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The map label for this gene is 93007080

Identifier: 93007080

GI number: 93007080

Start: 2768563

End: 2769168

Strand: Reverse

Name: 93007080

Synonym: Pcryo_2256

Alternate gene names: NA

Gene position: 2769168-2768563 (Counterclockwise)

Preceding gene: 93007081

Following gene: 93007076

Centisome position: 90.5

GC content: 41.42

Gene sequence:

>606_bases
ATGAAGTGGCAGCAATTGGCAACGCTTGTAATCGTACGCATTAAGCAAGTATTTGGTCTATATGCTTTTGTACTGATACC
AATGTGGGTGATGTTTTTTCTTAATGACACCGTATTTTTTGGTCTATGGAATATTTTCGGTATCGTACCAAGAACATTGG
ATATTGGCAGTATGATAGGGGTATTTGCCTCATGGACGATGCATAGTAATTTCTCACATCTAGTGGGAAATTCGCTGACA
CTGATGCAGATTTTGTTCTTATTTGGTTTATTTGAGAATAACGCTTATCGTACTATTCTTAAGCTTATCATCGCCTCAGG
TATAATGACTTGGATAATAGCTTCGCCACTGACGATTCATATCGGCGCTTCAGGGCTGTGTTTTGCGATGCTTGGGTTTA
TGATAGGTGGGGCAGTGTTCGCTAGGCGTTGGGGCTATTTACTTGCCTGTATTGTGATGGGTACGGGTTATTGGCTGACT
ATCAAACAAGGTTTGATACCGCAGCAAGGTATCTCATTTGCGGCGCATTTTGGTGGTCTATGCGCCGGATTGTTGTTGGG
TGCCAATTCTAAACATGCTTATACGAAAGTGAATAATCGTTATTAG

Upstream 100 bases:

>100_bases
TAAAGATGCGTCATCGCTATCTTTTAAACCCGTAGAAACGACGATTTTATCTACCAGTCATTAACATGCGTTTAACAAGA
TAAAAAGGATAAAACAGTAG

Downstream 100 bases:

>100_bases
CCTTATTTTTCGGCAAATATATTTAGACAGACTGTTCAATAATTCATAAAGATAACGATAAGTCAGCTAACAGTGGCTTC
AATGATTGAGTTATTTTTTA

Product: rhomboid-like protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 201; Mature: 201

Protein sequence:

>201_residues
MKWQQLATLVIVRIKQVFGLYAFVLIPMWVMFFLNDTVFFGLWNIFGIVPRTLDIGSMIGVFASWTMHSNFSHLVGNSLT
LMQILFLFGLFENNAYRTILKLIIASGIMTWIIASPLTIHIGASGLCFAMLGFMIGGAVFARRWGYLLACIVMGTGYWLT
IKQGLIPQQGISFAAHFGGLCAGLLLGANSKHAYTKVNNRY

Sequences:

>Translated_201_residues
MKWQQLATLVIVRIKQVFGLYAFVLIPMWVMFFLNDTVFFGLWNIFGIVPRTLDIGSMIGVFASWTMHSNFSHLVGNSLT
LMQILFLFGLFENNAYRTILKLIIASGIMTWIIASPLTIHIGASGLCFAMLGFMIGGAVFARRWGYLLACIVMGTGYWLT
IKQGLIPQQGISFAAHFGGLCAGLLLGANSKHAYTKVNNRY
>Mature_201_residues
MKWQQLATLVIVRIKQVFGLYAFVLIPMWVMFFLNDTVFFGLWNIFGIVPRTLDIGSMIGVFASWTMHSNFSHLVGNSLT
LMQILFLFGLFENNAYRTILKLIIASGIMTWIIASPLTIHIGASGLCFAMLGFMIGGAVFARRWGYLLACIVMGTGYWLT
IKQGLIPQQGISFAAHFGGLCAGLLLGANSKHAYTKVNNRY

Specific function: Unknown

COG id: COG0705

COG function: function code R; Uncharacterized membrane protein (homolog of Drosophila rhomboid)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22371; Mature: 22371

Theoretical pI: Translated: 10.29; Mature: 10.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
6.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKWQQLATLVIVRIKQVFGLYAFVLIPMWVMFFLNDTVFFGLWNIFGIVPRTLDIGSMIG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VFASWTMHSNFSHLVGNSLTLMQILFLFGLFENNAYRTILKLIIASGIMTWIIASPLTIH
HHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCEEEE
IGASGLCFAMLGFMIGGAVFARRWGYLLACIVMGTGYWLTIKQGLIPQQGISFAAHFGGL
ECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHH
CAGLLLGANSKHAYTKVNNRY
HHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKWQQLATLVIVRIKQVFGLYAFVLIPMWVMFFLNDTVFFGLWNIFGIVPRTLDIGSMIG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VFASWTMHSNFSHLVGNSLTLMQILFLFGLFENNAYRTILKLIIASGIMTWIIASPLTIH
HHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCEEEE
IGASGLCFAMLGFMIGGAVFARRWGYLLACIVMGTGYWLTIKQGLIPQQGISFAAHFGGL
ECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHH
CAGLLLGANSKHAYTKVNNRY
HHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA