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The map label for this gene is yfcN [C]

Identifier: 94309628

GI number: 94309628

Start: 755491

End: 756165

Strand: Reverse

Name: yfcN [C]

Synonym: Rmet_0683

Alternate gene names: 94309628

Gene position: 756165-755491 (Counterclockwise)

Preceding gene: 94309629

Following gene: 94309627

Centisome position: 19.25

GC content: 67.41

Gene sequence:

>675_bases
ATGTCGCACGGCGCCAAACCCACCTCCAAGCCCCCCCACCGCATGGGCCTGCACGATCTGGCCACGGTCCGCGACGGCCT
CAAGGCCGACGCCGAGCGCCGCGAAGCCGAACGGCAAGCCGCCGAGGCCGCCGCCAGGCGCGCCGAGGAAGAAGCCAACG
TGTTCCGCACCAGCATCGGGCAGGTCAGCAACCTGCGCGACCGCAACCGCGTCGAGCATCCCGTGAAGAAGCCGAACCCG
GAGCCGGTGCAAACCCGTCTCAACGACAAGGCCGTGCTCGAGGCGTCGCTGTCCGATGAATTCGATGTCGAGAACCTGCT
CGATGTCGACGAGACGATGTCGTTCCGGCGTCCCGGCATCGGCGAGGACGTCATCAAGAAGCTGCGTCGCGGCGAATGGG
TGCCGCAGGACAAGGTCGACCTGCACGGCCTGCGCTCCGACGAGGCCCGCGAGGCGCTGGCCAACTTTCTCCGCCGATCG
GTGCGCAATGGCGTGCGATGCGTGCGCGTGATTCACGGCAAAGGCATTGGGTCGCCGGACAAGCTGCCGGTGCTCAAGGG
CAAGGTACGTAGCTGGCTGGTCCAGAAGGAAGAAGTGATCGCCTTCGTCCAGGCACGCGAATCGCAGGGCGGCGCCGGCG
CGCTGATGGTCCTGCTGCGCCAGCCCAAGACCTGA

Upstream 100 bases:

>100_bases
CACTAGCGTCACCGATTCGGGCCGGTTTTTACCGGCCCGATTCCTTATTGGATTCCTTATAATCGACGCCGAGCCCCCTG
CCCCCTTAGAGAATCGCTCC

Downstream 100 bases:

>100_bases
GAACCGGATGCAATATCACCTGCCGTTCGATTTGCTGATGGGGCGACTGCCCCTGATCCTGCACGTGATGGAAGTGATCG
GCGTGCTGGCGTTCGCCGTC

Product: Smr protein/MutS2 C-terminal

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 224; Mature: 223

Protein sequence:

>224_residues
MSHGAKPTSKPPHRMGLHDLATVRDGLKADAERREAERQAAEAAARRAEEEANVFRTSIGQVSNLRDRNRVEHPVKKPNP
EPVQTRLNDKAVLEASLSDEFDVENLLDVDETMSFRRPGIGEDVIKKLRRGEWVPQDKVDLHGLRSDEAREALANFLRRS
VRNGVRCVRVIHGKGIGSPDKLPVLKGKVRSWLVQKEEVIAFVQARESQGGAGALMVLLRQPKT

Sequences:

>Translated_224_residues
MSHGAKPTSKPPHRMGLHDLATVRDGLKADAERREAERQAAEAAARRAEEEANVFRTSIGQVSNLRDRNRVEHPVKKPNP
EPVQTRLNDKAVLEASLSDEFDVENLLDVDETMSFRRPGIGEDVIKKLRRGEWVPQDKVDLHGLRSDEAREALANFLRRS
VRNGVRCVRVIHGKGIGSPDKLPVLKGKVRSWLVQKEEVIAFVQARESQGGAGALMVLLRQPKT
>Mature_223_residues
SHGAKPTSKPPHRMGLHDLATVRDGLKADAERREAERQAAEAAARRAEEEANVFRTSIGQVSNLRDRNRVEHPVKKPNPE
PVQTRLNDKAVLEASLSDEFDVENLLDVDETMSFRRPGIGEDVIKKLRRGEWVPQDKVDLHGLRSDEAREALANFLRRSV
RNGVRCVRVIHGKGIGSPDKLPVLKGKVRSWLVQKEEVIAFVQARESQGGAGALMVLLRQPKT

Specific function: Unknown

COG id: COG2840

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Smr domain [H]

Homologues:

Organism=Escherichia coli, GI1788671, Length=173, Percent_Identity=32.3699421965318, Blast_Score=88, Evalue=5e-19,
Organism=Escherichia coli, GI1787602, Length=126, Percent_Identity=30.952380952381, Blast_Score=72, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002625
- InterPro:   IPR022990 [H]

Pfam domain/function: PF01713 Smr [H]

EC number: NA

Molecular weight: Translated: 25038; Mature: 24907

Theoretical pI: Translated: 10.47; Mature: 10.47

Prosite motif: PS50828 SMR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSHGAKPTSKPPHRMGLHDLATVRDGLKADAERREAERQAAEAAARRAEEEANVFRTSIG
CCCCCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QVSNLRDRNRVEHPVKKPNPEPVQTRLNDKAVLEASLSDEFDVENLLDVDETMSFRRPGI
HHHHHHHHHHHHCCCCCCCCCHHHHHCCCHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCC
GEDVIKKLRRGEWVPQDKVDLHGLRSDEAREALANFLRRSVRNGVRCVRVIHGKGIGSPD
CHHHHHHHHCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHEEHHHHCCCCCCCC
KLPVLKGKVRSWLVQKEEVIAFVQARESQGGAGALMVLLRQPKT
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCC
>Mature Secondary Structure 
SHGAKPTSKPPHRMGLHDLATVRDGLKADAERREAERQAAEAAARRAEEEANVFRTSIG
CCCCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QVSNLRDRNRVEHPVKKPNPEPVQTRLNDKAVLEASLSDEFDVENLLDVDETMSFRRPGI
HHHHHHHHHHHHCCCCCCCCCHHHHHCCCHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCC
GEDVIKKLRRGEWVPQDKVDLHGLRSDEAREALANFLRRSVRNGVRCVRVIHGKGIGSPD
CHHHHHHHHCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHEEHHHHCCCCCCCC
KLPVLKGKVRSWLVQKEEVIAFVQARESQGGAGALMVLLRQPKT
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA