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The map label for this gene is omp32 [H]

Identifier: 94309825

GI number: 94309825

Start: 963898

End: 964983

Strand: Reverse

Name: omp32 [H]

Synonym: Rmet_0880

Alternate gene names: 94309825

Gene position: 964983-963898 (Counterclockwise)

Preceding gene: 94309826

Following gene: 94309824

Centisome position: 24.57

GC content: 61.69

Gene sequence:

>1086_bases
ATGAAGAAGCAGTACAAGCCGGCTCTCAAGCTGGCGGCGATCGCAGCCACCCTTTTCTCCGGCGCGGCCATGGCCCAGTC
CAGCGTGACGCTGTACGGCATGGCCGATGCTTTCATCGGAGGCGTCAAGAATCCGGGCTCGGGCGACCGCGCCTACGTAG
TCAACTCGGGTGGCATGCAAACCTCGTACTGGGGCATCAAGGGTACCGAGGACCTGGGCATGGGCACGAAGGCCATCTTC
GACCTGAACGGCTTCTTCCGCCCCGACACCGGTAGCATGGGCCGCTTCACCGGCGACTCGATGTTCAGCCGCAATGCCTT
CGTCGGCCTGACGAACGAAACCTACGGCACGCTGAAGATCGGCCGCAACACGACGCCGTACTTCGTGTCGACGATCCTGT
TCAACCCGCTGGTCGACTCGTACACGTTCAGCCCGATGATCTTCCACACGTACTTCCCGACGCCTCAAAACGTTGGCGGC
GTGTCCGATCCGGGCATCCTGGGCGATTCGGGCTGGAACAACTCGCTGCTGTACTCGACGCCGAACTTCGGTGGCCTGAC
CGCGAACTTCATCTACGGCTTTGGCGAATCGCCCGGTAACAACGGCAAGAACAAGTGGGGCGGCAACCTGACCTACTTCT
CCGGCAACTTCGCGGCGACGCTGGCATTCCAGCAGGTCAAGTTCGACGTTGCTCCGTTTGACCCGCAGAATGCCAATCTC
GCGGGCCTCGACAAGCAGTCCGCCGTCCAGGCTGGCGTGACGTACGACTTCAAGATCGTCAAGGCCTTCCTGCAAGGCCA
GTACATCAAGACCAACTTCAACACGAGCACCAATGGCGGCGACATCAAGCACATCGACGGCCAGGCCGGCGTCGCGGTGC
CGGTTGGCGCAGGCAATATCCTGGCGTCGTACACCTACGGCCGCGTGCTGAACGAAGTTGCTGGCATCAAGCGCAATACG
TTCGCCGTCGCCTACGACTACAACCTGTCGAAGCGCACCGACGTCTACGGTGCCTACTACTACGACAAGGTGTCGGGCGT
CGAGCACGGCGACACCTTCGGCGTCGGCGTTCGCCACCGCTTCTGA

Upstream 100 bases:

>100_bases
TTCCAGCGCGCCGCCCAGGCACGGAACTAGAGAGAACCCAGCAGGTTCCAGCACACAGGCAAGCGTTCTGAGCAGCATTA
CAACCACGGAGGTCTTAAAC

Downstream 100 bases:

>100_bases
TCCCGGAAAATTCCGCCGGATCGTTGGTTGTAAAGCCCGCCTCCGGCGGGCTTTTTTGTTGCGTGCCCCCATGACACAGG
CGTCACAATGCTGCGCCGCA

Product: putative outer membrane protein (porin)

Products: NA

Alternate protein names: OMP32 [H]

Number of amino acids: Translated: 361; Mature: 361

Protein sequence:

>361_residues
MKKQYKPALKLAAIAATLFSGAAMAQSSVTLYGMADAFIGGVKNPGSGDRAYVVNSGGMQTSYWGIKGTEDLGMGTKAIF
DLNGFFRPDTGSMGRFTGDSMFSRNAFVGLTNETYGTLKIGRNTTPYFVSTILFNPLVDSYTFSPMIFHTYFPTPQNVGG
VSDPGILGDSGWNNSLLYSTPNFGGLTANFIYGFGESPGNNGKNKWGGNLTYFSGNFAATLAFQQVKFDVAPFDPQNANL
AGLDKQSAVQAGVTYDFKIVKAFLQGQYIKTNFNTSTNGGDIKHIDGQAGVAVPVGAGNILASYTYGRVLNEVAGIKRNT
FAVAYDYNLSKRTDVYGAYYYDKVSGVEHGDTFGVGVRHRF

Sequences:

