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The map label for this gene is ydfG [C]

Identifier: 94309044

GI number: 94309044

Start: 106009

End: 106806

Strand: Direct

Name: ydfG [C]

Synonym: Rmet_0099

Alternate gene names: 94309044

Gene position: 106009-106806 (Clockwise)

Preceding gene: 94309043

Following gene: 94309045

Centisome position: 2.7

GC content: 67.42

Gene sequence:

>798_bases
ATGCGACCACAGAAAATCTTTATCACCGGCGCCTCCAGCGGCATTGGCCAGGCGCTGGCACGCGCATACGCGGAGCAGGG
TGCCATCCTTGGCCTGGTCGGCCGGCGCGAGGATGCGCTAAGGGCTTTCGCGGGCACGCTCCCCAATCCCGGCGCTGTGC
GCGTCTATGCCGTGGACGTCCGCGACGTCGACGCCATGGGGGTCGCGGCTGCCGATTTCCTTGCGAACGTGGGCTGTCCC
GACGTCGTGATCGCCAACGCGGGCGTCTCGGTGGGTACGGTGGCCAGCGAGCGCGAGGATCTGGAGGTGTTCCGCACGGT
CATGGATACCAACTGGTTCGGCACGCTGACTACGTTTCAGCCATTCCTCGGGCCGATGCGCGAGCAGCCACCCGGTGCCG
ACGGATGGCGTGGCACGCTGGTCGGCATCGCCAGCGTGGCCGGGGTGCGGGGATTGCCCGGCGGCGGGGCCTACAGCGCA
TCGAAATCGGCGGTGATCAAGCTGCTGGAGAGCCTGCGGCTCGAACAGGCGCGCGAGAAGATTCGCGTGGTGACGATTGC
GCCGGGTTACATCCGCACGCCAATGACGTCGCACAACCCGTACCGGATGCCATTCCTGATGGATGCCGAGGTGTTTGCGC
AAAAAGCGGTGCGGCGAATTGCCGCAGGCAGCCGCTTCGCGGTGATCCCCTGGCAGATGGGTGTTGTGGCTTCGCTGCTG
CACCTGATGCCGCGCTGGCTCTACGACGCGCTGTTCGCACGCGCGCCGCGCAAGCCGCGCCGCCCCCGGGACGCATGA

Upstream 100 bases:

>100_bases
AAGCTCTGATCGCCGCGATCTGACCGACGACGGCCCGGCGTACCGTGTGGTGCGCCGGGCCGTTCTGTTTTGGAATCTCC
GATTTCGCTATATTGACGCG

Downstream 100 bases:

>100_bases
TGTGGACCGACGCAGGCGGGCAGGTACATGAGGCGGCATCCGGCGATGTCCGCATCGCATCGCTCGTGCCCTCGATCACC
GAACTGCTGTTCGATCTCGG

Product: short chain dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 265; Mature: 265

Protein sequence:

>265_residues
MRPQKIFITGASSGIGQALARAYAEQGAILGLVGRREDALRAFAGTLPNPGAVRVYAVDVRDVDAMGVAAADFLANVGCP
DVVIANAGVSVGTVASEREDLEVFRTVMDTNWFGTLTTFQPFLGPMREQPPGADGWRGTLVGIASVAGVRGLPGGGAYSA
SKSAVIKLLESLRLEQAREKIRVVTIAPGYIRTPMTSHNPYRMPFLMDAEVFAQKAVRRIAAGSRFAVIPWQMGVVASLL
HLMPRWLYDALFARAPRKPRRPRDA

Sequences:

>Translated_265_residues
MRPQKIFITGASSGIGQALARAYAEQGAILGLVGRREDALRAFAGTLPNPGAVRVYAVDVRDVDAMGVAAADFLANVGCP
DVVIANAGVSVGTVASEREDLEVFRTVMDTNWFGTLTTFQPFLGPMREQPPGADGWRGTLVGIASVAGVRGLPGGGAYSA
SKSAVIKLLESLRLEQAREKIRVVTIAPGYIRTPMTSHNPYRMPFLMDAEVFAQKAVRRIAAGSRFAVIPWQMGVVASLL
HLMPRWLYDALFARAPRKPRRPRDA
>Mature_265_residues
MRPQKIFITGASSGIGQALARAYAEQGAILGLVGRREDALRAFAGTLPNPGAVRVYAVDVRDVDAMGVAAADFLANVGCP
DVVIANAGVSVGTVASEREDLEVFRTVMDTNWFGTLTTFQPFLGPMREQPPGADGWRGTLVGIASVAGVRGLPGGGAYSA
SKSAVIKLLESLRLEQAREKIRVVTIAPGYIRTPMTSHNPYRMPFLMDAEVFAQKAVRRIAAGSRFAVIPWQMGVVASLL
HLMPRWLYDALFARAPRKPRRPRDA

Specific function: Unknown

COG id: COG1028

COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI20149619, Length=204, Percent_Identity=33.8235294117647, Blast_Score=99, Evalue=3e-21,
Organism=Homo sapiens, GI157739938, Length=194, Percent_Identity=28.8659793814433, Blast_Score=82, Evalue=7e-16,
Organism=Homo sapiens, GI4758504, Length=210, Percent_Identity=31.9047619047619, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI40807363, Length=259, Percent_Identity=28.1853281853282, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI40254992, Length=191, Percent_Identity=28.7958115183246, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI150247226, Length=218, Percent_Identity=29.3577981651376, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI4503817, Length=197, Percent_Identity=30.4568527918782, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI7706318, Length=200, Percent_Identity=27.5, Blast_Score=70, Evalue=1e-12,
Organism=Escherichia coli, GI1787820, Length=186, Percent_Identity=27.4193548387097, Blast_Score=74, Evalue=7e-15,
Organism=Escherichia coli, GI87082100, Length=193, Percent_Identity=34.1968911917098, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1787526, Length=195, Percent_Identity=31.2820512820513, Blast_Score=64, Evalue=7e-12,
Organism=Escherichia coli, GI1787335, Length=190, Percent_Identity=27.8947368421053, Blast_Score=62, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17567345, Length=236, Percent_Identity=30.0847457627119, Blast_Score=97, Evalue=9e-21,
Organism=Caenorhabditis elegans, GI17508895, Length=251, Percent_Identity=25.4980079681275, Blast_Score=84, Evalue=7e-17,
Organism=Caenorhabditis elegans, GI17555706, Length=206, Percent_Identity=31.0679611650485, Blast_Score=78, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI17538182, Length=209, Percent_Identity=30.622009569378, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI71997402, Length=198, Percent_Identity=27.2727272727273, Blast_Score=74, Evalue=7e-14,
Organism=Caenorhabditis elegans, GI17570069, Length=198, Percent_Identity=28.2828282828283, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17564282, Length=249, Percent_Identity=26.9076305220884, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI193203115, Length=210, Percent_Identity=28.0952380952381, Blast_Score=67, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI193203117, Length=208, Percent_Identity=28.3653846153846, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI32563809, Length=274, Percent_Identity=22.992700729927, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17507613, Length=274, Percent_Identity=22.992700729927, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI25147288, Length=193, Percent_Identity=25.9067357512953, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI71994600, Length=195, Percent_Identity=29.7435897435897, Blast_Score=65, Evalue=5e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=203, Percent_Identity=31.0344827586207, Blast_Score=74, Evalue=2e-14,
Organism=Saccharomyces cerevisiae, GI6322227, Length=199, Percent_Identity=30.1507537688442, Blast_Score=65, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6322067, Length=202, Percent_Identity=28.2178217821782, Blast_Score=65, Evalue=1e-11,
Organism=Drosophila melanogaster, GI23397609, Length=210, Percent_Identity=32.3809523809524, Blast_Score=90, Evalue=2e-18,
Organism=Drosophila melanogaster, GI21357041, Length=198, Percent_Identity=33.8383838383838, Blast_Score=84, Evalue=1e-16,
Organism=Drosophila melanogaster, GI281364892, Length=249, Percent_Identity=29.3172690763052, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI21358495, Length=197, Percent_Identity=32.48730964467, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI17737361, Length=217, Percent_Identity=32.7188940092166, Blast_Score=82, Evalue=5e-16,
Organism=Drosophila melanogaster, GI28571526, Length=218, Percent_Identity=31.1926605504587, Blast_Score=79, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24644339, Length=213, Percent_Identity=30.0469483568075, Blast_Score=74, Evalue=8e-14,
Organism=Drosophila melanogaster, GI24580925, Length=201, Percent_Identity=33.8308457711443, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI116007236, Length=216, Percent_Identity=28.7037037037037, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24643142, Length=194, Percent_Identity=31.4432989690722, Blast_Score=72, Evalue=5e-13,
Organism=Drosophila melanogaster, GI24581726, Length=262, Percent_Identity=25.9541984732824, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24641388, Length=198, Percent_Identity=32.3232323232323, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24663911, Length=196, Percent_Identity=30.1020408163265, Blast_Score=69, Evalue=5e-12,
Organism=Drosophila melanogaster, GI24639444, Length=200, Percent_Identity=32, Blast_Score=65, Evalue=3e-11,

Paralogues:

None

Copy number: 1300 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 28519; Mature: 28519

Theoretical pI: Translated: 10.72; Mature: 10.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRPQKIFITGASSGIGQALARAYAEQGAILGLVGRREDALRAFAGTLPNPGAVRVYAVDV
CCCCEEEEEECCCCHHHHHHHHHHHCCCEEEECCCCHHHHHHHHCCCCCCCEEEEEEEEC
RDVDAMGVAAADFLANVGCPDVVIANAGVSVGTVASEREDLEVFRTVMDTNWFGTLTTFQ
CCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCEEHHHHH
PFLGPMREQPPGADGWRGTLVGIASVAGVRGLPGGGAYSASKSAVIKLLESLRLEQAREK
HHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
IRVVTIAPGYIRTPMTSHNPYRMPFLMDAEVFAQKAVRRIAAGSRFAVIPWQMGVVASLL
EEEEEECCCCEECCCCCCCCCCCCEEECHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHH
HLMPRWLYDALFARAPRKPRRPRDA
HHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MRPQKIFITGASSGIGQALARAYAEQGAILGLVGRREDALRAFAGTLPNPGAVRVYAVDV
CCCCEEEEEECCCCHHHHHHHHHHHCCCEEEECCCCHHHHHHHHCCCCCCCEEEEEEEEC
RDVDAMGVAAADFLANVGCPDVVIANAGVSVGTVASEREDLEVFRTVMDTNWFGTLTTFQ
CCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCEEHHHHH
PFLGPMREQPPGADGWRGTLVGIASVAGVRGLPGGGAYSASKSAVIKLLESLRLEQAREK
HHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
IRVVTIAPGYIRTPMTSHNPYRMPFLMDAEVFAQKAVRRIAAGSRFAVIPWQMGVVASLL
EEEEEECCCCEECCCCCCCCCCCCEEECHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHH
HLMPRWLYDALFARAPRKPRRPRDA
HHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1730672 [H]