Click here to switch to the map view.

The map label for this gene is ycgM [C]

Identifier: 94309224

GI number: 94309224

Start: 295395

End: 296195

Strand: Direct

Name: ycgM [C]

Synonym: Rmet_0279

Alternate gene names: 94309224

Gene position: 295395-296195 (Clockwise)

Preceding gene: 94309218

Following gene: 94309225

Centisome position: 7.52

GC content: 64.67

Gene sequence:

>801_bases
GTGTATCCTTTGCCCCTGCCGCGGCCCACCCGACTGGGCACGACCGGACACGACACCGGGTGCGGCGTTCCATCAAAAAA
GAGAAAGCTGGAGAGTTGGATGACCGAATTCGTCTTCGCGCCGCAAGCCCCCGTCGGTGTTCCCGTGCGTGGTGGCAGCG
CAAGTTTCCCCGTGCGCCGGGTCTACTGCGTGGGCCGGAACTATGCCGCCCATGCCCGTGAAATGGGTTCGGACCCCGAC
CGCGAACCGCCGTTCTTCTTCTGCAAGCCGTCCGACGCGGTCAGCTACGTGGCCGACAAGACCGAAGGCGCCTTCCCGTA
CCCGCCGGGCACGGGCAATTGCCACTACGAGGTGGAACTGGTTGTCGCCATTGGCAAGGGCGGCCGCGACATCCCGGTCG
AGCAGGCCGCCAGCCATGTCTTCGGCTATGCCATCGGCCTCGACATGACACGCCGCGACCTGCAGAACGAGTCGAAGAAA
ACCGGCCGCCCTTGGGAAACCGGCAAGGCATTCGACAAGTCCGCGCCGATCGGCCCGATCGTGCCGGTCTCGGCCATCGG
CCACCCGGCAAAGGGCGCCGTGACGCTCGCCGTCAATGGTGTGGAGAAGCAGCGTGGCGATCTGTCGGACCTGATCTGGT
CAGTGCCTGAAATGGTGTCGTACCTGTCGAAGCTGTTCGAACTGCAGCCGGGCGACCTGATCTACAGCGGAACGCCTGAA
GGCGTGGGGCCGGTGGTGAAGGGCGACGTCATGCAATGCCACATCGAAGGTGTGGGCGACCTGACCGTCAAGGTGGTGTG
A

Upstream 100 bases:

>100_bases
AAGGGGGCGGATGGCGTCGGGTCATGGAGGGCGCTTGGTTGCGGTGCAATATGCAAGATTCGCGCCGGGTCTGCTTCCAC
TGTATGCCACCGTATTCAAG

Downstream 100 bases:

>100_bases
GGCGATGCTCGAACTCCATAGCTACTTCCGCAGCTCGGCGTCGTTCAGGGTGCGTATCGCGCTGAACCTGAAGGGCTTGC
CCTATGACTACAAGGGTGTG

Product: putative 2-keto-4-pentenoate hydratase / 2-oxohepta-3-ene-1,7-dioic acid hydratase (Catechol pathway) oxidoreductase protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 266; Mature: 266

Protein sequence:

>266_residues
MYPLPLPRPTRLGTTGHDTGCGVPSKKRKLESWMTEFVFAPQAPVGVPVRGGSASFPVRRVYCVGRNYAAHAREMGSDPD
REPPFFFCKPSDAVSYVADKTEGAFPYPPGTGNCHYEVELVVAIGKGGRDIPVEQAASHVFGYAIGLDMTRRDLQNESKK
TGRPWETGKAFDKSAPIGPIVPVSAIGHPAKGAVTLAVNGVEKQRGDLSDLIWSVPEMVSYLSKLFELQPGDLIYSGTPE
GVGPVVKGDVMQCHIEGVGDLTVKVV

Sequences:

>Translated_266_residues
MYPLPLPRPTRLGTTGHDTGCGVPSKKRKLESWMTEFVFAPQAPVGVPVRGGSASFPVRRVYCVGRNYAAHAREMGSDPD
REPPFFFCKPSDAVSYVADKTEGAFPYPPGTGNCHYEVELVVAIGKGGRDIPVEQAASHVFGYAIGLDMTRRDLQNESKK
TGRPWETGKAFDKSAPIGPIVPVSAIGHPAKGAVTLAVNGVEKQRGDLSDLIWSVPEMVSYLSKLFELQPGDLIYSGTPE
GVGPVVKGDVMQCHIEGVGDLTVKVV
>Mature_266_residues
MYPLPLPRPTRLGTTGHDTGCGVPSKKRKLESWMTEFVFAPQAPVGVPVRGGSASFPVRRVYCVGRNYAAHAREMGSDPD
REPPFFFCKPSDAVSYVADKTEGAFPYPPGTGNCHYEVELVVAIGKGGRDIPVEQAASHVFGYAIGLDMTRRDLQNESKK
TGRPWETGKAFDKSAPIGPIVPVSAIGHPAKGAVTLAVNGVEKQRGDLSDLIWSVPEMVSYLSKLFELQPGDLIYSGTPE
GVGPVVKGDVMQCHIEGVGDLTVKVV

Specific function: Unknown

COG id: COG0179

COG function: function code Q; 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FAH family [H]

Homologues:

Organism=Homo sapiens, GI13654274, Length=208, Percent_Identity=44.2307692307692, Blast_Score=166, Evalue=3e-41,
Organism=Homo sapiens, GI66348062, Length=201, Percent_Identity=44.2786069651741, Blast_Score=161, Evalue=5e-40,
Organism=Homo sapiens, GI215422413, Length=201, Percent_Identity=44.2786069651741, Blast_Score=161, Evalue=6e-40,
Organism=Homo sapiens, GI156231349, Length=256, Percent_Identity=32.8125, Blast_Score=125, Evalue=3e-29,
Organism=Homo sapiens, GI40786394, Length=256, Percent_Identity=32.03125, Blast_Score=122, Evalue=3e-28,
Organism=Escherichia coli, GI1787428, Length=218, Percent_Identity=38.5321100917431, Blast_Score=161, Evalue=4e-41,
Organism=Caenorhabditis elegans, GI17557057, Length=194, Percent_Identity=38.659793814433, Blast_Score=142, Evalue=2e-34,
Organism=Saccharomyces cerevisiae, GI6324161, Length=235, Percent_Identity=29.3617021276596, Blast_Score=118, Evalue=9e-28,
Organism=Drosophila melanogaster, GI28572127, Length=215, Percent_Identity=35.3488372093023, Blast_Score=122, Evalue=3e-28,
Organism=Drosophila melanogaster, GI28571789, Length=210, Percent_Identity=35.7142857142857, Blast_Score=122, Evalue=3e-28,
Organism=Drosophila melanogaster, GI24663695, Length=214, Percent_Identity=26.6355140186916, Blast_Score=78, Evalue=6e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002529
- InterPro:   IPR011234 [H]

Pfam domain/function: PF01557 FAA_hydrolase [H]

EC number: NA

Molecular weight: Translated: 28567; Mature: 28567

Theoretical pI: Translated: 7.50; Mature: 7.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYPLPLPRPTRLGTTGHDTGCGVPSKKRKLESWMTEFVFAPQAPVGVPVRGGSASFPVRR
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCEEE
VYCVGRNYAAHAREMGSDPDREPPFFFCKPSDAVSYVADKTEGAFPYPPGTGNCHYEVEL
EEEECCCHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHCCCCCCCCCCCCCCEEEEEEE
VVAIGKGGRDIPVEQAASHVFGYAIGLDMTRRDLQNESKKTGRPWETGKAFDKSAPIGPI
EEEECCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
VPVSAIGHPAKGAVTLAVNGVEKQRGDLSDLIWSVPEMVSYLSKLFELQPGDLIYSGTPE
CCHHHCCCCCCCEEEEEEECCHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCC
GVGPVVKGDVMQCHIEGVGDLTVKVV
CCCCCEECCEEEEEECCCCCEEEEEC
>Mature Secondary Structure
MYPLPLPRPTRLGTTGHDTGCGVPSKKRKLESWMTEFVFAPQAPVGVPVRGGSASFPVRR
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCEEE
VYCVGRNYAAHAREMGSDPDREPPFFFCKPSDAVSYVADKTEGAFPYPPGTGNCHYEVEL
EEEECCCHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHCCCCCCCCCCCCCCEEEEEEE
VVAIGKGGRDIPVEQAASHVFGYAIGLDMTRRDLQNESKKTGRPWETGKAFDKSAPIGPI
EEEECCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
VPVSAIGHPAKGAVTLAVNGVEKQRGDLSDLIWSVPEMVSYLSKLFELQPGDLIYSGTPE
CCHHHCCCCCCCEEEEEEECCHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCC
GVGPVVKGDVMQCHIEGVGDLTVKVV
CCCCCEECCEEEEEECCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12622808 [H]