>Translated_361_residues
MKKQYKPALKLAAIAATLFSGAAMAQSSVTLYGMADAFIGGVKNPGSGDRAYVVNSGGMQTSYWGIKGTEDLGMGTKAIF
DLNGFFRPDTGSMGRFTGDSMFSRNAFVGLTNETYGTLKIGRNTTPYFVSTILFNPLVDSYTFSPMIFHTYFPTPQNVGG
VSDPGILGDSGWNNSLLYSTPNFGGLTANFIYGFGESPGNNGKNKWGGNLTYFSGNFAATLAFQQVKFDVAPFDPQNANL
AGLDKQSAVQAGVTYDFKIVKAFLQGQYIKTNFNTSTNGGDIKHIDGQAGVAVPVGAGNILASYTYGRVLNEVAGIKRNT
FAVAYDYNLSKRTDVYGAYYYDKVSGVEHGDTFGVGVRHRF
>Mature_361_residues
MKKQYKPALKLAAIAATLFSGAAMAQSSVTLYGMADAFIGGVKNPGSGDRAYVVNSGGMQTSYWGIKGTEDLGMGTKAIF
DLNGFFRPDTGSMGRFTGDSMFSRNAFVGLTNETYGTLKIGRNTTPYFVSTILFNPLVDSYTFSPMIFHTYFPTPQNVGG
VSDPGILGDSGWNNSLLYSTPNFGGLTANFIYGFGESPGNNGKNKWGGNLTYFSGNFAATLAFQQVKFDVAPFDPQNANL
AGLDKQSAVQAGVTYDFKIVKAFLQGQYIKTNFNTSTNGGDIKHIDGQAGVAVPVGAGNILASYTYGRVLNEVAGIKRNT
FAVAYDYNLSKRTDVYGAYYYDKVSGVEHGDTFGVGVRHRF

Specific function: Forms anion selective channels [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To bacterial outer membrane proteins and porins [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001702
- InterPro:   IPR002299 [H]

Pfam domain/function: PF00267 Porin_1 [H]

EC number: NA

Molecular weight: Translated: 38767; Mature: 38767

Theoretical pI: Translated: 9.39; Mature: 9.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKQYKPALKLAAIAATLFSGAAMAQSSVTLYGMADAFIGGVKNPGSGDRAYVVNSGGMQ
CCCCCCHHHHHHHHHHHHHCCHHHHCCCEEEEEEHHHHHCCCCCCCCCCEEEEEECCCCE
TSYWGIKGTEDLGMGTKAIFDLNGFFRPDTGSMGRFTGDSMFSRNAFVGLTNETYGTLKI
EEECCCCCCCCCCCCCEEEEECCCEECCCCCCCCCCCCCCHHCCCEEEEECCCCEEEEEE
GRNTTPYFVSTILFNPLVDSYTFSPMIFHTYFPTPQNVGGVSDPGILGDSGWNNSLLYST
CCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCEECCCCCCCCEEEEC
PNFGGLTANFIYGFGESPGNNGKNKWGGNLTYFSGNFAATLAFQQVKFDVAPFDPQNANL
CCCCCEEEEEEEEECCCCCCCCCCCCCCEEEEEECCEEEEEEEEEEEEEECCCCCCCCCE
AGLDKQSAVQAGVTYDFKIVKAFLQGQYIKTNFNTSTNGGDIKHIDGQAGVAVPVGAGNI
ECCCHHHHHHCCCEEHHHHHHHHHCCCEEEECCCCCCCCCCEEEECCCCCEEEEECCCCE
LASYTYGRVLNEVAGIKRNTFAVAYDYNLSKRTDVYGAYYYDKVSGVEHGDTFGVGVRHR
EEHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCEEEEEEECCCCCCCCCCEEECEEEEC
F
C
>Mature Secondary Structure
MKKQYKPALKLAAIAATLFSGAAMAQSSVTLYGMADAFIGGVKNPGSGDRAYVVNSGGMQ
CCCCCCHHHHHHHHHHHHHCCHHHHCCCEEEEEEHHHHHCCCCCCCCCCEEEEEECCCCE
TSYWGIKGTEDLGMGTKAIFDLNGFFRPDTGSMGRFTGDSMFSRNAFVGLTNETYGTLKI
EEECCCCCCCCCCCCCEEEEECCCEECCCCCCCCCCCCCCHHCCCEEEEECCCCEEEEEE
GRNTTPYFVSTILFNPLVDSYTFSPMIFHTYFPTPQNVGGVSDPGILGDSGWNNSLLYST
CCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCEECCCCCCCCEEEEC
PNFGGLTANFIYGFGESPGNNGKNKWGGNLTYFSGNFAATLAFQQVKFDVAPFDPQNANL
CCCCCEEEEEEEEECCCCCCCCCCCCCCEEEEEECCEEEEEEEEEEEEEECCCCCCCCCE
AGLDKQSAVQAGVTYDFKIVKAFLQGQYIKTNFNTSTNGGDIKHIDGQAGVAVPVGAGNI
ECCCHHHHHHCCCEEHHHHHHHHHCCCEEEECCCCCCCCCCEEEECCCCCEEEEECCCCE
LASYTYGRVLNEVAGIKRNTFAVAYDYNLSKRTDVYGAYYYDKVSGVEHGDTFGVGVRHR
EEHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCEEEEEEECCCCCCCCCCEEECEEEEC
F
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1848840 [H]