7.44; Mature: 7.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRHPDFPSQLAMTSAWHASLRLRFAARAGRTAMVERRHEGPLRVQKPLYPEGEICHGVVL
CCCCCCCHHHHHHHHHHHHEEEEEHHHCCCHHHHHHCCCCCCEECCCCCCCCCCCCCEEE
HPPAGVAGGDRLDIDIAVASGAHAVLATPGATKWYKSLGRDAAQHVRIEVAAGGKLDWLP
CCCCCCCCCCEEEEEEEEECCCEEEEECCCCHHHHHHHCHHHHHEEEEEEECCCEEECCC
QENIVFDDARARITTDVVVAPGGSAIGWDAVVLGRQASGERWASGALWLDTRVGDPDRAL
CCCEEECCCCCEEEEEEEEECCCCCCCCEEEEECCCCCCCCCCCCEEEEECCCCCCCCEE
WIEQSHFDGASPLRGAVAGMDGLHILGTLWAIGPGATQELAEALAEHLPYRADLRAGVTC
EEECCCCCCCCCHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHCCEEE
LAGYGTATAQSMLLLRVLGSDMEAVRHLMIDAWTVLRQPMHGVPARPLRLWST
EECCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCC
>Mature Secondary Structure
MRHPDFPSQLAMTSAWHASLRLRFAARAGRTAMVERRHEGPLRVQKPLYPEGEICHGVVL
CCCCCCCHHHHHHHHHHHHEEEEEHHHCCCHHHHHHCCCCCCEECCCCCCCCCCCCCEEE
HPPAGVAGGDRLDIDIAVASGAHAVLATPGATKWYKSLGRDAAQHVRIEVAAGGKLDWLP
CCCCCCCCCCEEEEEEEEECCCEEEEECCCCHHHHHHHCHHHHHEEEEEEECCCEEECCC
QENIVFDDARARITTDVVVAPGGSAIGWDAVVLGRQASGERWASGALWLDTRVGDPDRAL
CCCEEECCCCCEEEEEEEEECCCCCCCCEEEEECCCCCCCCCCCCEEEEECCCCCCCCEE
WIEQSHFDGASPLRGAVAGMDGLHILGTLWAIGPGATQELAEALAEHLPYRADLRAGVTC
EEECCCCCCCCCHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHCCEEE
LAGYGTATAQSMLLLRVLGSDMEAVRHLMIDAWTVLRQPMHGVPARPLRLWST
EECCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA