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The map label for this gene is rpoR

Identifier: 94309855

GI number: 94309855

Start: 995862

End: 996428

Strand: Reverse

Name: rpoR

Synonym: Rmet_0910

Alternate gene names: NA

Gene position: 996428-995862 (Counterclockwise)

Preceding gene: 94309864

Following gene: 94309854

Centisome position: 25.37

GC content: 61.55

Gene sequence:

>567_bases
ATGGCCACCGATCAGGAACTCTCCGACTTTCTCGCCAGCGTGGAACGACGCGCCTTCAAGCAGGCCGTGTTCGCCGTGCG
GGACGACGAAGCCGCGCTGGACATCGTGCAGGACGCCATGATCAAGCTGGCGGAGAAATACGGCGACAAATCTGCCGCAG
AACTCCCGCCTCTGTTCCAGCGCATCCTCCAGAACACAATCCACGACTGGTTCCGTCGCCAGAAGGTGCGCAACACTTGG
GTGACGCTTTTTTCGAACCTGCGCGACGAGCGCGAGGGCGACGATAGCGACCTGCTCGACACATTGGAGGCCCAAGCCGG
CACCGAGATGGCAGAAAGCAGCGCCGACAAGGTCGAACGCGCGCAGGTCATGCATATCATCGAGCAGGAAATCCAGCGTC
TGCCCACGCGTCAACGCGAGGCTTTCCTGATGCGTTACTGGGAGGATATGGACGTAGCCGAAACAGCAGCCGTGATGGGC
TGTTCCGAGGGCAGCGTCAAGACGCACTGTTCCCGTGCAACGCATACTCTGGCGCAAGCCTTGCGCGCGCGGGGGGTCCG
ACTATGA

Upstream 100 bases:

>100_bases
CATGTGTTTTTTGCTAGCATCGCAGACATTTTAGAAGTGTCGCAGGACTTAGGCGGCACATTCGGCCCGGCCCCCGCGCC
CAACTGCTGTATTTGCCTGC

Downstream 100 bases:

>100_bases
GCAGAAACGAACGAGATATCCAGGAACGGCGCTTCGCCCACGAGATTCGCCTGGCACTTGATGCCTCGGCGGATGCACTG
TCGCCGGACGTTGCCGAACG

Product: RNA polymerase factor sigma-70

Products: NA

Alternate protein names: RNA Polymerase Sigma-24 Subunit ECF Subfamily; ECF Subfamily RNA Polymerase Sigma-24 Factor; ECF Subfamily RNA Polymerase Sigma-24 Subunit; Sigma-; RNA Polymerase Sigma Factor; RNA Polymerase Sigma Factor Transcription Regulator Protein; RNA Polymerase Sigma-E Factor; RNA Polymerase Sigma-70 Factor; Specialized Sigma Subunits Of RNA Polymerase; ECF Subfamily RNA Polymerase Sigma Factor

Number of amino acids: Translated: 188; Mature: 187

Protein sequence:

>188_residues
MATDQELSDFLASVERRAFKQAVFAVRDDEAALDIVQDAMIKLAEKYGDKSAAELPPLFQRILQNTIHDWFRRQKVRNTW
VTLFSNLRDEREGDDSDLLDTLEAQAGTEMAESSADKVERAQVMHIIEQEIQRLPTRQREAFLMRYWEDMDVAETAAVMG
CSEGSVKTHCSRATHTLAQALRARGVRL

Sequences:

>Translated_188_residues
MATDQELSDFLASVERRAFKQAVFAVRDDEAALDIVQDAMIKLAEKYGDKSAAELPPLFQRILQNTIHDWFRRQKVRNTW
VTLFSNLRDEREGDDSDLLDTLEAQAGTEMAESSADKVERAQVMHIIEQEIQRLPTRQREAFLMRYWEDMDVAETAAVMG
CSEGSVKTHCSRATHTLAQALRARGVRL
>Mature_187_residues
ATDQELSDFLASVERRAFKQAVFAVRDDEAALDIVQDAMIKLAEKYGDKSAAELPPLFQRILQNTIHDWFRRQKVRNTWV
TLFSNLRDEREGDDSDLLDTLEAQAGTEMAESSADKVERAQVMHIIEQEIQRLPTRQREAFLMRYWEDMDVAETAAVMGC
SEGSVKTHCSRATHTLAQALRARGVRL

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21459; Mature: 21328

Theoretical pI: Translated: 4.87; Mature: 4.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATDQELSDFLASVERRAFKQAVFAVRDDEAALDIVQDAMIKLAEKYGDKSAAELPPLFQ
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHCCCHHHH
RILQNTIHDWFRRQKVRNTWVTLFSNLRDEREGDDSDLLDTLEAQAGTEMAESSADKVER
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
AQVMHIIEQEIQRLPTRQREAFLMRYWEDMDVAETAAVMGCSEGSVKTHCSRATHTLAQA
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
LRARGVRL
HHHCCCCC
>Mature Secondary Structure 
ATDQELSDFLASVERRAFKQAVFAVRDDEAALDIVQDAMIKLAEKYGDKSAAELPPLFQ
CCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHCCCHHHH
RILQNTIHDWFRRQKVRNTWVTLFSNLRDEREGDDSDLLDTLEAQAGTEMAESSADKVER
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
AQVMHIIEQEIQRLPTRQREAFLMRYWEDMDVAETAAVMGCSEGSVKTHCSRATHTLAQA
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
LRARGVRL
HHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA