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The map label for this gene is ybbK [C]

Identifier: 94309749

GI number: 94309749

Start: 879972

End: 880727

Strand: Reverse

Name: ybbK [C]

Synonym: Rmet_0804

Alternate gene names: 94309749

Gene position: 880727-879972 (Counterclockwise)

Preceding gene: 94309750

Following gene: 94309748

Centisome position: 22.42

GC content: 62.04

Gene sequence:

>756_bases
ATGGCTTTCGGATTCAGCTTCGGCGGCTTGATCTTCCTGCTGGTTCTGCTGGTGATCTCCGCATTTCGCGTGCTGCGCGA
GTACGAGCGCGGTGTGGTCTTCATGCTTGGGCGCTTCTGGCGCGTCAAGGGACCTGGACTGGTGCTGATCATCCCCGCCA
TCCAGCAGATGGTGCGCGTGGACCTGCGCACCGTGGTACTGGACGTGCCCCCTCAGGACGTGATCTCGCACGACAACGTA
TCCGTCAAGGTCAACGCGGTGATCTACTTCCGGGTGGTCGACCCGGAACGCGCGATCATCCAGGTGGCCAACTTCCTGGA
GGCCACGAGCCAGCTCGCGCAGACCACGCTCCGCTCGGTGCTGGGCAAGCACGAGCTCGATGAAATGCTGGCGGAAAGGG
AGAAGCTGAACCTCGACATCCAGAAGGTGCTCGACGCCCAGACGGACGCATGGGGCATCAAGGTATCGAACGTCGAGATC
AAGCATGTCGACCTCAACGAGACGATGGTCCGCGCGATCGCACGGCAGGCCGAGGCCGAACGCGAGCGGCGCGCCAAGAT
CATTCATGCCGAAGGCGAATTGCAGGCATCGGAAAAGCTGCTAGAAGCCGCGCAGATGCTGGCGCGTCAACCGGAGGCGA
TGCAACTCCGCTACCTGCAAACGCTCACCCAGATCGCTGGCGACAAGAGTTCGACCATCGTCTTCCCGTTGCCAATGGGC
GTGCTGTCGGCACTTGCCGGCGGAGGGTCGAAATAG

Upstream 100 bases:

>100_bases
CGTGCGCGTGACGGCGCGGCGTGGGCTGGTGCTCGACGTGACAACCGCGGGCGACCCGTCATGAGCATTCCCACTGAAAC
AAGAACGGAAGGAGTCTGAT

Downstream 100 bases:

>100_bases
CACATTTTGATGCGATTGATTGGCCTCAAGAGTTTGCGCTGGACGCCACAATCGTTCACAACTTCCCTATTGGCATGAGC
CGGATCGAGGCCTAGCATCG

Product: putative membrane protease subunit, stomatin/prohibitin-like transmembrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 251; Mature: 250

Protein sequence:

>251_residues
MAFGFSFGGLIFLLVLLVISAFRVLREYERGVVFMLGRFWRVKGPGLVLIIPAIQQMVRVDLRTVVLDVPPQDVISHDNV
SVKVNAVIYFRVVDPERAIIQVANFLEATSQLAQTTLRSVLGKHELDEMLAEREKLNLDIQKVLDAQTDAWGIKVSNVEI
KHVDLNETMVRAIARQAEAERERRAKIIHAEGELQASEKLLEAAQMLARQPEAMQLRYLQTLTQIAGDKSSTIVFPLPMG
VLSALAGGGSK

Sequences:

>Translated_251_residues
MAFGFSFGGLIFLLVLLVISAFRVLREYERGVVFMLGRFWRVKGPGLVLIIPAIQQMVRVDLRTVVLDVPPQDVISHDNV
SVKVNAVIYFRVVDPERAIIQVANFLEATSQLAQTTLRSVLGKHELDEMLAEREKLNLDIQKVLDAQTDAWGIKVSNVEI
KHVDLNETMVRAIARQAEAERERRAKIIHAEGELQASEKLLEAAQMLARQPEAMQLRYLQTLTQIAGDKSSTIVFPLPMG
VLSALAGGGSK
>Mature_250_residues
AFGFSFGGLIFLLVLLVISAFRVLREYERGVVFMLGRFWRVKGPGLVLIIPAIQQMVRVDLRTVVLDVPPQDVISHDNVS
VKVNAVIYFRVVDPERAIIQVANFLEATSQLAQTTLRSVLGKHELDEMLAEREKLNLDIQKVLDAQTDAWGIKVSNVEIK
HVDLNETMVRAIARQAEAERERRAKIIHAEGELQASEKLLEAAQMLARQPEAMQLRYLQTLTQIAGDKSSTIVFPLPMGV
LSALAGGGSK

