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The map label for this gene is ycaJ [H]

Identifier: 94309639

GI number: 94309639

Start: 765597

End: 766934

Strand: Direct

Name: ycaJ [H]

Synonym: Rmet_0694

Alternate gene names: 94309639

Gene position: 765597-766934 (Clockwise)

Preceding gene: 94309638

Following gene: 94309640

Centisome position: 19.49

GC content: 66.74

Gene sequence:

>1338_bases
GTGGCGGATTCGCTGTTCTCCGACCCCCCCGACCGTTCCCGAATGCCGCTGGCCGAGCGCCTGCGCCCGCGCAATATCGA
CGAAGTCATCGGCCAGCAGCACCTGCTCGGCCCAGGCAAGCCGCTGCGCGTGGCGTTCGAGTCGGGTGAGCCGCATTCGA
TGATCCTCTGGGGCCCGCCCGGCGTGGGCAAGACCACGCTGGCCCGGCTGATGGCCAATGCGTTCGATGCCGAGTTCATT
GCGCTGTCGGCCGTGCTGTCGGGAGTCAAGGATATTCGCGAGGCGGTGGAGCGGGCCGAGCAGTTCCGCGCGCATGGCCG
GCGCACGCTGGTGTTCGTCGACGAGGTGCATCGCTTCAACAAGAGCCAGCAGGACGCGTTCCTGCCGCACGTGGAAAGCG
GGCTGTTCACGTTTATCGGCGCCACCACTGAGAATCCGTCGTTCGAGGTCAATGGCGCCTTGCTGTCTCGGGCGGCCGTC
TACGTGCTCAAGAGCCTGAACGAAGACGAACTCAAGCAGCTCGTGCTGCGTGCCAGCGAGGAACTCGGTGGCATTCGCTG
GGACGACGAGGCAATGGGGCTGATTGTCGCCTCGGCCGACGGCGATGGCCGCAAGCTGCTCAACAATATCGAGATCGTGG
CGCGCGCGGCTCGCAATGCCGGTGTGGATGCGGTGGATACGGCGCTGTTGGGCAGCGCGCTATCGGAAAACCTGCGTCGT
TTCGACAAGGGTGGCGACGCGTTCTACGACCAGATCAGCGCCTTGCACAAGTCCGTGCGCGGTTCCGACCCGGATGGCGC
GCTGTACTGGTTCTGCCGGATGCTCGATGGTGGCGCCGACCCGCGTTACCTGGCGCGCCGGATCGTGCGGATGGCGTGGG
AGGACATCGGCCTGGCCGATCCGCGCGCGGCACGGATCACGCTCGATGCCGCGGAGACCTACGAGCGGCTGGGGTCGCCG
GAGGGCGAGCTGGCATTGGCGCAGGCGCTGCTGTACCTGGCCGTGGCGCCAAAGTCGAACGCGGGCTACAACGCGTACAA
CGCGGCGCGTGCCTTTGTCGCCAAGGACAAGTCGCGGCCCGTGCCCGTGCATCTGCGCAACGCGCCGACAAAACTGATGA
AGGAGCTTGGCTACGGCCATGCGTATCGCTATGCGCATGACGAGCCGGAAGCCTACGCGGCGGGCGAGCACTACCTGCCC
GACGATCTGCGCAGCCAGGACTGGTACCAGCCCACGCCGCGCGGGCTGGAAGGCAAGATCGGCGACAAGCTGCGGCATCT
GCGCGATCTGGACGACGCCTGGCATCGCGAGCAGCGCGGCAAGTCCGGCAAGGACTGA

Upstream 100 bases:

>100_bases
ATGGCGTGGGGCGGGCCGCGGCAAGCGGCGCCGATGGTCTACACTGTGGCGTTCGCAAGCCGCTTCCGGCGGCCGCACCA
GATTGAGAGGCCCAAGTACC

Downstream 100 bases:

>100_bases
GCTGGGGTCGAAGGGGGTGAACGGGGCGGCGAGCAGGGGCCCGGATAACTCTCAAAGTGTGGAGCAGAAGGCAAAATCCA
GCCGGATTTGCTCCCGGCGG

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 445; Mature: 444

Protein sequence:

>445_residues
MADSLFSDPPDRSRMPLAERLRPRNIDEVIGQQHLLGPGKPLRVAFESGEPHSMILWGPPGVGKTTLARLMANAFDAEFI
ALSAVLSGVKDIREAVERAEQFRAHGRRTLVFVDEVHRFNKSQQDAFLPHVESGLFTFIGATTENPSFEVNGALLSRAAV
YVLKSLNEDELKQLVLRASEELGGIRWDDEAMGLIVASADGDGRKLLNNIEIVARAARNAGVDAVDTALLGSALSENLRR
FDKGGDAFYDQISALHKSVRGSDPDGALYWFCRMLDGGADPRYLARRIVRMAWEDIGLADPRAARITLDAAETYERLGSP
EGELALAQALLYLAVAPKSNAGYNAYNAARAFVAKDKSRPVPVHLRNAPTKLMKELGYGHAYRYAHDEPEAYAAGEHYLP
DDLRSQDWYQPTPRGLEGKIGDKLRHLRDLDDAWHREQRGKSGKD

Sequences:

>Translated_445_residues
MADSLFSDPPDRSRMPLAERLRPRNIDEVIGQQHLLGPGKPLRVAFESGEPHSMILWGPPGVGKTTLARLMANAFDAEFI
ALSAVLSGVKDIREAVERAEQFRAHGRRTLVFVDEVHRFNKSQQDAFLPHVESGLFTFIGATTENPSFEVNGALLSRAAV
YVLKSLNEDELKQLVLRASEELGGIRWDDEAMGLIVASADGDGRKLLNNIEIVARAARNAGVDAVDTALLGSALSENLRR
FDKGGDAFYDQISALHKSVRGSDPDGALYWFCRMLDGGADPRYLARRIVRMAWEDIGLADPRAARITLDAAETYERLGSP
EGELALAQALLYLAVAPKSNAGYNAYNAARAFVAKDKSRPVPVHLRNAPTKLMKELGYGHAYRYAHDEPEAYAAGEHYLP
DDLRSQDWYQPTPRGLEGKIGDKLRHLRDLDDAWHREQRGKSGKD
>Mature_444_residues
ADSLFSDPPDRSRMPLAERLRPRNIDEVIGQQHLLGPGKPLRVAFESGEPHSMILWGPPGVGKTTLARLMANAFDAEFIA
LSAVLSGVKDIREAVERAEQFRAHGRRTLVFVDEVHRFNKSQQDAFLPHVESGLFTFIGATTENPSFEVNGALLSRAAVY
VLKSLNEDELKQLVLRASEELGGIRWDDEAMGLIVASADGDGRKLLNNIEIVARAARNAGVDAVDTALLGSALSENLRRF
DKGGDAFYDQISALHKSVRGSDPDGALYWFCRMLDGGADPRYLARRIVRMAWEDIGLADPRAARITLDAAETYERLGSPE
GELALAQALLYLAVAPKSNAGYNAYNAARAFVAKDKSRPVPVHLRNAPTKLMKELGYGHAYRYAHDEPEAYAAGEHYLPD
DLRSQDWYQPTPRGLEGKIGDKLRHLRDLDDAWHREQRGKSGKD

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rarA family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=440, Percent_Identity=41.1363636363636, Blast_Score=323, Evalue=2e-88,
Organism=Homo sapiens, GI18426904, Length=440, Percent_Identity=36.8181818181818, Blast_Score=267, Evalue=2e-71,
Organism=Escherichia coli, GI1787119, Length=439, Percent_Identity=56.0364464692483, Blast_Score=463, Evalue=1e-131,
Organism=Saccharomyces cerevisiae, GI6324111, Length=447, Percent_Identity=39.1498881431767, Blast_Score=300, Evalue=3e-82,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021886 [H]

Pfam domain/function: PF00004 AAA; PF12002 MgsA_C [H]

EC number: NA

Molecular weight: Translated: 49222; Mature: 49091

Theoretical pI: Translated: 6.39; Mature: 6.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADSLFSDPPDRSRMPLAERLRPRNIDEVIGQQHLLGPGKPLRVAFESGEPHSMILWGPP
CCCCCCCCCCCCCCCCHHHHCCCCCHHHHHCHHHCCCCCCCEEEEEECCCCCEEEEECCC
GVGKTTLARLMANAFDAEFIALSAVLSGVKDIREAVERAEQFRAHGRRTLVFVDEVHRFN
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHCC
KSQQDAFLPHVESGLFTFIGATTENPSFEVNGALLSRAAVYVLKSLNEDELKQLVLRASE
CCCCHHCCCHHHCCCEEEEECCCCCCCEEECHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
ELGGIRWDDEAMGLIVASADGDGRKLLNNIEIVARAARNAGVDAVDTALLGSALSENLRR
HHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
FDKGGDAFYDQISALHKSVRGSDPDGALYWFCRMLDGGADPRYLARRIVRMAWEDIGLAD
HHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCC
PRAARITLDAAETYERLGSPEGELALAQALLYLAVAPKSNAGYNAYNAARAFVAKDKSRP
CCCEEEEECHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCC
VPVHLRNAPTKLMKELGYGHAYRYAHDEPEAYAAGEHYLPDDLRSQDWYQPTPRGLEGKI
CCEEECCCHHHHHHHCCCCCEECCCCCCCCHHCCCCCCCCHHHCCCCCCCCCCCCCCCCH
GDKLRHLRDLDDAWHREQRGKSGKD
HHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
ADSLFSDPPDRSRMPLAERLRPRNIDEVIGQQHLLGPGKPLRVAFESGEPHSMILWGPP
CCCCCCCCCCCCCCCHHHHCCCCCHHHHHCHHHCCCCCCCEEEEEECCCCCEEEEECCC
GVGKTTLARLMANAFDAEFIALSAVLSGVKDIREAVERAEQFRAHGRRTLVFVDEVHRFN
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHCC
KSQQDAFLPHVESGLFTFIGATTENPSFEVNGALLSRAAVYVLKSLNEDELKQLVLRASE
CCCCHHCCCHHHCCCEEEEECCCCCCCEEECHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
ELGGIRWDDEAMGLIVASADGDGRKLLNNIEIVARAARNAGVDAVDTALLGSALSENLRR
HHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
FDKGGDAFYDQISALHKSVRGSDPDGALYWFCRMLDGGADPRYLARRIVRMAWEDIGLAD
HHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCC
PRAARITLDAAETYERLGSPEGELALAQALLYLAVAPKSNAGYNAYNAARAFVAKDKSRP
CCCEEEEECHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCC
VPVHLRNAPTKLMKELGYGHAYRYAHDEPEAYAAGEHYLPDDLRSQDWYQPTPRGLEGKI
CCEEECCCHHHHHHHCCCCCEECCCCCCCCHHCCCCCCCCHHHCCCCCCCCCCCCCCCCH
GDKLRHLRDLDDAWHREQRGKSGKD
HHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12704232 [H]