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The map label for this gene is ihfB

Identifier: 94309668

GI number: 94309668

Start: 800834

End: 801241

Strand: Direct

Name: ihfB

Synonym: Rmet_0723

Alternate gene names: 94309668

Gene position: 800834-801241 (Clockwise)

Preceding gene: 94309667

Following gene: 94309669

Centisome position: 20.39

GC content: 62.01

Gene sequence:

>408_bases
ATGACCAAGTCAGAGCTCGTCGAAAAACTGGCTGCCCGCTTTCCGCAGTTGCTGCTGCGGGATGCGGACATCTCGGTGAA
AACGATTCTCGACGCGATGTCCGAGGCGCTGGCCGATGGCCATCGCATCGAAATCCGAGGTTTCGGCAGTTTTGGTTTGA
ACAAGCGGCCGCCCCGCGTGGGCCGCAACCCCAAGTCCGGCGAACGAGTGCTGGTACCCGAGAAACGGGTGCCGCACTTC
AAGGCTGGCAAGGAGTTGCGCGAACGCGTCGATCGTACGGTGACGCAGGGCGGAGGCATGAACGGCAACGGTCATGCCCC
GCACGGCAAAACCGGGCAATCGCAGCTTGGCTCGCAATCGCCGGCGTCGTTGCACGATGATGGTCAGCTCAATCTGGTCC
GGTCCTGA

Upstream 100 bases:

>100_bases
CGGCACGGCTGGCACGACCAACCTCGGCGCACTGCTGAAGGCCAAGCTCGGCCAGGACAACCAGTAATATCGAGCCGCGC
CGCGCGCAGCGAGACCGCCC

Downstream 100 bases:

>100_bases
TCGGACTGGAAGGCTTGCTGGCCTGACTGGAAGTCTGTTGGAAAGCGCTCCCTCGGGGGCGCTTTTTTGTTGCGCATCTG
TTGATCCCGTCTAGTCGCGA

Product: integration host factor subunit beta

Products: NA

Alternate protein names: IHF-beta

Number of amino acids: Translated: 135; Mature: 134

Protein sequence:

>135_residues
MTKSELVEKLAARFPQLLLRDADISVKTILDAMSEALADGHRIEIRGFGSFGLNKRPPRVGRNPKSGERVLVPEKRVPHF
KAGKELRERVDRTVTQGGGMNGNGHAPHGKTGQSQLGSQSPASLHDDGQLNLVRS

Sequences:

>Translated_135_residues
MTKSELVEKLAARFPQLLLRDADISVKTILDAMSEALADGHRIEIRGFGSFGLNKRPPRVGRNPKSGERVLVPEKRVPHF
KAGKELRERVDRTVTQGGGMNGNGHAPHGKTGQSQLGSQSPASLHDDGQLNLVRS
>Mature_134_residues
TKSELVEKLAARFPQLLLRDADISVKTILDAMSEALADGHRIEIRGFGSFGLNKRPPRVGRNPKSGERVLVPEKRVPHFK
AGKELRERVDRTVTQGGGMNGNGHAPHGKTGQSQLGSQSPASLHDDGQLNLVRS

Specific function: This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family

Homologues:

Organism=Escherichia coli, GI1787141, Length=91, Percent_Identity=53.8461538461538, Blast_Score=100, Evalue=2e-23,
Organism=Escherichia coli, GI1786644, Length=98, Percent_Identity=34.6938775510204, Blast_Score=69, Evalue=1e-13,
Organism=Escherichia coli, GI1790433, Length=90, Percent_Identity=33.3333333333333, Blast_Score=65, Evalue=1e-12,
Organism=Escherichia coli, GI1788005, Length=93, Percent_Identity=37.6344086021505, Blast_Score=60, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): IHFB_RALME (Q1LQG7)

Other databases:

- EMBL:   CP000352
- RefSeq:   YP_582878.1
- ProteinModelPortal:   Q1LQG7
- SMR:   Q1LQG7
- STRING:   Q1LQG7
- GeneID:   4037514
- GenomeReviews:   CP000352_GR
- KEGG:   rme:Rmet_0723
- eggNOG:   COG0776
- HOGENOM:   HBG705085
- OMA:   PEKYVPH
- PhylomeDB:   Q1LQG7
- ProtClustDB:   PRK00199
- BioCyc:   RMET266264:RMET_0723-MONOMER
- GO:   GO:0005694
- GO:   GO:0006350
- HAMAP:   MF_00381
- InterPro:   IPR000119
- InterPro:   IPR010992
- InterPro:   IPR005685
- Gene3D:   G3DSA:4.10.520.10
- PRINTS:   PR01727
- SMART:   SM00411
- TIGRFAMs:   TIGR00988

Pfam domain/function: PF00216 Bac_DNA_binding; SSF47729 IHF_like_DNA_bnd

EC number: NA

Molecular weight: Translated: 14683; Mature: 14552

Theoretical pI: Translated: 11.02; Mature: 11.02

Prosite motif: PS00045 HISTONE_LIKE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKSELVEKLAARFPQLLLRDADISVKTILDAMSEALADGHRIEIRGFGSFGLNKRPPRV
CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCC
GRNPKSGERVLVPEKRVPHFKAGKELRERVDRTVTQGGGMNGNGHAPHGKTGQSQLGSQS
CCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCCC
PASLHDDGQLNLVRS
CCCCCCCCCEEEECC
>Mature Secondary Structure 
TKSELVEKLAARFPQLLLRDADISVKTILDAMSEALADGHRIEIRGFGSFGLNKRPPRV
CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCC
GRNPKSGERVLVPEKRVPHFKAGKELRERVDRTVTQGGGMNGNGHAPHGKTGQSQLGSQS
CCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCCC
PASLHDDGQLNLVRS
CCCCCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA