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The map label for this gene is yeaM [H]

Identifier: 94308967

GI number: 94308967

Start: 26084

End: 26902

Strand: Reverse

Name: yeaM [H]

Synonym: Rmet_0022

Alternate gene names: 94308967

Gene position: 26902-26084 (Counterclockwise)

Preceding gene: 94308969

Following gene: 94308957

Centisome position: 0.68

GC content: 67.4

Gene sequence:

>819_bases
ATGCCAGCCGAAGCGCCGAACGCTGCCCATGCCGACGGGCGGCCCGATACCTACTCGGAACAGCCCGCCTACCTCCAGTA
CGACCGCGGCCCGATGCCTGTGGCGGCCATGGCGGCGGACTACCTGCCGACCCATGTCACCAAGCCCCATCAGCACCCGC
ACGCGCAACTCATCCACGCCGTGCACGGGGTAATGGTGGTCTCGACGTCAGAAGGACAGTGGATCGTGCCGCCGACACGC
GGCATGTGGATGCCCGGTGGCACCGTGCACTGGATCCGCATGGTCGGGCACGTGCAGATGCGCACGGCCTACATTCGCCC
CGACGCCGCGCCGAACCTGCCCACGCGCTGTACCGTACTCGGTATTTCTCCGCTGCTGCGCGAGTTGATCCTGGCCGCGA
TCGACATTCCCCTGCCCTATTCGCCCGACTCGCGCGAATCCCGGCTGATGCAATTGCTGCTCGATGAAGTCACGCTGGTA
CCCACGCTGCCGCTCCACCTGCCCCGCCCGAAGGACAAGGACCTGCGCGTGATCTGCGAGCGGATCACCGACAGCCCCGA
CTCTGGCCTGACGCTGGCTGACTGGGGCGACAGGCTTGGCGTGGACCCCAAGACCATTCAGCGCCGATTCGCGCGGGAGA
CCGGGATGACGTTCGGCCAGTGGCGCCAGCAGGCACGGCTGCTGGCCGCGCTAGAGCGGCTGGCGGCAGGCGACAAGGTG
GTGGATGTGGCGCTCGACATGGGCTATGGCAGCCCGAGCGCCTTCGCGACGATGTTCCGCCGGCAGTTCGGCGTGCCGCC
GAGTGCCTTCTTCAAATAG

Upstream 100 bases:

>100_bases
CGGGCGCCCGAACAGCGCGCGGCCGGGAAGTGTGACGATGCTAATTGGCAAACTGCCGCCTGTCCTGCGAGAATGAGGCC
GTAACTTTGGAGAAAAGGAC

Downstream 100 bases:

>100_bases
TCCTGTCGCCCTGTCCTACCCGGCGAGGTAACGCTCGACCAGCCGCGTCCAGTAAGCCGCCCCGACGGTCAGGTTGTCGT
CATTGAAGTCGTAGCCGGCG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 272; Mature: 271

Protein sequence:

>272_residues
MPAEAPNAAHADGRPDTYSEQPAYLQYDRGPMPVAAMAADYLPTHVTKPHQHPHAQLIHAVHGVMVVSTSEGQWIVPPTR
GMWMPGGTVHWIRMVGHVQMRTAYIRPDAAPNLPTRCTVLGISPLLRELILAAIDIPLPYSPDSRESRLMQLLLDEVTLV
PTLPLHLPRPKDKDLRVICERITDSPDSGLTLADWGDRLGVDPKTIQRRFARETGMTFGQWRQQARLLAALERLAAGDKV
VDVALDMGYGSPSAFATMFRRQFGVPPSAFFK

Sequences:

>Translated_272_residues
MPAEAPNAAHADGRPDTYSEQPAYLQYDRGPMPVAAMAADYLPTHVTKPHQHPHAQLIHAVHGVMVVSTSEGQWIVPPTR
GMWMPGGTVHWIRMVGHVQMRTAYIRPDAAPNLPTRCTVLGISPLLRELILAAIDIPLPYSPDSRESRLMQLLLDEVTLV
PTLPLHLPRPKDKDLRVICERITDSPDSGLTLADWGDRLGVDPKTIQRRFARETGMTFGQWRQQARLLAALERLAAGDKV
VDVALDMGYGSPSAFATMFRRQFGVPPSAFFK
>Mature_271_residues
PAEAPNAAHADGRPDTYSEQPAYLQYDRGPMPVAAMAADYLPTHVTKPHQHPHAQLIHAVHGVMVVSTSEGQWIVPPTRG
MWMPGGTVHWIRMVGHVQMRTAYIRPDAAPNLPTRCTVLGISPLLRELILAAIDIPLPYSPDSRESRLMQLLLDEVTLVP
TLPLHLPRPKDKDLRVICERITDSPDSGLTLADWGDRLGVDPKTIQRRFARETGMTFGQWRQQARLLAALERLAAGDKVV
DVALDMGYGSPSAFATMFRRQFGVPPSAFFK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788091, Length=222, Percent_Identity=35.5855855855856, Blast_Score=143, Evalue=1e-35,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding [H]

EC number: NA

Molecular weight: Translated: 30162; Mature: 30031

Theoretical pI: Translated: 8.26; Mature: 8.26

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPAEAPNAAHADGRPDTYSEQPAYLQYDRGPMPVAAMAADYLPTHVTKPHQHPHAQLIHA
CCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHH
VHGVMVVSTSEGQWIVPPTRGMWMPGGTVHWIRMVGHVQMRTAYIRPDAAPNLPTRCTVL
HHCEEEEEECCCCEEECCCCCCCCCCCHHHHHHHHHHHHHEEEEECCCCCCCCCCEEEEE
GISPLLRELILAAIDIPLPYSPDSRESRLMQLLLDEVTLVPTLPLHLPRPKDKDLRVICE
CHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
RITDSPDSGLTLADWGDRLGVDPKTIQRRFARETGMTFGQWRQQARLLAALERLAAGDKV
HHCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCE
VDVALDMGYGSPSAFATMFRRQFGVPPSAFFK
EEEEEECCCCCHHHHHHHHHHHHCCCHHHHCC
>Mature Secondary Structure 
PAEAPNAAHADGRPDTYSEQPAYLQYDRGPMPVAAMAADYLPTHVTKPHQHPHAQLIHA
CCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHH
VHGVMVVSTSEGQWIVPPTRGMWMPGGTVHWIRMVGHVQMRTAYIRPDAAPNLPTRCTVL
HHCEEEEEECCCCEEECCCCCCCCCCCHHHHHHHHHHHHHEEEEECCCCCCCCCCEEEEE
GISPLLRELILAAIDIPLPYSPDSRESRLMQLLLDEVTLVPTLPLHLPRPKDKDLRVICE
CHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
RITDSPDSGLTLADWGDRLGVDPKTIQRRFARETGMTFGQWRQQARLLAALERLAAGDKV
HHCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCE
VDVALDMGYGSPSAFATMFRRQFGVPPSAFFK
EEEEEECCCCCHHHHHHHHHHHHCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]