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The map label for this gene is sco2

Identifier: 94309216

GI number: 94309216

Start: 287277

End: 287891

Strand: Direct

Name: sco2

Synonym: Rmet_0271

Alternate gene names: NA

Gene position: 287277-287891 (Clockwise)

Preceding gene: 94309215

Following gene: 94309218

Centisome position: 7.31

GC content: 64.55

Gene sequence:

>615_bases
ATGTCGACCTCTTCCCAGGGCCTTTGGGCCGCATTCCGCCGCTTTTGGCTGCTCGCGCTCTGCACGGCCCTGCTGGCCGC
CTGCGGGCAGCCAAAGCCGTCCTTCCGCAACGTCGATATCTCGGGTGCCACCGAGTTCGGCAAGGACTTCGCGCTGCTGG
ATCCCACCGGCAAGACCCGCACGCTGGCCGATTTCAAGGGCAAGGTGGTGCTGATGTTCTTCGGCTACACCCATTGCCCG
GACGTGTGCCCGACCACGATGGTGGAGCTCAAGCAGGTGATGGAGCAGATGGGGCCCGATGCGGACAAGGTGCAGGTGTT
GTTCGTCACCGTCGATCCGGATCGCGATACGGCGGCGCTGATGGCCCAGTATGTGCCGGCCTTCGACTCGCGCTTCCTGG
GCCTGCGCCCGGCCGACGAGGCCGCGCTCAAGAAGGTGACCAAGGACTTCAAGGTCTACTACGCCAAGGTGCCGGGTTCG
TCGCCGGACAACTACACGATGGACCACTCGGCCGGCAGCTACGTGTTCGACCAGAACGGCCAGTTGCGGCTGTTCATCCG
CCACGGCCAGGGGCCGGAGCCGATCGCGCATGACCTCAAGCAGTTGATGTCGTAA

Upstream 100 bases:

>100_bases
CGTGCCGCAGGTCTGACCGCCTGCGGCATCTTGCCGCGCCCGGAAGTCATCGGCGGCCCGATCGGCGATACTTTCGGGCA
ACTCCTCCCAATTCTTGCGC

Downstream 100 bases:

>100_bases
ATAAGAAAAGGCCGGTCTAATGACCGGCCTTTCTCATTGCGGGGTGCGTGGCCTCAGGCGAATGCCGCCAGCGCGCCCTT
CATCTTCTTCATTGCCGCCG

Product: cytochrome oxidase assembly protein, Sco1/SenC family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 204; Mature: 203

Protein sequence:

>204_residues
MSTSSQGLWAAFRRFWLLALCTALLAACGQPKPSFRNVDISGATEFGKDFALLDPTGKTRTLADFKGKVVLMFFGYTHCP
DVCPTTMVELKQVMEQMGPDADKVQVLFVTVDPDRDTAALMAQYVPAFDSRFLGLRPADEAALKKVTKDFKVYYAKVPGS
SPDNYTMDHSAGSYVFDQNGQLRLFIRHGQGPEPIAHDLKQLMS

Sequences:

>Translated_204_residues
MSTSSQGLWAAFRRFWLLALCTALLAACGQPKPSFRNVDISGATEFGKDFALLDPTGKTRTLADFKGKVVLMFFGYTHCP
DVCPTTMVELKQVMEQMGPDADKVQVLFVTVDPDRDTAALMAQYVPAFDSRFLGLRPADEAALKKVTKDFKVYYAKVPGS
SPDNYTMDHSAGSYVFDQNGQLRLFIRHGQGPEPIAHDLKQLMS
>Mature_203_residues
STSSQGLWAAFRRFWLLALCTALLAACGQPKPSFRNVDISGATEFGKDFALLDPTGKTRTLADFKGKVVLMFFGYTHCPD
VCPTTMVELKQVMEQMGPDADKVQVLFVTVDPDRDTAALMAQYVPAFDSRFLGLRPADEAALKKVTKDFKVYYAKVPGSS
PDNYTMDHSAGSYVFDQNGQLRLFIRHGQGPEPIAHDLKQLMS

Specific function: Unknown

COG id: COG1999

COG function: function code R; Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the SCO1/2 family [H]

Homologues:

Organism=Homo sapiens, GI281182727, Length=158, Percent_Identity=37.3417721518987, Blast_Score=117, Evalue=6e-27,
Organism=Homo sapiens, GI281182722, Length=158, Percent_Identity=37.3417721518987, Blast_Score=117, Evalue=6e-27,
Organism=Homo sapiens, GI281182716, Length=158, Percent_Identity=37.3417721518987, Blast_Score=117, Evalue=6e-27,
Organism=Homo sapiens, GI153791313, Length=158, Percent_Identity=37.3417721518987, Blast_Score=117, Evalue=6e-27,
Organism=Homo sapiens, GI4759068, Length=146, Percent_Identity=32.8767123287671, Blast_Score=97, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI17531419, Length=161, Percent_Identity=30.4347826086957, Blast_Score=101, Evalue=2e-22,
Organism=Saccharomyces cerevisiae, GI6319498, Length=143, Percent_Identity=34.2657342657343, Blast_Score=91, Evalue=1e-19,
Organism=Saccharomyces cerevisiae, GI6319511, Length=144, Percent_Identity=32.6388888888889, Blast_Score=80, Evalue=2e-16,
Organism=Drosophila melanogaster, GI19920710, Length=143, Percent_Identity=35.6643356643357, Blast_Score=109, Evalue=1e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003782
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF02630 SCO1-SenC [H]

EC number: NA

Molecular weight: Translated: 22583; Mature: 22452

Theoretical pI: Translated: 7.45; Mature: 7.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTSSQGLWAAFRRFWLLALCTALLAACGQPKPSFRNVDISGATEFGKDFALLDPTGKTR
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHCCCCEEEECCCCCCE
TLADFKGKVVLMFFGYTHCPDVCPTTMVELKQVMEQMGPDADKVQVLFVTVDPDRDTAAL
EHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCHHHH
MAQYVPAFDSRFLGLRPADEAALKKVTKDFKVYYAKVPGSSPDNYTMDHSAGSYVFDQNG
HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHEEEEEECCCCCCCCEEECCCCCCEEECCCC
QLRLFIRHGQGPEPIAHDLKQLMS
CEEEEEECCCCCCHHHHHHHHHHC
>Mature Secondary Structure 
STSSQGLWAAFRRFWLLALCTALLAACGQPKPSFRNVDISGATEFGKDFALLDPTGKTR
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHCCCCEEEECCCCCCE
TLADFKGKVVLMFFGYTHCPDVCPTTMVELKQVMEQMGPDADKVQVLFVTVDPDRDTAAL
EHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCHHHH
MAQYVPAFDSRFLGLRPADEAALKKVTKDFKVYYAKVPGSSPDNYTMDHSAGSYVFDQNG
HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHEEEEEECCCCCCCCEEECCCCCCEEECCCC
QLRLFIRHGQGPEPIAHDLKQLMS
CEEEEEECCCCCCHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA