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The map label for this gene is ykfC [H]

Identifier: 94309198

GI number: 94309198

Start: 270722

End: 272437

Strand: Direct

Name: ykfC [H]

Synonym: Rmet_0253

Alternate gene names: 94309198

Gene position: 270722-272437 (Clockwise)

Preceding gene: 94309197

Following gene: 94309199

Centisome position: 6.89

GC content: 55.83

Gene sequence:

>1716_bases
ATGGAAGCATTGATCCGCGAGGATGAATCTGCGCCCTCCGGCATTCCGCAGCGATGGGGCGACATCAATTGGCGCCGCGT
CGAACAGAATGTTCGAGCAATGCAGATTCGAATTGCGAAGGCGACACAGGAACGGGACTGGCGCAGGGTGAAAGCTCTGC
AGCGGTCTCTGACCCGCTCGTTTTCCGCCAAGGCATCGGCGGTGCGACGAGTGACGGAGAACCAAGGTAAACGGACGGCA
GGTGTCGACCGCGAACTCTGGGACTCGCCTGAAGTTCGATGGGTAGCCATTGGACGGTTGAGACGCCGGGGGTATCGGCC
CATGCCATTACGGAGGGTCTTCATCCCCAAAGCCAACGGAAAGGAACGCCCTCTGGGTATCCCGACCATGTTGGACCGGG
CCATGCAGGCGCTATATCTGCTGGCGCTGGAACCGGTGTCCGAGGGGACGAGCGATCCGAACTCTTATGGGTTCAGGTCC
AATCGTTCTACTGCGGATGCTATGTCCCAGCTATTCGTCAACTTATCCAGAAAGGTCTCGGCCTCATGGATATTGGAGGC
GGACATCCGCGGGTGTTTTGACCATATCAGTCACGACTGGCTGGAGCGCAATGTCCCTATGGACAAAGCGATCCTTCGGA
AGTGGTTGAAAGCTGGCGTGGTATTTCAGGGCCAGTTTCAGGCGACCGAAGCCGGTACGCCACAGGGGGGCATCATCTCC
CCGACCTTAGCCAATGTGGCGCTGAACGGACTGGAACAACAGCTAGCTCGGTTTCTCGAAACCACGCTGGGTGTCAACCA
GACCCGGAAGCTCAAAGTAAATGTTGTGCGCTATGCGGACGATTTCGTGATCACCGGCAGCACGCCGGAAGTTTTGGAAC
ACGAGGTGAAGCCGTGGGTGGAACAGTTCCTCGCAATTCGAGGGTTGTCCCTGTCCACGGAGAAAACGCGGATCGTGAGC
ATTGACGAGGGTTTTGACTTCCTTGGGTGGAATTTCCGGAAGTATTCCGGAACGCTGCTCATTAAGCCAAGCAGGAAAAA
CGCGCAGGCGTTCTATCGCAAGGTTAAGGAGGTTATCAGTGCTAACAAGACGGTAAAGCAGGAGGTCATCATTCGCCTGC
TGAACCCGATGCTGAGAGGCTGGGCGCAGTATCACAGCCCGGTAGTGGCAAAAGAAGCGTTCAGCAAGATGCAGAGCCGA
GTTTTCCGGGCGCTGCTTTGGTGGACAAAACGGCGACACAGAGGGAAGAACGCCGAATGGGTGCGGAAGAAATACTTCGC
TTCGTTTGGTGATCGAAACTGGGTGTTCGGGACTGAGTTTGTGGAAGACGATGGGGAACGGCGCTGGCAGGAGTTGTATT
CGCTTGCTAGCACGCCCATCAGACGGCACAAGAAGATTCGGGGGGACTTCAATCCTTTCGATCCAGCGCAAGAGATGTAT
GGCGAAAATCTACGCCGGGACCGCATGCTGGAAAGCATGTCTCACCGGAAACAGTGGATCAGGCTATATGTCGATCAGCG
GGGCTTATGCGCGGTGTGTCAGTGCAAGATAACCAAAGAGACCGGGTGGGATGACCATCACATCGTCTACAGAACCCACG
GAGGTTCAGACGCTCTAGGAAATCGCGTATTGCTGCATCCCAACTGCCACGTCCAAGTACACCATCATGGTCGAACCGTT
GTGAAACCGGTGCTGGAGATGTCCAGCATTTTGTAA

Upstream 100 bases:

>100_bases
GAACTCGCTTGTTTAATTTTCTTCCCTTGGGGGGTGACATACCCCGCAAGGGGCATGTTGTCTCTGCTAGTTGGGGAAGT
CCTCAAGATAGGAGAGCAGC

Downstream 100 bases:

>100_bases
GGGCTTGAGCCGTATGCGGGGAAACTCGCACGTACGGTTCTTAGGGGGGAGCAAACCAGCAATGGTATGCTCCTACCCTC
CCAACTGGCCGCCGGTGATC

Product: RNA-directed DNA polymerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 571; Mature: 571

Protein sequence:

>571_residues
MEALIREDESAPSGIPQRWGDINWRRVEQNVRAMQIRIAKATQERDWRRVKALQRSLTRSFSAKASAVRRVTENQGKRTA
GVDRELWDSPEVRWVAIGRLRRRGYRPMPLRRVFIPKANGKERPLGIPTMLDRAMQALYLLALEPVSEGTSDPNSYGFRS
NRSTADAMSQLFVNLSRKVSASWILEADIRGCFDHISHDWLERNVPMDKAILRKWLKAGVVFQGQFQATEAGTPQGGIIS
PTLANVALNGLEQQLARFLETTLGVNQTRKLKVNVVRYADDFVITGSTPEVLEHEVKPWVEQFLAIRGLSLSTEKTRIVS
IDEGFDFLGWNFRKYSGTLLIKPSRKNAQAFYRKVKEVISANKTVKQEVIIRLLNPMLRGWAQYHSPVVAKEAFSKMQSR
VFRALLWWTKRRHRGKNAEWVRKKYFASFGDRNWVFGTEFVEDDGERRWQELYSLASTPIRRHKKIRGDFNPFDPAQEMY
GENLRRDRMLESMSHRKQWIRLYVDQRGLCAVCQCKITKETGWDDHHIVYRTHGGSDALGNRVLLHPNCHVQVHHHGRTV
VKPVLEMSSIL

Sequences:

>Translated_571_residues
MEALIREDESAPSGIPQRWGDINWRRVEQNVRAMQIRIAKATQERDWRRVKALQRSLTRSFSAKASAVRRVTENQGKRTA
GVDRELWDSPEVRWVAIGRLRRRGYRPMPLRRVFIPKANGKERPLGIPTMLDRAMQALYLLALEPVSEGTSDPNSYGFRS
NRSTADAMSQLFVNLSRKVSASWILEADIRGCFDHISHDWLERNVPMDKAILRKWLKAGVVFQGQFQATEAGTPQGGIIS
PTLANVALNGLEQQLARFLETTLGVNQTRKLKVNVVRYADDFVITGSTPEVLEHEVKPWVEQFLAIRGLSLSTEKTRIVS
IDEGFDFLGWNFRKYSGTLLIKPSRKNAQAFYRKVKEVISANKTVKQEVIIRLLNPMLRGWAQYHSPVVAKEAFSKMQSR
VFRALLWWTKRRHRGKNAEWVRKKYFASFGDRNWVFGTEFVEDDGERRWQELYSLASTPIRRHKKIRGDFNPFDPAQEMY
GENLRRDRMLESMSHRKQWIRLYVDQRGLCAVCQCKITKETGWDDHHIVYRTHGGSDALGNRVLLHPNCHVQVHHHGRTV
VKPVLEMSSIL
>Mature_571_residues
MEALIREDESAPSGIPQRWGDINWRRVEQNVRAMQIRIAKATQERDWRRVKALQRSLTRSFSAKASAVRRVTENQGKRTA
GVDRELWDSPEVRWVAIGRLRRRGYRPMPLRRVFIPKANGKERPLGIPTMLDRAMQALYLLALEPVSEGTSDPNSYGFRS
NRSTADAMSQLFVNLSRKVSASWILEADIRGCFDHISHDWLERNVPMDKAILRKWLKAGVVFQGQFQATEAGTPQGGIIS
PTLANVALNGLEQQLARFLETTLGVNQTRKLKVNVVRYADDFVITGSTPEVLEHEVKPWVEQFLAIRGLSLSTEKTRIVS
IDEGFDFLGWNFRKYSGTLLIKPSRKNAQAFYRKVKEVISANKTVKQEVIIRLLNPMLRGWAQYHSPVVAKEAFSKMQSR
VFRALLWWTKRRHRGKNAEWVRKKYFASFGDRNWVFGTEFVEDDGERRWQELYSLASTPIRRHKKIRGDFNPFDPAQEMY
GENLRRDRMLESMSHRKQWIRLYVDQRGLCAVCQCKITKETGWDDHHIVYRTHGGSDALGNRVLLHPNCHVQVHHHGRTV
VKPVLEMSSIL

Specific function: Unknown

COG id: COG3344

COG function: function code L; Retron-type reverse transcriptase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 reverse transcriptase domain [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6226520, Length=331, Percent_Identity=25.9818731117825, Blast_Score=94, Evalue=8e-20,
Organism=Saccharomyces cerevisiae, GI6226521, Length=325, Percent_Identity=24.3076923076923, Blast_Score=88, Evalue=4e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015706
- InterPro:   IPR000477 [H]

Pfam domain/function: PF00078 RVT_1 [H]

EC number: NA

Molecular weight: Translated: 66039; Mature: 66039

Theoretical pI: Translated: 10.81; Mature: 10.81

Prosite motif: PS50878 RT_POL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEALIREDESAPSGIPQRWGDINWRRVEQNVRAMQIRIAKATQERDWRRVKALQRSLTRS
CCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FSAKASAVRRVTENQGKRTAGVDRELWDSPEVRWVAIGRLRRRGYRPMPLRRVFIPKANG
HHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCEEEEEHHHHHHCCCCCCCCEEEEEECCCC
KERPLGIPTMLDRAMQALYLLALEPVSEGTSDPNSYGFRSNRSTADAMSQLFVNLSRKVS
CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
ASWILEADIRGCFDHISHDWLERNVPMDKAILRKWLKAGVVFQGQFQATEAGTPQGGIIS
HHHEEEHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCEEECCEEECCCCCCCCCCCC
PTLANVALNGLEQQLARFLETTLGVNQTRKLKVNVVRYADDFVITGSTPEVLEHEVKPWV
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCEEEECCCHHHHHHHHHHHH
EQFLAIRGLSLSTEKTRIVSIDEGFDFLGWNFRKYSGTLLIKPSRKNAQAFYRKVKEVIS
HHHHHHHCCCCCCCCEEEEEECCCCCHHCCCEEEECCEEEEECCCCCHHHHHHHHHHHHH
ANKTVKQEVIIRLLNPMLRGWAQYHSPVVAKEAFSKMQSRVFRALLWWTKRRHRGKNAEW
CCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
VRKKYFASFGDRNWVFGTEFVEDDGERRWQELYSLASTPIRRHKKIRGDFNPFDPAQEMY
HHHHHHHHCCCCCCEECCHHHHCCHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCHHHHHH
GENLRRDRMLESMSHRKQWIRLYVDQRGLCAVCQCKITKETGWDDHHIVYRTHGGSDALG
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCEEEEEECCCCHHHC
NRVLLHPNCHVQVHHHGRTVVKPVLEMSSIL
CEEEECCCCEEEEEECCCHHHHHHHHHHHCC
>Mature Secondary Structure
MEALIREDESAPSGIPQRWGDINWRRVEQNVRAMQIRIAKATQERDWRRVKALQRSLTRS
CCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FSAKASAVRRVTENQGKRTAGVDRELWDSPEVRWVAIGRLRRRGYRPMPLRRVFIPKANG
HHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCEEEEEHHHHHHCCCCCCCCEEEEEECCCC
KERPLGIPTMLDRAMQALYLLALEPVSEGTSDPNSYGFRSNRSTADAMSQLFVNLSRKVS
CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
ASWILEADIRGCFDHISHDWLERNVPMDKAILRKWLKAGVVFQGQFQATEAGTPQGGIIS
HHHEEEHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCEEECCEEECCCCCCCCCCCC
PTLANVALNGLEQQLARFLETTLGVNQTRKLKVNVVRYADDFVITGSTPEVLEHEVKPWV
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCEEEECCCHHHHHHHHHHHH
EQFLAIRGLSLSTEKTRIVSIDEGFDFLGWNFRKYSGTLLIKPSRKNAQAFYRKVKEVIS
HHHHHHHCCCCCCCCEEEEEECCCCCHHCCCEEEECCEEEEECCCCCHHHHHHHHHHHHH
ANKTVKQEVIIRLLNPMLRGWAQYHSPVVAKEAFSKMQSRVFRALLWWTKRRHRGKNAEW
CCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
VRKKYFASFGDRNWVFGTEFVEDDGERRWQELYSLASTPIRRHKKIRGDFNPFDPAQEMY
HHHHHHHHCCCCCCEECCHHHHCCHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCHHHHHH
GENLRRDRMLESMSHRKQWIRLYVDQRGLCAVCQCKITKETGWDDHHIVYRTHGGSDALG
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCEEEEEECCCCHHHC
NRVLLHPNCHVQVHHHGRTVVKPVLEMSSIL
CEEEECCCCEEEEEECCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]