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The map label for this gene is ybeQ [H]

Identifier: 94308988

GI number: 94308988

Start: 48145

End: 48855

Strand: Direct

Name: ybeQ [H]

Synonym: Rmet_0043

Alternate gene names: 94308988

Gene position: 48145-48855 (Clockwise)

Preceding gene: 94308987

Following gene: 94308989

Centisome position: 1.23

GC content: 68.5

Gene sequence:

>711_bases
ATGTCGCAACTTGCCGCCCCTACGATCCGCCAGTCCGTCGTTGCACTGGCGCTGGCCTGCGCCCTGTCCGGCTTGAGTGC
TTACGCGGCCACCGAGCGACCGCAACCGGCACAGGAACAGACCCAGGCGGCGGTGGCCGCCTACGAGGCTGGCAATTTCG
AGGTGGCGATCCAGGGCTTTGCAGCGGCCGCGCAGAAGGGCAACCGGCTGGCCCAGTTCGACTACGCGATGATGTTGCTG
CGTGGCGAAGGCACGCCGGCGAAGCCGCAGGAGGCGCTGGTCTGGCTGCGCCGCGCGGCGGACAACCAGATGACCCACGC
GCAGTTCACATTCGGCGATCTGTACGAACGCGGTGACGTGGTGCCGAAGTCGCTGCCCGAGGCCAACCGCTGGTATGAAC
TCGCGGCGCAGGGGGGACATGTGCAGGCGCAGGTGGCGCTCGCCACCAATTACTTCACCGGCCGGGGCGTGCCCCTCGAC
TACGGTCGCGCGTTCCACTGGTACAGCAAGGCCGCCGCAGCCGGCGACGAAGGCGCGCAGTACATCGTCGCCAGCTATTA
CGAGCGCGGGTATCCGGGGGTGGTGGATCGCGATATCGAACAGGCCAAGCTCTGGTACGCCCGTGCCGCCGCGCATGGCG
ATCCGGGCGCGCTGGCCAAGCTGCGTTCGCTGCAGGACGAGGGGGCGCAGCCCGCGAAGGGCCCAATGTGA

Upstream 100 bases:

>100_bases
TTTGAGTCGATAATCTGTTATCGACATATAAGTTCCCACGGATCGCCCACTACACTGAATCAAACACCCCCAGACGCGCC
TAGCCGGATCGGAGCCAGCC

Downstream 100 bases:

>100_bases
GCGCTATGCGCGACGCGAGCGCCGATCCTGTCATACTCGCAGCGCATTGCGCCGATGCATCCCGGAGACCGTAGCCCTTG
CCCTCGCAGTCGTCACTGCC

Product: TPR repeat-containing protein, SEL1 subfamily

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 236; Mature: 235

Protein sequence:

>236_residues
MSQLAAPTIRQSVVALALACALSGLSAYAATERPQPAQEQTQAAVAAYEAGNFEVAIQGFAAAAQKGNRLAQFDYAMMLL
RGEGTPAKPQEALVWLRRAADNQMTHAQFTFGDLYERGDVVPKSLPEANRWYELAAQGGHVQAQVALATNYFTGRGVPLD
YGRAFHWYSKAAAAGDEGAQYIVASYYERGYPGVVDRDIEQAKLWYARAAAHGDPGALAKLRSLQDEGAQPAKGPM

Sequences:

>Translated_236_residues
MSQLAAPTIRQSVVALALACALSGLSAYAATERPQPAQEQTQAAVAAYEAGNFEVAIQGFAAAAQKGNRLAQFDYAMMLL
RGEGTPAKPQEALVWLRRAADNQMTHAQFTFGDLYERGDVVPKSLPEANRWYELAAQGGHVQAQVALATNYFTGRGVPLD
YGRAFHWYSKAAAAGDEGAQYIVASYYERGYPGVVDRDIEQAKLWYARAAAHGDPGALAKLRSLQDEGAQPAKGPM
>Mature_235_residues
SQLAAPTIRQSVVALALACALSGLSAYAATERPQPAQEQTQAAVAAYEAGNFEVAIQGFAAAAQKGNRLAQFDYAMMLLR
GEGTPAKPQEALVWLRRAADNQMTHAQFTFGDLYERGDVVPKSLPEANRWYELAAQGGHVQAQVALATNYFTGRGVPLDY
GRAFHWYSKAAAAGDEGAQYIVASYYERGYPGVVDRDIEQAKLWYARAAAHGDPGALAKLRSLQDEGAQPAKGPM

Specific function: Unknown

COG id: COG0790

COG function: function code R; FOG: TPR repeat, SEL1 subfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ybeT [H]

Homologues:

Organism=Homo sapiens, GI19923669, Length=179, Percent_Identity=31.2849162011173, Blast_Score=65, Evalue=6e-11,
Organism=Escherichia coli, GI87081769, Length=173, Percent_Identity=34.6820809248555, Blast_Score=85, Evalue=5e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006597
- InterPro:   IPR011990 [H]

Pfam domain/function: PF08238 Sel1 [H]

EC number: NA

Molecular weight: Translated: 25384; Mature: 25252

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQLAAPTIRQSVVALALACALSGLSAYAATERPQPAQEQTQAAVAAYEAGNFEVAIQGF
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEEEEHHH
AAAAQKGNRLAQFDYAMMLLRGEGTPAKPQEALVWLRRAADNQMTHAQFTFGDLYERGDV
HHHHHCCCCCHHHHHEEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHHHHCCC
VPKSLPEANRWYELAAQGGHVQAQVALATNYFTGRGVPLDYGRAFHWYSKAAAAGDEGAQ
CCCCCCCCHHHHHHHCCCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCHH
YIVASYYERGYPGVVDRDIEQAKLWYARAAAHGDPGALAKLRSLQDEGAQPAKGPM
HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
SQLAAPTIRQSVVALALACALSGLSAYAATERPQPAQEQTQAAVAAYEAGNFEVAIQGF
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEEEEHHH
AAAAQKGNRLAQFDYAMMLLRGEGTPAKPQEALVWLRRAADNQMTHAQFTFGDLYERGDV
HHHHHCCCCCHHHHHEEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHHHHCCC
VPKSLPEANRWYELAAQGGHVQAQVALATNYFTGRGVPLDYGRAFHWYSKAAAAGDEGAQ
CCCCCCCCHHHHHHHCCCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCHH
YIVASYYERGYPGVVDRDIEQAKLWYARAAAHGDPGALAKLRSLQDEGAQPAKGPM
HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]