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The map label for this gene is opuBB [H]

Identifier: 94309744

GI number: 94309744

Start: 875618

End: 876334

Strand: Direct

Name: opuBB [H]

Synonym: Rmet_0799

Alternate gene names: 94309744

Gene position: 875618-876334 (Clockwise)

Preceding gene: 94309737

Following gene: 94309745

Centisome position: 22.29

GC content: 66.53

Gene sequence:

>717_bases
ATGTCAAAGCAAACCATCCGGGCCTTTGCCTGGAGTGGCGTCGTTGCCGTCGCACTGGCGGGACTCGTCGCCTGGATTGG
CGTCGATGTGATCAGCCAGTACCAGGAACGCCTGTTCTACGATGTGGCGGATCACCTGCGCCTCGTGGCCATTTCGATGG
CGCTCGCGCTGGCCACCGGCATCCCCGCCGGAATCGGACTGAGCCGCCCCTGCATGCACCGCTGGGCCGACCGGCTGATG
CAGATCTTCAACGTCGGCAACACCGTGCCTTCGCTGGCGGTGCTGGCGCTGGCGCTGGCGGTGCTCGGCATTGGCGAACG
GCCCGCCATCCTGGCGCTGTGGCTGGCATCGCTGCTGCCGATCGTGCGCAATACCTACGAGGGCCTGCGCAATGTGTCGC
CTGCCTTGCTCGAAGCCGCGCGCGGCATCGGCATGACGCCGTGCCAGCAACTGATCCGCGTGGAACTGCCCAATGCGCTG
CCCGTGATCCTGGCCGGCGTGCGTATCAGCCTGGTGATCAATGTTGGCACCGTGCCGCTGTCATTCCTGATCGGTGCCAA
CAGCCTTGGCGAACTGATCTTCCCGGGCATCTACCTGAACAACCAGTCGCTCCTGCTGCTGGGTGCCGGCGCCACCGCGC
TGCTGGCCCTCACGCTGGACGCGCTGTTCGCCACCGCTGGCCATGTCTACCTGCGCCGCCGCGGGCTGGCACGCTGA

Upstream 100 bases:

>100_bases
GGCACCCCCAATCAACTCCGCCGGCCCCTTTGTTTTCCGCATTTCGGAAGTGGCGGCGAAATCTCTTTCGCTTTTCGTTC
CGGAAGAGGAGAGAGGGAAT

Downstream 100 bases:

>100_bases
GGAATCATCCATGAGATCCAACAAGAACCGACACCGTGCGCCGTTCTCCGAGAGCCGGCTCTACTGGCTGGTCGTCGCGC
TGGGCGCGGCGTTCGCCGCG

Product: putative ABC transporter permease: QAT family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 238; Mature: 237

Protein sequence:

>238_residues
MSKQTIRAFAWSGVVAVALAGLVAWIGVDVISQYQERLFYDVADHLRLVAISMALALATGIPAGIGLSRPCMHRWADRLM
QIFNVGNTVPSLAVLALALAVLGIGERPAILALWLASLLPIVRNTYEGLRNVSPALLEAARGIGMTPCQQLIRVELPNAL
PVILAGVRISLVINVGTVPLSFLIGANSLGELIFPGIYLNNQSLLLLGAGATALLALTLDALFATAGHVYLRRRGLAR

Sequences:

>Translated_238_residues
MSKQTIRAFAWSGVVAVALAGLVAWIGVDVISQYQERLFYDVADHLRLVAISMALALATGIPAGIGLSRPCMHRWADRLM
QIFNVGNTVPSLAVLALALAVLGIGERPAILALWLASLLPIVRNTYEGLRNVSPALLEAARGIGMTPCQQLIRVELPNAL
PVILAGVRISLVINVGTVPLSFLIGANSLGELIFPGIYLNNQSLLLLGAGATALLALTLDALFATAGHVYLRRRGLAR
>Mature_237_residues
SKQTIRAFAWSGVVAVALAGLVAWIGVDVISQYQERLFYDVADHLRLVAISMALALATGIPAGIGLSRPCMHRWADRLMQ
IFNVGNTVPSLAVLALALAVLGIGERPAILALWLASLLPIVRNTYEGLRNVSPALLEAARGIGMTPCQQLIRVELPNALP
VILAGVRISLVINVGTVPLSFLIGANSLGELIFPGIYLNNQSLLLLGAGATALLALTLDALFATAGHVYLRRRGLAR

Specific function: Involved in a high affinity multicomponent binding- protein-dependent transport system for choline; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1174

COG function: function code E; ABC-type proline/glycine betaine transport systems, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788449, Length=191, Percent_Identity=41.3612565445026, Blast_Score=124, Evalue=6e-30,
Organism=Escherichia coli, GI1788451, Length=217, Percent_Identity=35.4838709677419, Blast_Score=98, Evalue=4e-22,
Organism=Escherichia coli, GI1789033, Length=184, Percent_Identity=31.5217391304348, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI87081802, Length=116, Percent_Identity=37.9310344827586, Blast_Score=71, Evalue=8e-14,
Organism=Escherichia coli, GI1786564, Length=152, Percent_Identity=34.2105263157895, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 25260; Mature: 25128

Theoretical pI: Translated: 10.20; Mature: 10.20

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKQTIRAFAWSGVVAVALAGLVAWIGVDVISQYQERLFYDVADHLRLVAISMALALATG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
IPAGIGLSRPCMHRWADRLMQIFNVGNTVPSLAVLALALAVLGIGERPAILALWLASLLP
CCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
IVRNTYEGLRNVSPALLEAARGIGMTPCQQLIRVELPNALPVILAGVRISLVINVGTVPL
HHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHEEEEEEEECCHHH
SFLIGANSLGELIFPGIYLNNQSLLLLGAGATALLALTLDALFATAGHVYLRRRGLAR
HHHHCCCHHHHHHCCCEEECCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SKQTIRAFAWSGVVAVALAGLVAWIGVDVISQYQERLFYDVADHLRLVAISMALALATG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
IPAGIGLSRPCMHRWADRLMQIFNVGNTVPSLAVLALALAVLGIGERPAILALWLASLLP
CCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
IVRNTYEGLRNVSPALLEAARGIGMTPCQQLIRVELPNALPVILAGVRISLVINVGTVPL
HHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHEEEEEEEECCHHH
SFLIGANSLGELIFPGIYLNNQSLLLLGAGATALLALTLDALFATAGHVYLRRRGLAR
HHHHCCCHHHHHHCCCEEECCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7592481; 10216873; 9384377 [H]