Specific function: Unknown

COG id: COG0330

COG function: function code O; Membrane protease subunits, stomatin/prohibitin homologs

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the band 7/mec-2 family [H]

Homologues:

Organism=Homo sapiens, GI221316744, Length=247, Percent_Identity=46.1538461538462, Blast_Score=213, Evalue=2e-55,
Organism=Homo sapiens, GI21686995, Length=247, Percent_Identity=46.1538461538462, Blast_Score=213, Evalue=2e-55,
Organism=Homo sapiens, GI38016911, Length=250, Percent_Identity=46, Blast_Score=211, Evalue=4e-55,
Organism=Homo sapiens, GI7657615, Length=247, Percent_Identity=35.6275303643725, Blast_Score=151, Evalue=5e-37,
Organism=Homo sapiens, GI7305503, Length=206, Percent_Identity=35.4368932038835, Blast_Score=127, Evalue=1e-29,
Organism=Homo sapiens, GI20149563, Length=158, Percent_Identity=37.3417721518987, Blast_Score=101, Evalue=6e-22,
Organism=Homo sapiens, GI38016907, Length=63, Percent_Identity=55.5555555555556, Blast_Score=74, Evalue=2e-13,
Organism=Escherichia coli, GI1786697, Length=188, Percent_Identity=36.7021276595745, Blast_Score=133, Evalue=1e-32,
Organism=Caenorhabditis elegans, GI17569493, Length=243, Percent_Identity=48.1481481481481, Blast_Score=219, Evalue=7e-58,
Organism=Caenorhabditis elegans, GI193209764, Length=244, Percent_Identity=48.7704918032787, Blast_Score=217, Evalue=5e-57,
Organism=Caenorhabditis elegans, GI71987612, Length=243, Percent_Identity=46.0905349794239, Blast_Score=200, Evalue=4e-52,
Organism=Caenorhabditis elegans, GI25153583, Length=243, Percent_Identity=46.0905349794239, Blast_Score=200, Evalue=5e-52,
Organism=Caenorhabditis elegans, GI17569497, Length=244, Percent_Identity=43.0327868852459, Blast_Score=200, Evalue=5e-52,
Organism=Caenorhabditis elegans, GI71987621, Length=243, Percent_Identity=46.0905349794239, Blast_Score=199, Evalue=8e-52,
Organism=Caenorhabditis elegans, GI17569499, Length=240, Percent_Identity=46.25, Blast_Score=198, Evalue=2e-51,
Organism=Caenorhabditis elegans, GI17570459, Length=241, Percent_Identity=44.3983402489627, Blast_Score=194, Evalue=5e-50,
Organism=Caenorhabditis elegans, GI193210507, Length=250, Percent_Identity=43.6, Blast_Score=191, Evalue=2e-49,
Organism=Caenorhabditis elegans, GI17570161, Length=250, Percent_Identity=43.6, Blast_Score=191, Evalue=2e-49,
Organism=Caenorhabditis elegans, GI71989948, Length=223, Percent_Identity=48.4304932735426, Blast_Score=184, Evalue=3e-47,
Organism=Caenorhabditis elegans, GI32566490, Length=238, Percent_Identity=45.7983193277311, Blast_Score=181, Evalue=3e-46,
Organism=Caenorhabditis elegans, GI71989955, Length=180, Percent_Identity=48.8888888888889, Blast_Score=146, Evalue=1e-35,
Organism=Caenorhabditis elegans, GI71989963, Length=116, Percent_Identity=49.1379310344828, Blast_Score=114, Evalue=5e-26,
Organism=Caenorhabditis elegans, GI32564147, Length=168, Percent_Identity=36.9047619047619, Blast_Score=110, Evalue=6e-25,
Organism=Caenorhabditis elegans, GI17542664, Length=165, Percent_Identity=25.4545454545455, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI45556022, Length=238, Percent_Identity=48.7394957983193, Blast_Score=220, Evalue=8e-58,
Organism=Drosophila melanogaster, GI62484448, Length=244, Percent_Identity=50, Blast_Score=204, Evalue=4e-53,
Organism=Drosophila melanogaster, GI281365664, Length=244, Percent_Identity=50, Blast_Score=204, Evalue=6e-53,
Organism=Drosophila melanogaster, GI24657857, Length=244, Percent_Identity=50, Blast_Score=204, Evalue=6e-53,
Organism=Drosophila melanogaster, GI18860517, Length=240, Percent_Identity=46.25, Blast_Score=204, Evalue=7e-53,
Organism=Drosophila melanogaster, GI62484274, Length=244, Percent_Identity=50, Blast_Score=203, Evalue=8e-53,
Organism=Drosophila melanogaster, GI21356845, Length=245, Percent_Identity=37.9591836734694, Blast_Score=187, Evalue=5e-48,
Organism=Drosophila melanogaster, GI281361631, Length=243, Percent_Identity=37.8600823045267, Blast_Score=183, Evalue=1e-46,
Organism=Drosophila melanogaster, GI281361633, Length=243, Percent_Identity=37.8600823045267, Blast_Score=182, Evalue=1e-46,
Organism=Drosophila melanogaster, GI28573263, Length=246, Percent_Identity=38.6178861788618, Blast_Score=181, Evalue=5e-46,
Organism=Drosophila melanogaster, GI281361635, Length=181, Percent_Identity=39.7790055248619, Blast_Score=145, Evalue=4e-35,
Organism=Drosophila melanogaster, GI45550506, Length=188, Percent_Identity=37.2340425531915, Blast_Score=124, Evalue=4e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001107
- InterPro:   IPR018080
- InterPro:   IPR001972 [H]

Pfam domain/function: PF01145 Band_7 [H]

EC number: NA

Molecular weight: Translated: 27940; Mature: 27809

Theoretical pI: Translated: 7.84; Mature: 7.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFGFSFGGLIFLLVLLVISAFRVLREYERGVVFMLGRFWRVKGPGLVLIIPAIQQMVRV
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHEEHHHHHEECCCCEEEEHHHHHHHHHH
DLRTVVLDVPPQDVISHDNVSVKVNAVIYFRVVDPERAIIQVANFLEATSQLAQTTLRSV
HHHHHEEECCCHHHHCCCCCEEEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHH
LGKHELDEMLAEREKLNLDIQKVLDAQTDAWGIKVSNVEIKHVDLNETMVRAIARQAEAE
HCHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCEEEECEEEEEECCHHHHHHHHHHHHHHH
RERRAKIIHAEGELQASEKLLEAAQMLARQPEAMQLRYLQTLTQIAGDKSSTIVFPLPMG
HHHHHEEEECCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEEECCHH
VLSALAGGGSK
HHHHHCCCCCC
>Mature Secondary Structure 
AFGFSFGGLIFLLVLLVISAFRVLREYERGVVFMLGRFWRVKGPGLVLIIPAIQQMVRV
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHEEHHHHHEECCCCEEEEHHHHHHHHHH
DLRTVVLDVPPQDVISHDNVSVKVNAVIYFRVVDPERAIIQVANFLEATSQLAQTTLRSV
HHHHHEEECCCHHHHCCCCCEEEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHH
LGKHELDEMLAEREKLNLDIQKVLDAQTDAWGIKVSNVEIKHVDLNETMVRAIARQAEAE
HCHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCEEEECEEEEEECCHHHHHHHHHHHHHHH
RERRAKIIHAEGELQASEKLLEAAQMLARQPEAMQLRYLQTLTQIAGDKSSTIVFPLPMG
HHHHHEEEECCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEEECCHH
VLSALAGGGSK
HHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]