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The map label for this gene is cyoD [H]

Identifier: 94309896

GI number: 94309896

Start: 1036952

End: 1037302

Strand: Direct

Name: cyoD [H]

Synonym: Rmet_0951

Alternate gene names: 94309896

Gene position: 1036952-1037302 (Clockwise)

Preceding gene: 94309895

Following gene: 335055511

Centisome position: 26.4

GC content: 57.55

Gene sequence:

>351_bases
ATGGCACAGCAACACGCTTCGACCGCCGCTCACGGCGCGTCGCATGGCCACAGCAGCGTCAAGTCGTATGTGATTGGCTT
CGTGCTGGCGGTGATCCTGACCGTGATTCCGTTCAAGATCGTCATGGACGGCACGATGGAACGCGGCACGATGCTGTGGA
TCATCCTGGGCATGGCGGCCGTGCAGATCGTCGTGCATCTGAAGTACTTCCTGCATCTGGATGGTTCGAACGGTCAGCGC
TGGAACGTGATGGCGCTGCTGTTCACGGTACTGATCCTGTTCATTGTGCTGGCCGGTTCGCTCTGGATCATGCACAACAT
GAACGCCAACATGATGCCGTGGATGAAGTAA

Upstream 100 bases:

>100_bases
CGTGGCCAAGCGCCTGAACTGCCTCAGCCTGTTCTGGCACTTCCTGGACGTGGTCTGGATCGGTGTGTTCACCGTGGTCT
ACCTGATGGGAGCAATGTAA

Downstream 100 bases:

>100_bases
CGGATCATACGGTCGTTTGAAAAACGGGGCCTTTGGGCCCCGTTTTTTATTGGCCACGGTGCGCAACGCACCGGCATCGG
CCACGGCTGCACCGGTTCAC

Product: cytochrome o ubiquinol oxidase subunit IV

Products: Ubiquinone-8; H2O [C]

Alternate protein names: Ubiquinol oxidase chain D [H]

Number of amino acids: Translated: 116; Mature: 115

Protein sequence:

>116_residues
MAQQHASTAAHGASHGHSSVKSYVIGFVLAVILTVIPFKIVMDGTMERGTMLWIILGMAAVQIVVHLKYFLHLDGSNGQR
WNVMALLFTVLILFIVLAGSLWIMHNMNANMMPWMK

Sequences:

>Translated_116_residues
MAQQHASTAAHGASHGHSSVKSYVIGFVLAVILTVIPFKIVMDGTMERGTMLWIILGMAAVQIVVHLKYFLHLDGSNGQR
WNVMALLFTVLILFIVLAGSLWIMHNMNANMMPWMK
>Mature_115_residues
AQQHASTAAHGASHGHSSVKSYVIGFVLAVILTVIPFKIVMDGTMERGTMLWIILGMAAVQIVVHLKYFLHLDGSNGQRW
NVMALLFTVLILFIVLAGSLWIMHNMNANMMPWMK

Specific function: Cytochrome o terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at high aeration [H]

COG id: COG3125

COG function: function code C; Heme/copper-type cytochrome/quinol oxidase, subunit 4

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome c oxidase bacterial subunit 4 family [H]

Homologues:

Organism=Escherichia coli, GI1786632, Length=106, Percent_Identity=52.8301886792453, Blast_Score=104, Evalue=1e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005171
- InterPro:   IPR014210 [H]

Pfam domain/function: PF03626 COX4_pro [H]

EC number: NA

Molecular weight: Translated: 12893; Mature: 12762

Theoretical pI: Translated: 10.24; Mature: 10.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
9.5 %Met     (Translated Protein)
9.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
8.7 %Met     (Mature Protein)
8.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQQHASTAAHGASHGHSSVKSYVIGFVLAVILTVIPFKIVMDGTMERGTMLWIILGMAA
CCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
VQIVVHLKYFLHLDGSNGQRWNVMALLFTVLILFIVLAGSLWIMHNMNANMMPWMK
HHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCC
>Mature Secondary Structure 
AQQHASTAAHGASHGHSSVKSYVIGFVLAVILTVIPFKIVMDGTMERGTMLWIILGMAA
CCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
VQIVVHLKYFLHLDGSNGQRWNVMALLFTVLILFIVLAGSLWIMHNMNANMMPWMK
HHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Ubiquinol-8; O(2) [C]

Specific reaction: Ubiquinol-8 + O(2) = Ubiquinone-8 + H2O [C]

General reaction: Oxidoreductases [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]