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The map label for this gene is ompA [H]

Identifier: 94309657

GI number: 94309657

Start: 787434

End: 788087

Strand: Reverse

Name: ompA [H]

Synonym: Rmet_0712

Alternate gene names: 94309657

Gene position: 788087-787434 (Counterclockwise)

Preceding gene: 335055501

Following gene: 94309656

Centisome position: 20.06

GC content: 60.55

Gene sequence:

>654_bases
ATGAAAAAATTTGCCAAGCTCGCGCTCGTTGCAGCTACCGCAGTAATGGCTGCATCCGCTCAAGCCCAGTCCGTCCCCTA
TGAAAAGAAGGCAGTGAACGACAACTGGGGCAACGGTACGAGCGAGTACGTGTGGAAGAATGGCACGAACGAGCTCTGCT
GGCGCGACAGCTCCTGGACCCCGGCAACGGCCAATGCACAGTGCGATGGCGCGCTGGCTCCGGCTGCTGCGGCTCCGGCC
CCGACCCCGGTGGCACCGCCGGTAGTGTCGAGCGAGAAGGTCACTTTCGCTGCTGACACCCTGTTCGACTTCGACAAGGC
TGTTCTGAAGCCCGAAGGCAAGGCCAAGCTGGACGACCTGGTTTCGAAGCTGCAAGGCATCACCCTGGAAGTGATCATCG
CTGTTGGTCACACCGATTCGTTCGGTTCGGACAAGTACAACGATCGCCTGTCGATCCGTCGTGCTGAGTCGGTCAAGGCC
TACCTGGTGAGCAAGGGCGTTGAAGCCAACCGCGTGTACACCGAAGGCAAGGGCAAGCGTCAGCTGAAGGTTGATCCGAA
GTCGTGCAAGGGCAACCGCACTGCTCAGATCGCCTGCCAGCAGCCGAACCGTCGCGTGGAAGTCGAAGTGGTCGGCACCC
GCAGCGCACGTTAA

Upstream 100 bases:

>100_bases
TGCTCCACGTCGAGAATGTTATACTCCGAAGAATGTATGACTTGTTTTCGTCCATTTGCTCGCAGTAACCCTGCGGTGAT
CTCATCCTGAGAGGAGAAAT

Downstream 100 bases:

>100_bases
TCGGATCCTCTCCGATGAAAAAAAGCCCAGCGCAAGCTGGGCTTTTTTTTTGGTAAAGTTGCCGCAGACTTCTCACCTGA
TTTGCCGCTCGCCGGCACCC

Product: outer membrane protein or related peptidoglycan-associated (lipo)protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 217; Mature: 217

Protein sequence:

>217_residues
MKKFAKLALVAATAVMAASAQAQSVPYEKKAVNDNWGNGTSEYVWKNGTNELCWRDSSWTPATANAQCDGALAPAAAAPA
PTPVAPPVVSSEKVTFAADTLFDFDKAVLKPEGKAKLDDLVSKLQGITLEVIIAVGHTDSFGSDKYNDRLSIRRAESVKA
YLVSKGVEANRVYTEGKGKRQLKVDPKSCKGNRTAQIACQQPNRRVEVEVVGTRSAR

Sequences:

>Translated_217_residues
MKKFAKLALVAATAVMAASAQAQSVPYEKKAVNDNWGNGTSEYVWKNGTNELCWRDSSWTPATANAQCDGALAPAAAAPA
PTPVAPPVVSSEKVTFAADTLFDFDKAVLKPEGKAKLDDLVSKLQGITLEVIIAVGHTDSFGSDKYNDRLSIRRAESVKA
YLVSKGVEANRVYTEGKGKRQLKVDPKSCKGNRTAQIACQQPNRRVEVEVVGTRSAR
>Mature_217_residues
MKKFAKLALVAATAVMAASAQAQSVPYEKKAVNDNWGNGTSEYVWKNGTNELCWRDSSWTPATANAQCDGALAPAAAAPA
PTPVAPPVVSSEKVTFAADTLFDFDKAVLKPEGKAKLDDLVSKLQGITLEVIIAVGHTDSFGSDKYNDRLSIRRAESVKA
YLVSKGVEANRVYTEGKGKRQLKVDPKSCKGNRTAQIACQQPNRRVEVEVVGTRSAR

Specific function: Structural protein that may protect the integrity of the bacterium [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI1787191, Length=130, Percent_Identity=43.0769230769231, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI48994946, Length=109, Percent_Identity=36.697247706422, Blast_Score=61, Evalue=7e-11,

Paralogues:

None

Copy number: 140 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 2300 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 3380 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1480 Molecules/Cell In: Growth Phase, Mi

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001035
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 23299; Mature: 23299

Theoretical pI: Translated: 9.76; Mature: 9.76

Prosite motif: PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKFAKLALVAATAVMAASAQAQSVPYEKKAVNDNWGNGTSEYVWKNGTNELCWRDSSWT
CCHHHHHHHHHHHHHHHHCCHHHCCCCHHHCCCCCCCCCCCCEEEECCCCCEEEECCCCC
PATANAQCDGALAPAAAAPAPTPVAPPVVSSEKVTFAADTLFDFDKAVLKPEGKAKLDDL
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHCCCCCCCHHHHH
VSKLQGITLEVIIAVGHTDSFGSDKYNDRLSIRRAESVKAYLVSKGVEANRVYTEGKGKR
HHHHCCCEEEEEEEECCCCCCCCCCCCCCEEEEHHHHHHHHHHHCCCCCCEEEECCCCCE
QLKVDPKSCKGNRTAQIACQQPNRRVEVEVVGTRSAR
EEEECCCCCCCCCEEEEEECCCCCEEEEEEECCCCCC
>Mature Secondary Structure
MKKFAKLALVAATAVMAASAQAQSVPYEKKAVNDNWGNGTSEYVWKNGTNELCWRDSSWT
CCHHHHHHHHHHHHHHHHCCHHHCCCCHHHCCCCCCCCCCCCEEEECCCCCEEEECCCCC
PATANAQCDGALAPAAAAPAPTPVAPPVVSSEKVTFAADTLFDFDKAVLKPEGKAKLDDL
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHCCCCCCCHHHHH
VSKLQGITLEVIIAVGHTDSFGSDKYNDRLSIRRAESVKAYLVSKGVEANRVYTEGKGKR
HHHHCCCEEEEEEEECCCCCCCCCCCCCCEEEEHHHHHHHHHHHCCCCCCEEEECCCCCE
QLKVDPKSCKGNRTAQIACQQPNRRVEVEVVGTRSAR
EEEECCCCCCCCCEEEEEECCCCCEEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1447140 [H]