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The map label for this gene is opuCB [H]

Identifier: 94309746

GI number: 94309746

Start: 877306

End: 877956

Strand: Direct

Name: opuCB [H]

Synonym: Rmet_0801

Alternate gene names: 94309746

Gene position: 877306-877956 (Clockwise)

Preceding gene: 94309745

Following gene: 94309747

Centisome position: 22.33

GC content: 66.21

Gene sequence:

>651_bases
ATGGATCTGCTGACCTACCTTCACCATAGCTGGCCGACGCTGCTACGGCTGACTGGCGAGCACCTCGCGCTGGTCGGCTC
CGCAGTCGGGTTGGCCATCGTCATCGGTGTGCCACTCGGCATCCTGATCACGCGACACCGCTTTCTGGCCGGGCCGATGC
TGGCGTTGGCGACCGTGGTGCTGACGCTGCCGTCGATCGCGCTGTTCGGCCTGATGATCCCGATCTTCGCGCGCTTCGGC
CACGCGTTGGGCTACCTGCCGGCCGTGACCGCCGTGTTCCTGTACTCGCTGCTGCCGATCATGCGCAACACGTACACCGC
GCTGGCCAATATCGATCCCGGCATCCAGGAAGCCGGCCGCGGCATCGGCATGACCACATGGCAGCGTATGCGGCTGGTGG
ATCTTCCGCTCGCCGTGCCCGTGATCCTGGGCGGCGTGCGTACCGCCGTCGTGATGAACATCGGTGTGGCCACGATCGCG
GCGGTTATCGGCGCCGGTGGCCTGGGCGTGCTGATCCTGCAAGCGATCAGCCAGAGCAACATGAGCAAGCTGGCCGTGGG
CGCGGTTCTCGTCAGCCTGCTCGCCATTGTGGCGGACGCGTGCCTGCAGGCACTGCAGCGCGCGCTGACGCCGAAAGGAA
TCCGTCAATGA

Upstream 100 bases:

>100_bases
ATGACCGATATGAACTATCAGGTCGACATCGACCAGCAGCCGGTGGACAAGGTGGCGGGAGACTTCCTGCGCAGCCATGG
CCTGATCTGAGGAGCCCATC

Downstream 100 bases:

>100_bases
TAGAACTCGACAAACTTGCCAAGACCTTCCACCAAAAGGATGGCACTGAAGTGCGTGCCGTCGATGCCGTCAGCCTGGCG
GTGCCGCGTGGCGAAATCTG

Product: putative glycine betaine/carnitine/choline ABC transporter, permease component: QAT family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 216; Mature: 216

Protein sequence:

>216_residues
MDLLTYLHHSWPTLLRLTGEHLALVGSAVGLAIVIGVPLGILITRHRFLAGPMLALATVVLTLPSIALFGLMIPIFARFG
HALGYLPAVTAVFLYSLLPIMRNTYTALANIDPGIQEAGRGIGMTTWQRMRLVDLPLAVPVILGGVRTAVVMNIGVATIA
AVIGAGGLGVLILQAISQSNMSKLAVGAVLVSLLAIVADACLQALQRALTPKGIRQ

Sequences:

>Translated_216_residues
MDLLTYLHHSWPTLLRLTGEHLALVGSAVGLAIVIGVPLGILITRHRFLAGPMLALATVVLTLPSIALFGLMIPIFARFG
HALGYLPAVTAVFLYSLLPIMRNTYTALANIDPGIQEAGRGIGMTTWQRMRLVDLPLAVPVILGGVRTAVVMNIGVATIA
AVIGAGGLGVLILQAISQSNMSKLAVGAVLVSLLAIVADACLQALQRALTPKGIRQ
>Mature_216_residues
MDLLTYLHHSWPTLLRLTGEHLALVGSAVGLAIVIGVPLGILITRHRFLAGPMLALATVVLTLPSIALFGLMIPIFARFG
HALGYLPAVTAVFLYSLLPIMRNTYTALANIDPGIQEAGRGIGMTTWQRMRLVDLPLAVPVILGGVRTAVVMNIGVATIA
AVIGAGGLGVLILQAISQSNMSKLAVGAVLVSLLAIVADACLQALQRALTPKGIRQ

Specific function: Involved in a high affinity multicomponent binding- protein-dependent transport system for glycine betaine, carnitine and choline; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1174

COG function: function code E; ABC-type proline/glycine betaine transport systems, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788449, Length=194, Percent_Identity=40.2061855670103, Blast_Score=120, Evalue=7e-29,
Organism=Escherichia coli, GI1788451, Length=197, Percent_Identity=39.0862944162437, Blast_Score=113, Evalue=9e-27,
Organism=Escherichia coli, GI1789033, Length=186, Percent_Identity=33.3333333333333, Blast_Score=87, Evalue=7e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 22622; Mature: 22622

Theoretical pI: Translated: 10.96; Mature: 10.96

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLLTYLHHSWPTLLRLTGEHLALVGSAVGLAIVIGVPLGILITRHRFLAGPMLALATVV
CHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LTLPSIALFGLMIPIFARFGHALGYLPAVTAVFLYSLLPIMRNTYTALANIDPGIQEAGR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCC
GIGMTTWQRMRLVDLPLAVPVILGGVRTAVVMNIGVATIAAVIGAGGLGVLILQAISQSN
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC
MSKLAVGAVLVSLLAIVADACLQALQRALTPKGIRQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MDLLTYLHHSWPTLLRLTGEHLALVGSAVGLAIVIGVPLGILITRHRFLAGPMLALATVV
CHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LTLPSIALFGLMIPIFARFGHALGYLPAVTAVFLYSLLPIMRNTYTALANIDPGIQEAGR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCC
GIGMTTWQRMRLVDLPLAVPVILGGVRTAVVMNIGVATIAAVIGAGGLGVLILQAISQSN
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC
MSKLAVGAVLVSLLAIVADACLQALQRALTPKGIRQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10216873; 9384377 [H]