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The map label for this gene is psd [H]

Identifier: 94309860

GI number: 94309860

Start: 1000497

End: 1001081

Strand: Direct

Name: psd [H]

Synonym: Rmet_0915

Alternate gene names: 94309860

Gene position: 1000497-1001081 (Clockwise)

Preceding gene: 94309859

Following gene: 94309861

Centisome position: 25.47

GC content: 61.71

Gene sequence:

>585_bases
GTGCTGGTGCATATCAGCGCGGGCTTCTGGGGCGCTCTGCCGCTGTGGATCGTCACGCTGTTCGTGCTTCAGTTCTTTCG
CGATCCGCCTCGGCCGATTCCGTCTGCGCCAAACGCAATCCTGGCGCCTGCCGATGGCCGCATTGTCGTGGTTGAGAAAA
CGCAGGACCCGTACGCGGGCCGCGAGGCACTGAAGATCAGCGTGTTCATGAATGTGTTCAACGTGCACTCGAACCGCTCG
TCGCTCGATGGCAAGGTGGAGAAGCTCGAGTACTTTCCCGGCAAGTTCGTCAATGCCGATCTCGACAAGGCATCGATGGA
GAACGAGCGCAATGCCGTCGTGATCCGCCGTGCGTCGGATGGCCAGGTGGTGACGCTGGTGCAGGTGGCTGGTCTGGTGG
CGCGCCGTATCCTGTGCTACATCAATGTGGGCGACATGCTGTCGCGTGGTCAGCGCTACGGCTTTATCCGTTTCGGTTCG
CGGGTGGATGTGTACCTGCCCACGGATGCCCGTCCGCGCGTGACGATTGGCGAGAAAGTTTCGGCGTCGGCGACCGTGCT
GGCTGATCTGGATGTGCGGGCGTAA

Upstream 100 bases:

>100_bases
CTGCCCACGGAAATCACCGAACATCTTCTGCATGAATTATCCTCATCCGCTGATCGCCCGTGAAGGCTGGCCATTCCTGG
CCGGCGCATTCATTGTCTCG

Downstream 100 bases:

>100_bases
GCGCGCCTGCTACAGGGGACACTGAATGGGTGCCTTCAATCGACGCAACAAGCGCGTCAACAACGGTAACGTGACGCACC
TGCGTCCGTTTCGCCGTAAC

Product: phosphatidylserine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 194; Mature: 194

Protein sequence:

>194_residues
MLVHISAGFWGALPLWIVTLFVLQFFRDPPRPIPSAPNAILAPADGRIVVVEKTQDPYAGREALKISVFMNVFNVHSNRS
SLDGKVEKLEYFPGKFVNADLDKASMENERNAVVIRRASDGQVVTLVQVAGLVARRILCYINVGDMLSRGQRYGFIRFGS
RVDVYLPTDARPRVTIGEKVSASATVLADLDVRA

Sequences:

>Translated_194_residues
MLVHISAGFWGALPLWIVTLFVLQFFRDPPRPIPSAPNAILAPADGRIVVVEKTQDPYAGREALKISVFMNVFNVHSNRS
SLDGKVEKLEYFPGKFVNADLDKASMENERNAVVIRRASDGQVVTLVQVAGLVARRILCYINVGDMLSRGQRYGFIRFGS
RVDVYLPTDARPRVTIGEKVSASATVLADLDVRA
>Mature_194_residues
MLVHISAGFWGALPLWIVTLFVLQFFRDPPRPIPSAPNAILAPADGRIVVVEKTQDPYAGREALKISVFMNVFNVHSNRS
SLDGKVEKLEYFPGKFVNADLDKASMENERNAVVIRRASDGQVVTLVQVAGLVARRILCYINVGDMLSRGQRYGFIRFGS
RVDVYLPTDARPRVTIGEKVSASATVLADLDVRA

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 3 subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003817
- InterPro:   IPR004428 [H]

Pfam domain/function: PF02666 PS_Dcarbxylase [H]

EC number: =4.1.1.65 [H]

Molecular weight: Translated: 21430; Mature: 21430

Theoretical pI: Translated: 9.97; Mature: 9.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLVHISAGFWGALPLWIVTLFVLQFFRDPPRPIPSAPNAILAPADGRIVVVEKTQDPYAG
CEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCC
REALKISVFMNVFNVHSNRSSLDGKVEKLEYFPGKFVNADLDKASMENERNAVVIRRASD
CHHEEEEEEEEEHHCCCCCCCCCCHHEEHCCCCCCEECCCCCHHHCCCCCCEEEEEECCC
GQVVTLVQVAGLVARRILCYINVGDMLSRGQRYGFIRFGSRVDVYLPTDARPRVTIGEKV
CCEEHHHHHHHHHHHHHEEEEECHHHHHCCCCEEEEEECCEEEEEECCCCCCCEEECCCC
SASATVLADLDVRA
CCCEEEEEEEECCC
>Mature Secondary Structure
MLVHISAGFWGALPLWIVTLFVLQFFRDPPRPIPSAPNAILAPADGRIVVVEKTQDPYAG
CEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCC
REALKISVFMNVFNVHSNRSSLDGKVEKLEYFPGKFVNADLDKASMENERNAVVIRRASD
CHHEEEEEEEEEHHCCCCCCCCCCHHEEHCCCCCCEECCCCCHHHCCCCCCEEEEEECCC
GQVVTLVQVAGLVARRILCYINVGDMLSRGQRYGFIRFGSRVDVYLPTDARPRVTIGEKV
CCEEHHHHHHHHHHHHHEEEEECHHHHHCCCCEEEEEECCEEEEEECCCCCCCEEECCCC
SASATVLADLDVRA
CCCEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA