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The map label for this gene is ydfH [C]

Identifier: 94309829

GI number: 94309829

Start: 968442

End: 969185

Strand: Reverse

Name: ydfH [C]

Synonym: Rmet_0884

Alternate gene names: 94309829

Gene position: 969185-968442 (Counterclockwise)

Preceding gene: 94309832

Following gene: 94309828

Centisome position: 24.67

GC content: 65.86

Gene sequence:

>744_bases
ATGTCCAAGAATCTCAAGCTTATTGCCGCGGCCGACGCCCTGCCGGCGCTCACCGACAACAAACCGGCCCGCAAGGGCTC
CGTCGAGGAGCGCATGTATCACGAGATCTATGACGCGATCATGGAGCACCGGCTGCCTCCCCGGACCAAGCTGACCGAGC
ATTCGCTTTGCGAGATCTATGCCACGGCCCGTCATACGGTACGCAAGGTGCTGTCGCGCCTGGCCGCCGACGGCATGGTC
GATCTGGAGCCGAATCGCGGCGCGTTCATCGCCAGCCCGTCCACGGACGAGGCGCACGACATGTTCGAACTGCGCCAGAT
GCTGGAGCGCGCCGTGCTCGATAAGCTCGCCTCCCTGCCCAACGTGCGCACCGTGATCGCCCCGCTGCGCAAGATGGTCA
ATGACGAGCGCCAGGCCTTCCTGACGCACGAGCGCCCACGCTGGATCCGCCTCTCGGCCGAGTTCCACACCGCGCTGGCC
GAACTGTCCGGCAACCAGTTGCTCGTGACGATGATGCGCCGACTGGTGTCGCGCACCACGCTGATGATTGCCAGCGTGGA
GTCGCCGGGCCACAACGCCTGCTCGTTCGACGAGCACGACGAAATCCTCGATGCACTGGAACAGGGCGACGCCGCCCTGG
CCCAGACGCGCATGGCGCACCACCTTGGCGCCTGCGCGGAACGCGTTCAGCCGGATGAGCCCGGCAACTTCGATCTTCGC
AGTGTGCTGGGCCGCTCCACCTAG

Upstream 100 bases:

>100_bases
CTGCACGGCCGCATGATCGGTATCAAGGCGCGTGATGTCGGTTTGATAACCACTCGCTACGATCGCCGACCATCGCCACC
TTGCATTACGAGTGACCAGG

Downstream 100 bases:

>100_bases
CGCAATGTTCCCGCCGCCGGGCAACAGCCACCCCCTGTTGCCGATCTAGAACCAGCGGTCTCATCTGCCGAAAGACGCCC
AACTAGAGGCCAGGCACGAG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator GntR Family; Transcriptional Regulator; GntR-Family Transcriptional Regulator; Transcriptional Regulator Protein; GntR Domain-Containing Protein; Transcriptional Regulator Protein GntR Family; GntR Family Regulatory Protein; Transcriptional Regulator Gntr Family; Transcriptional Regulator GntR Family Protein; GntR Family Transcription Regulator Protein; GntR Family Regulatory; Transcriptional Regulatory Protein GntR Family; Bacterial Regulatory Protein; GntR Family Transcription Regulator; GntR-Family Protein Transcriptional Regulator; Transcriptional Regulator MdcY Family Protein; Transcription Regulator Protein; FCD Domain Protein; Regulatory Protein GntR HTHGntR; GntR-Type Regulator; TRANSCRIPTIONal REGULATOR GntR Family

Number of amino acids: Translated: 247; Mature: 246

Protein sequence:

>247_residues
MSKNLKLIAAADALPALTDNKPARKGSVEERMYHEIYDAIMEHRLPPRTKLTEHSLCEIYATARHTVRKVLSRLAADGMV
DLEPNRGAFIASPSTDEAHDMFELRQMLERAVLDKLASLPNVRTVIAPLRKMVNDERQAFLTHERPRWIRLSAEFHTALA
ELSGNQLLVTMMRRLVSRTTLMIASVESPGHNACSFDEHDEILDALEQGDAALAQTRMAHHLGACAERVQPDEPGNFDLR
SVLGRST

Sequences:

>Translated_247_residues
MSKNLKLIAAADALPALTDNKPARKGSVEERMYHEIYDAIMEHRLPPRTKLTEHSLCEIYATARHTVRKVLSRLAADGMV
DLEPNRGAFIASPSTDEAHDMFELRQMLERAVLDKLASLPNVRTVIAPLRKMVNDERQAFLTHERPRWIRLSAEFHTALA
ELSGNQLLVTMMRRLVSRTTLMIASVESPGHNACSFDEHDEILDALEQGDAALAQTRMAHHLGACAERVQPDEPGNFDLR
SVLGRST
>Mature_246_residues
SKNLKLIAAADALPALTDNKPARKGSVEERMYHEIYDAIMEHRLPPRTKLTEHSLCEIYATARHTVRKVLSRLAADGMVD
LEPNRGAFIASPSTDEAHDMFELRQMLERAVLDKLASLPNVRTVIAPLRKMVNDERQAFLTHERPRWIRLSAEFHTALAE
LSGNQLLVTMMRRLVSRTTLMIASVESPGHNACSFDEHDEILDALEQGDAALAQTRMAHHLGACAERVQPDEPGNFDLRS
VLGRST

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27681; Mature: 27550

Theoretical pI: Translated: 6.74; Mature: 6.74

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKNLKLIAAADALPALTDNKPARKGSVEERMYHEIYDAIMEHRLPPRTKLTEHSLCEIY
CCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
ATARHTVRKVLSRLAADGMVDLEPNRGAFIASPSTDEAHDMFELRQMLERAVLDKLASLP
HHHHHHHHHHHHHHHHCCCEEECCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCC
NVRTVIAPLRKMVNDERQAFLTHERPRWIRLSAEFHTALAELSGNQLLVTMMRRLVSRTT
CHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
LMIASVESPGHNACSFDEHDEILDALEQGDAALAQTRMAHHLGACAERVQPDEPGNFDLR
HHEEECCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHH
SVLGRST
HHHCCCC
>Mature Secondary Structure 
SKNLKLIAAADALPALTDNKPARKGSVEERMYHEIYDAIMEHRLPPRTKLTEHSLCEIY
CCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
ATARHTVRKVLSRLAADGMVDLEPNRGAFIASPSTDEAHDMFELRQMLERAVLDKLASLP
HHHHHHHHHHHHHHHHCCCEEECCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCC
NVRTVIAPLRKMVNDERQAFLTHERPRWIRLSAEFHTALAELSGNQLLVTMMRRLVSRTT
CHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
LMIASVESPGHNACSFDEHDEILDALEQGDAALAQTRMAHHLGACAERVQPDEPGNFDLR
HHEEECCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHH
SVLGRST
HHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA