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The map label for this gene is kdsD2 [H]

Identifier: 94309252

GI number: 94309252

Start: 322374

End: 323357

Strand: Reverse

Name: kdsD2 [H]

Synonym: Rmet_0307

Alternate gene names: 94309252

Gene position: 323357-322374 (Counterclockwise)

Preceding gene: 94309254

Following gene: 94309251

Centisome position: 8.23

GC content: 67.78

Gene sequence:

>984_bases
ATGATAGCCAATTTCGATGCGGATCGAGCACTCAGGCTCGCCCGCCAGACCCTTGAAATCGAAGCCGAGGCCGTTTCCGC
GCTGGCCGGAAGGCTCACGCCCGCGTTCACGACGGCGGTGGAGATGATTCTCGGCTGCACCGGGCGCGTCGTCGTGTCCG
GCATCGGCAAGTCGGGCCATATCGGCCGCAAAGTGGCCGCCACGCTGGCATCCACCGGCACGCCGTCCTTCTTCGTGCAT
CCCGCCGAGGCCAGCCATGGCGACCTCGGCATGATCACGCGCGACGACGTCCTGATCGCCTTCTCCAATTCCGGTGAAAC
GGCCGAACTGCTGGCGATCATTCCGATCGTCAAGCGCATCGGCGCCGGGTTGATCTCGATCACCGGCAACGCCGAATCGA
ACCTAGCCAAACTGTCCAACGCCCACCTCGACGGTGCTGTGGCGCAGGAGGCCTGCCCGCTGAACCTGGCCCCGACCGCC
AGCACCACCGCCGCGCTGGCGCTGGGCGACGCGCTGGCCGTGGCGGTGCTCGACGCGCGCGGCTTTGGCGAAGACGACTT
CGCGCGCTCGCACCCCGGCGGCGCGCTGGGCCGCAAGCTGCTCACCCACGTGCGCGACGTGATGCGCACCGGCAATGCGG
TGCCTGCGGTGCGTGAAAGCACGCCGCTGGCCCAGGCCCTGATGGAAATCACCCGCAAGGGCATGGCCATGACCGCCGTG
GTGGACCCCGACGGCCGCGCCGTGGGCGTGTTCACCGACGGCGACCTGCGCCGCCTGCTGGAAACGCCGCGCGACTGGAA
GACCGTGCCGATCGGCGAGGTCATGCACCGCAACCCCCACACCGTGCATCTCGACAAGCTCGCCGTGGAAGCCGTGCAGA
TCATGGAAACGAACCGCATCAACCAGTTGCTCGTCGTCGATGACGATGGCCACCTGGCGGGCGCGCTCCACATCCATGAC
CTGACCCGGGCCAAGGTCATCTGA

Upstream 100 bases:

>100_bases
CCCTGCCGGCGAAACACGGCAAGCGCGGCGGTCGTCAAGGCGGCAAAAGGCTGGAAAGCCGGGCCAGACGCCATCGCATT
CGTTGGTATACTCCGACGCC

Downstream 100 bases:

>100_bases
TCAATGCCAGAGTTCCTGTCCAGAATCACCGGCCTGATCATGCGGCTGCTGCCGCTGCTGCTGATGGCGATCGTTGCCGG
CAGCACGTTCTGGCTCGTGC

Product: D-arabinose 5-phosphate isomerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 327; Mature: 327

Protein sequence:

>327_residues
MIANFDADRALRLARQTLEIEAEAVSALAGRLTPAFTTAVEMILGCTGRVVVSGIGKSGHIGRKVAATLASTGTPSFFVH
PAEASHGDLGMITRDDVLIAFSNSGETAELLAIIPIVKRIGAGLISITGNAESNLAKLSNAHLDGAVAQEACPLNLAPTA
STTAALALGDALAVAVLDARGFGEDDFARSHPGGALGRKLLTHVRDVMRTGNAVPAVRESTPLAQALMEITRKGMAMTAV
VDPDGRAVGVFTDGDLRRLLETPRDWKTVPIGEVMHRNPHTVHLDKLAVEAVQIMETNRINQLLVVDDDGHLAGALHIHD
LTRAKVI

Sequences:

>Translated_327_residues
MIANFDADRALRLARQTLEIEAEAVSALAGRLTPAFTTAVEMILGCTGRVVVSGIGKSGHIGRKVAATLASTGTPSFFVH
PAEASHGDLGMITRDDVLIAFSNSGETAELLAIIPIVKRIGAGLISITGNAESNLAKLSNAHLDGAVAQEACPLNLAPTA
STTAALALGDALAVAVLDARGFGEDDFARSHPGGALGRKLLTHVRDVMRTGNAVPAVRESTPLAQALMEITRKGMAMTAV
VDPDGRAVGVFTDGDLRRLLETPRDWKTVPIGEVMHRNPHTVHLDKLAVEAVQIMETNRINQLLVVDDDGHLAGALHIHD
LTRAKVI
>Mature_327_residues
MIANFDADRALRLARQTLEIEAEAVSALAGRLTPAFTTAVEMILGCTGRVVVSGIGKSGHIGRKVAATLASTGTPSFFVH
PAEASHGDLGMITRDDVLIAFSNSGETAELLAIIPIVKRIGAGLISITGNAESNLAKLSNAHLDGAVAQEACPLNLAPTA
STTAALALGDALAVAVLDARGFGEDDFARSHPGGALGRKLLTHVRDVMRTGNAVPAVRESTPLAQALMEITRKGMAMTAV
VDPDGRAVGVFTDGDLRRLLETPRDWKTVPIGEVMHRNPHTVHLDKLAVEAVQIMETNRINQLLVVDDDGHLAGALHIHD
LTRAKVI

Specific function: Catalyzes the interconversion of D-arabinose 5-phosphate and D-ribulose 5-phosphate [H]

COG id: COG0794

COG function: function code M; Predicted sugar phosphate isomerase involved in capsule formation

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SIS domain [H]

Homologues:

Organism=Escherichia coli, GI1789588, Length=323, Percent_Identity=52.9411764705882, Blast_Score=332, Evalue=3e-92,
Organism=Escherichia coli, GI87082151, Length=317, Percent_Identity=48.2649842271293, Blast_Score=280, Evalue=9e-77,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000644
- InterPro:   IPR004800
- InterPro:   IPR001347 [H]

Pfam domain/function: PF00571 CBS; PF01380 SIS [H]

EC number: =5.3.1.13 [H]

Molecular weight: Translated: 34344; Mature: 34344

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIANFDADRALRLARQTLEIEAEAVSALAGRLTPAFTTAVEMILGCTGRVVVSGIGKSGH
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEEEECCCCCC
IGRKVAATLASTGTPSFFVHPAEASHGDLGMITRDDVLIAFSNSGETAELLAIIPIVKRI
CHHHHHHHHHCCCCCCEEEECCCCCCCCEEEEEECCEEEEECCCCCHHHHHHHHHHHHHH
GAGLISITGNAESNLAKLSNAHLDGAVAQEACPLNLAPTASTTAALALGDALAVAVLDAR
CCCEEEEECCCCHHHHHHHCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHEEEEEECC
GFGEDDFARSHPGGALGRKLLTHVRDVMRTGNAVPAVRESTPLAQALMEITRKGMAMTAV
CCCCCCHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEE
VDPDGRAVGVFTDGDLRRLLETPRDWKTVPIGEVMHRNPHTVHLDKLAVEAVQIMETNRI
ECCCCCEEEEEECHHHHHHHCCCCCCCCCCHHHHHCCCCCEEEHHHHHHHHHHHHHHCCC
NQLLVVDDDGHLAGALHIHDLTRAKVI
CEEEEEECCCCEEEEEEEEHHHHHCCC
>Mature Secondary Structure
MIANFDADRALRLARQTLEIEAEAVSALAGRLTPAFTTAVEMILGCTGRVVVSGIGKSGH
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEEEECCCCCC
IGRKVAATLASTGTPSFFVHPAEASHGDLGMITRDDVLIAFSNSGETAELLAIIPIVKRI
CHHHHHHHHHCCCCCCEEEECCCCCCCCEEEEEECCEEEEECCCCCHHHHHHHHHHHHHH
GAGLISITGNAESNLAKLSNAHLDGAVAQEACPLNLAPTASTTAALALGDALAVAVLDAR
CCCEEEEECCCCHHHHHHHCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHEEEEEECC
GFGEDDFARSHPGGALGRKLLTHVRDVMRTGNAVPAVRESTPLAQALMEITRKGMAMTAV
CCCCCCHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEE
VDPDGRAVGVFTDGDLRRLLETPRDWKTVPIGEVMHRNPHTVHLDKLAVEAVQIMETNRI
ECCCCCEEEEEECHHHHHHHCCCCCCCCCCHHHHHCCCCCEEEHHHHHHHHHHHHHHCCC
NQLLVVDDDGHLAGALHIHDLTRAKVI
CEEEEEECCCCEEEEEEEEHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]