Click here to switch to the map view.

The map label for this gene is yibK [H]

Identifier: 94309202

GI number: 94309202

Start: 275265

End: 275735

Strand: Reverse

Name: yibK [H]

Synonym: Rmet_0257

Alternate gene names: 94309202

Gene position: 275735-275265 (Counterclockwise)

Preceding gene: 94309203

Following gene: 335055482

Centisome position: 7.02

GC content: 65.82

Gene sequence:

>471_bases
ATGTTCAACGTCGTTCTTGTCGAACCCGAAATCCCGCCGAACACCGGCAATGTGATCCGCCTGTGCGCCAACACCGGCGC
GCAGCTCCATTTGGTCAAGCCGTTGGGATTTCCACTCGAAGACGCCCGGATGCGCCGCGCGGGGCTCGACTATCACGAGT
ACGCGACGATGCGCGTGCATGAAAGCTGGGATGCGTTGATGGCTGCCGAGCAGCCGGACCCCACGCGCATGTTCGCGCTG
ACCACGCACGGCTCCACGCCGTTCGGCCAGGTCAGCTTCGCGCCGGGCGACTGGTTCGTATTCGGTTCGGAGACCCGCGG
GCTCGCACCGGAGCGCCGCGAGTGGTTCCCGTCCGCGCAGCGCATCCGCCTGCCGATGCGCCCCAACAACCGCAGCCTCA
ATCTGTCGAACACGGTGGCCGTGGTCGTCTTCGAGGCATGGCGTCAGAACGGCTTCGCGGGCGGAAGTTGA

Upstream 100 bases:

>100_bases
CATGGCGCCGCGCGGGTGACGGCGCTGCCGGCACTGCGCACGCCGTGACACCGGCTGCGACTAGCGGTAAGCTGCGCTCC
GGTTTTTCGCCTATCCCATC

Downstream 100 bases:

>100_bases
ATCGACAGCGCGGTCAGCCCTCGGGCTGCACGCCGGCCGCGCGAATCACCTTGTCCCAGCGTGCCTTCTCGCTGACCATC
GTTTCGCGCAACGATGCCGG

Product: putative rRNA methylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 156; Mature: 156

Protein sequence:

>156_residues
MFNVVLVEPEIPPNTGNVIRLCANTGAQLHLVKPLGFPLEDARMRRAGLDYHEYATMRVHESWDALMAAEQPDPTRMFAL
TTHGSTPFGQVSFAPGDWFVFGSETRGLAPERREWFPSAQRIRLPMRPNNRSLNLSNTVAVVVFEAWRQNGFAGGS

Sequences:

>Translated_156_residues
MFNVVLVEPEIPPNTGNVIRLCANTGAQLHLVKPLGFPLEDARMRRAGLDYHEYATMRVHESWDALMAAEQPDPTRMFAL
TTHGSTPFGQVSFAPGDWFVFGSETRGLAPERREWFPSAQRIRLPMRPNNRSLNLSNTVAVVVFEAWRQNGFAGGS
>Mature_156_residues
MFNVVLVEPEIPPNTGNVIRLCANTGAQLHLVKPLGFPLEDARMRRAGLDYHEYATMRVHESWDALMAAEQPDPTRMFAL
TTHGSTPFGQVSFAPGDWFVFGSETRGLAPERREWFPSAQRIRLPMRPNNRSLNLSNTVAVVVFEAWRQNGFAGGS

Specific function: Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide [H]

COG id: COG0219

COG function: function code J; Predicted rRNA methylase (SpoU class)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family. TrmL subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790034, Length=155, Percent_Identity=54.8387096774194, Blast_Score=185, Evalue=9e-49,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004440
- InterPro:   IPR016914
- InterPro:   IPR001537 [H]

Pfam domain/function: PF00588 SpoU_methylase [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 17469; Mature: 17469

Theoretical pI: Translated: 7.69; Mature: 7.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFNVVLVEPEIPPNTGNVIRLCANTGAQLHLVKPLGFPLEDARMRRAGLDYHEYATMRVH
CEEEEEECCCCCCCCCCEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCHHHEEEEEEE
ESWDALMAAEQPDPTRMFALTTHGSTPFGQVSFAPGDWFVFGSETRGLAPERREWFPSAQ
CCCCEEEECCCCCCCEEEEEEECCCCCCCEEEECCCCEEEECCCCCCCCCCHHHHCCCCC
RIRLPMRPNNRSLNLSNTVAVVVFEAWRQNGFAGGS
EEEECCCCCCCEEECCCEEEEEEEEHHHCCCCCCCC
>Mature Secondary Structure
MFNVVLVEPEIPPNTGNVIRLCANTGAQLHLVKPLGFPLEDARMRRAGLDYHEYATMRVH
CEEEEEECCCCCCCCCCEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCHHHEEEEEEE
ESWDALMAAEQPDPTRMFALTTHGSTPFGQVSFAPGDWFVFGSETRGLAPERREWFPSAQ
CCCCEEEECCCCCCCEEEEEEECCCCCCCEEEECCCCEEEECCCCCCCCCCHHHHCCCCC
RIRLPMRPNNRSLNLSNTVAVVVFEAWRQNGFAGGS
EEEECCCCCCCEEECCCEEEEEEEEHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA