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The map label for this gene is cirA [C]

Identifier: 94309068

GI number: 94309068

Start: 128153

End: 130312

Strand: Reverse

Name: cirA [C]

Synonym: Rmet_0123

Alternate gene names: 94309068

Gene position: 130312-128153 (Counterclockwise)

Preceding gene: 94309069

Following gene: 94309046

Centisome position: 3.32

GC content: 66.3

Gene sequence:

>2160_bases
ATGTTCTCGAACAACACCCGTATTCCGGCGGTGCGTCGCACCCCGCTGGCGGCGCTTGCCGCCCTGATCGTCACTTCCGG
CGTTGCCTCGCACGCGATGGCCCAGGACAACGCTGCTGCAGCGCCGGCCGCGCCGCAAACGCAACCGCAACCGCAACCGC
AAACGCTGAAGGAAGTGGTGGTCACGGCCAATCCGCTCGGCAGCGACCTGAACGAGATGGTCGCGCCCGTCTCCACGCTC
GGTGGCGACGCGCTGACCGTGCGCCAGACCAGCACGCTTGGCGAGACGCTGAACGGCATGCCCGGTGTCACCTCCACCTA
CTTCGGTCCGAACGCGAGCCGTCCTTCCATCCGCGGCCTCGATGGCGACCGCATCAAGTTGCTGCAGAGCGGCGGCTCCA
CGCTCGACGCATCGTCGCTGTCCTATGACCACGCGGTGCCGATCGACCCGCTGGTTGCCGAGAAAGTGGAAGTGGTGCGC
GGCCCCGCGGCGCTGATGTACGGCGGCAATGCACTGGGCGGCGTGGTCAATGTGATCGACAATCGCATCCCGCGCGACCC
CGTCACCGGGGTATCCGGCGCGGCCGATGTCAGTGGCACGATCGGTGGCGACAAGGGGCGCAACGCCAGCGGCCTGCTGG
AAGCGGGCAATGGCACTTTCGCCGTGCACGCCGACGCCTTTGTCCGCCAGACCAGCGACCTGCGCATCCCCGGATTCGCG
CGCAGCGCCAACCTGCGTGCCACGCAGCCGCTGCCCGCAGGAGAGAGCGAGGCCTACGGCACGCTGCCGAACACGAGCTC
CCATCAGGAAGGCGGCTCGATGGGCGGCTCCTACACCTGGGCGGACGGGTTCCTCGGCGCCAACTACTCGACCTACCGCA
ACGATTACGGCACCCCGGCCGAGGCCGACGCCCGCATCAAGATGCGACAGGACCGCATCGGCCTGGCGGGCGAGGCGCGC
AATCTGGCCGGCAATACCAACGGCATCATCGAATCGGTGAAGGGCAGCTTCAACTACACCGACTACGAACACCGCGAAAT
CGAAGACGGCGTGACCGGCACGACGTTCAAGAACCGTGGCTGGGATACGCGCATCGAGGCCACGCACGGCAAGATCGGCA
ATATGAGCGGCGTGATCGGCACGCAGTTCGGCCATTCCGATTTCTCGGCGCTGGGAGAGGAAGCCTTCGTCCCGAGCACC
ACCACCGACAACGCCGCGCTCTTCGTCTTCGAGGAACTGCCGCTGATTTCGTCGGGCGATCTCAAGCTCAACCTTGGCGG
CCGCATCGACCACAGCAGCGTCAAGGCCAGCGCCAACGGCAACGATCGCTTCACCGACGACAACCGCAGCTTCAACGCGG
GCAGCGCGTCGGCCGGGCTGCTGTACAAGCTCAATCCGATCTGGACGGTCACGTCGAACCTGTCGTACACCGAGCGCGCG
CCAACGTTCTACGAGCTGTACGCCAACGGTCCGCACCTGGCCACCAACGCCTACGAAATCGGCGACCCGAATGCGAACAA
GGAACGCGCCACGTCGATCGACCTCGGCATGCGCTTCAAGCAAGGGGATCATAGCGGCAGCGTGTCGGGCTACTACAGCC
GCTTCCAGAACTACCTTGCCCTGCTGAACACGGGCACGTTCCGCGACGCCGAAGGCAATGTCGTGACGGCCGGCAGCGAC
GGCGCGCTACCTGTCCTGCAGTACGCGGGCGTGCCAGCCACGCTGTATGGCTTCGAGGCGGAAGGCAAGACGCGCCTGCT
GCAGAAGATGCTGACCACCGGCGACACCCTCGACTTCGAGGCCCGCGCCGACTACGTGCATGGCGAAAACCGCAACAACG
GCGAGCCACTGCCGCGACTGGCACCGCTGCGCCTGGGTGGATCGCTGGTCTATGCGGCCGGCCCGTGGGGCGCGCGCATC
AATGTGGACTGGAACGCGCGCCAGACCCGCGTGCCGACCGGCGACACGCCGACCGACGCATACACGATGCTGGGCGTATC
GCTGACATACAAGCTCAAGGTGTCGGGTACCCAGACGCTGCTCTACCTCCGCGGCGACAACCTGACCAATACGGAAGCCC
GCAGCGCCACGTCGATCCTGCGCGACATCGCGCCGCTGCCGGGTCGCAGCGTCAAGATCGGAATGCGGACGATGTTCTGA

Upstream 100 bases:

>100_bases
GGTATCTTGCCGCGCGCTCGCGCCTGCCTCACGGCGCGGTGCCGGGCATCTCGCCCGCGCAGCACCGCGCACGCATGAAC
GAAAACGAAAATCGCGAGCC

Downstream 100 bases:

>100_bases
CGATCTGGAAACGCCCCTCTCCCTCTCACGGGGGAGGGGCGCGCATAACGACGGCTATCGGCTGAAATCAAATGACTCGG
GCACGAGCGAATACACGGCG

Product: outer membrane receptor, TonB dependent

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 719; Mature: 719

Protein sequence:

>719_residues
MFSNNTRIPAVRRTPLAALAALIVTSGVASHAMAQDNAAAAPAAPQTQPQPQPQTLKEVVVTANPLGSDLNEMVAPVSTL
GGDALTVRQTSTLGETLNGMPGVTSTYFGPNASRPSIRGLDGDRIKLLQSGGSTLDASSLSYDHAVPIDPLVAEKVEVVR
GPAALMYGGNALGGVVNVIDNRIPRDPVTGVSGAADVSGTIGGDKGRNASGLLEAGNGTFAVHADAFVRQTSDLRIPGFA
RSANLRATQPLPAGESEAYGTLPNTSSHQEGGSMGGSYTWADGFLGANYSTYRNDYGTPAEADARIKMRQDRIGLAGEAR
NLAGNTNGIIESVKGSFNYTDYEHREIEDGVTGTTFKNRGWDTRIEATHGKIGNMSGVIGTQFGHSDFSALGEEAFVPST
TTDNAALFVFEELPLISSGDLKLNLGGRIDHSSVKASANGNDRFTDDNRSFNAGSASAGLLYKLNPIWTVTSNLSYTERA
PTFYELYANGPHLATNAYEIGDPNANKERATSIDLGMRFKQGDHSGSVSGYYSRFQNYLALLNTGTFRDAEGNVVTAGSD
GALPVLQYAGVPATLYGFEAEGKTRLLQKMLTTGDTLDFEARADYVHGENRNNGEPLPRLAPLRLGGSLVYAAGPWGARI
NVDWNARQTRVPTGDTPTDAYTMLGVSLTYKLKVSGTQTLLYLRGDNLTNTEARSATSILRDIAPLPGRSVKIGMRTMF

Sequences:

>Translated_719_residues
MFSNNTRIPAVRRTPLAALAALIVTSGVASHAMAQDNAAAAPAAPQTQPQPQPQTLKEVVVTANPLGSDLNEMVAPVSTL
GGDALTVRQTSTLGETLNGMPGVTSTYFGPNASRPSIRGLDGDRIKLLQSGGSTLDASSLSYDHAVPIDPLVAEKVEVVR
GPAALMYGGNALGGVVNVIDNRIPRDPVTGVSGAADVSGTIGGDKGRNASGLLEAGNGTFAVHADAFVRQTSDLRIPGFA
RSANLRATQPLPAGESEAYGTLPNTSSHQEGGSMGGSYTWADGFLGANYSTYRNDYGTPAEADARIKMRQDRIGLAGEAR
NLAGNTNGIIESVKGSFNYTDYEHREIEDGVTGTTFKNRGWDTRIEATHGKIGNMSGVIGTQFGHSDFSALGEEAFVPST
TTDNAALFVFEELPLISSGDLKLNLGGRIDHSSVKASANGNDRFTDDNRSFNAGSASAGLLYKLNPIWTVTSNLSYTERA
PTFYELYANGPHLATNAYEIGDPNANKERATSIDLGMRFKQGDHSGSVSGYYSRFQNYLALLNTGTFRDAEGNVVTAGSD
GALPVLQYAGVPATLYGFEAEGKTRLLQKMLTTGDTLDFEARADYVHGENRNNGEPLPRLAPLRLGGSLVYAAGPWGARI
NVDWNARQTRVPTGDTPTDAYTMLGVSLTYKLKVSGTQTLLYLRGDNLTNTEARSATSILRDIAPLPGRSVKIGMRTMF
>Mature_719_residues
MFSNNTRIPAVRRTPLAALAALIVTSGVASHAMAQDNAAAAPAAPQTQPQPQPQTLKEVVVTANPLGSDLNEMVAPVSTL
GGDALTVRQTSTLGETLNGMPGVTSTYFGPNASRPSIRGLDGDRIKLLQSGGSTLDASSLSYDHAVPIDPLVAEKVEVVR
GPAALMYGGNALGGVVNVIDNRIPRDPVTGVSGAADVSGTIGGDKGRNASGLLEAGNGTFAVHADAFVRQTSDLRIPGFA
RSANLRATQPLPAGESEAYGTLPNTSSHQEGGSMGGSYTWADGFLGANYSTYRNDYGTPAEADARIKMRQDRIGLAGEAR
NLAGNTNGIIESVKGSFNYTDYEHREIEDGVTGTTFKNRGWDTRIEATHGKIGNMSGVIGTQFGHSDFSALGEEAFVPST
TTDNAALFVFEELPLISSGDLKLNLGGRIDHSSVKASANGNDRFTDDNRSFNAGSASAGLLYKLNPIWTVTSNLSYTERA
PTFYELYANGPHLATNAYEIGDPNANKERATSIDLGMRFKQGDHSGSVSGYYSRFQNYLALLNTGTFRDAEGNVVTAGSD
GALPVLQYAGVPATLYGFEAEGKTRLLQKMLTTGDTLDFEARADYVHGENRNNGEPLPRLAPLRLGGSLVYAAGPWGARI
NVDWNARQTRVPTGDTPTDAYTMLGVSLTYKLKVSGTQTLLYLRGDNLTNTEARSATSILRDIAPLPGRSVKIGMRTMF

Specific function: Probable receptor, tonB-dependent [H]

COG id: COG1629

COG function: function code P; Outer membrane receptor proteins, mostly Fe transport

Gene ontology:

Cell location: Cell outer membrane (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tonB-dependent receptor family [H]

Homologues:

Organism=Escherichia coli, GI1788478, Length=155, Percent_Identity=32.9032258064516, Blast_Score=73, Evalue=6e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012910
- InterPro:   IPR000531 [H]

Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]

EC number: NA

Molecular weight: Translated: 76094; Mature: 76094

Theoretical pI: Translated: 5.85; Mature: 5.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFSNNTRIPAVRRTPLAALAALIVTSGVASHAMAQDNAAAAPAAPQTQPQPQPQTLKEVV
CCCCCCCCCCCCCCHHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHH
VTANPLGSDLNEMVAPVSTLGGDALTVRQTSTLGETLNGMPGVTSTYFGPNASRPSIRGL
EECCCCCCCHHHHHHHHHHCCCCEEEEEECHHHHHHHCCCCCCCEECCCCCCCCCCCCCC
DGDRIKLLQSGGSTLDASSLSYDHAVPIDPLVAEKVEVVRGPAALMYGGNALGGVVNVID
CCCEEEEEECCCCEEECCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCHHHHHHHHHH
NRIPRDPVTGVSGAADVSGTIGGDKGRNASGLLEAGNGTFAVHADAFVRQTSDLRIPGFA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCEEEEECHHHHHCCCCCCCCCCC
RSANLRATQPLPAGESEAYGTLPNTSSHQEGGSMGGSYTWADGFLGANYSTYRNDYGTPA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCHHHCCCCCCCC
EADARIKMRQDRIGLAGEARNLAGNTNGIIESVKGSFNYTDYEHREIEDGVTGTTFKNRG
CCCCEEEEECCCCCCCCCCHHCCCCCCHHHHHHCCCCCCCCCCCHHHHCCCCCCEECCCC
WDTRIEATHGKIGNMSGVIGTQFGHSDFSALGEEAFVPSTTTDNAALFVFEELPLISSGD
CCEEEEECCCCCCCCCCEEECCCCCHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCCC
LKLNLGGRIDHSSVKASANGNDRFTDDNRSFNAGSASAGLLYKLNPIWTVTSNLSYTERA
EEEEECCEECCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEEEECCEEEEECCCCCCCCC
PTFYELYANGPHLATNAYEIGDPNANKERATSIDLGMRFKQGDHSGSVSGYYSRFQNYLA
CEEEEEECCCCEEECCCEECCCCCCCCHHCEEEEECEEEECCCCCCCCHHHHHHHHHHHH
LLNTGTFRDAEGNVVTAGSDGALPVLQYAGVPATLYGFEAEGKTRLLQKMLTTGDTLDFE
HHCCCCEECCCCCEEEECCCCCCHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCC
ARADYVHGENRNNGEPLPRLAPLRLGGSLVYAAGPWGARINVDWNARQTRVPTGDTPTDA
CCCCEECCCCCCCCCCCCCCCCEEECCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCC
YTMLGVSLTYKLKVSGTQTLLYLRGDNLTNTEARSATSILRDIAPLPGRSVKIGMRTMF
EEEEEEEEEEEEEECCCEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEECC
>Mature Secondary Structure
MFSNNTRIPAVRRTPLAALAALIVTSGVASHAMAQDNAAAAPAAPQTQPQPQPQTLKEVV
CCCCCCCCCCCCCCHHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHH
VTANPLGSDLNEMVAPVSTLGGDALTVRQTSTLGETLNGMPGVTSTYFGPNASRPSIRGL
EECCCCCCCHHHHHHHHHHCCCCEEEEEECHHHHHHHCCCCCCCEECCCCCCCCCCCCCC
DGDRIKLLQSGGSTLDASSLSYDHAVPIDPLVAEKVEVVRGPAALMYGGNALGGVVNVID
CCCEEEEEECCCCEEECCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCHHHHHHHHHH
NRIPRDPVTGVSGAADVSGTIGGDKGRNASGLLEAGNGTFAVHADAFVRQTSDLRIPGFA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCEEEEECHHHHHCCCCCCCCCCC
RSANLRATQPLPAGESEAYGTLPNTSSHQEGGSMGGSYTWADGFLGANYSTYRNDYGTPA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCHHHCCCCCCCC
EADARIKMRQDRIGLAGEARNLAGNTNGIIESVKGSFNYTDYEHREIEDGVTGTTFKNRG
CCCCEEEEECCCCCCCCCCHHCCCCCCHHHHHHCCCCCCCCCCCHHHHCCCCCCEECCCC
WDTRIEATHGKIGNMSGVIGTQFGHSDFSALGEEAFVPSTTTDNAALFVFEELPLISSGD
CCEEEEECCCCCCCCCCEEECCCCCHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCCC
LKLNLGGRIDHSSVKASANGNDRFTDDNRSFNAGSASAGLLYKLNPIWTVTSNLSYTERA
EEEEECCEECCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEEEECCEEEEECCCCCCCCC
PTFYELYANGPHLATNAYEIGDPNANKERATSIDLGMRFKQGDHSGSVSGYYSRFQNYLA
CEEEEEECCCCEEECCCEECCCCCCCCHHCEEEEECEEEECCCCCCCCHHHHHHHHHHHH
LLNTGTFRDAEGNVVTAGSDGALPVLQYAGVPATLYGFEAEGKTRLLQKMLTTGDTLDFE
HHCCCCEECCCCCEEEECCCCCCHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCC
ARADYVHGENRNNGEPLPRLAPLRLGGSLVYAAGPWGARINVDWNARQTRVPTGDTPTDA
CCCCEECCCCCCCCCCCCCCCCEEECCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCC
YTMLGVSLTYKLKVSGTQTLLYLRGDNLTNTEARSATSILRDIAPLPGRSVKIGMRTMF
EEEEEEEEEEEEEECCCEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10710307 [H]