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The map label for this gene is exoX [C]

Identifier: 93007037

GI number: 93007037

Start: 2718167

End: 2718895

Strand: Reverse

Name: exoX [C]

Synonym: Pcryo_2213

Alternate gene names: 93007037

Gene position: 2718895-2718167 (Counterclockwise)

Preceding gene: 93007039

Following gene: 93007035

Centisome position: 88.86

GC content: 47.46

Gene sequence:

>729_bases
ATGGCTGCTGCTTTTAACATGGTCGATACTGCGCTGATTATCGATACTGAAACCGATCAAGGTCGTGATCCACGTCCTAT
CCAAGTGGCGACGATTAATGTAGCGACGGGCTTTGAGTGGATGAAATACTTTAATAGTGGGCGCTCAATATCGCCAGTTG
TGATTAGAGTCCATGGCATTACCGATGACGATGTAGCGGGGCTTGAGCGGTTTGAGCTTGAGCAGTTTGAGTTACCTGAG
TATCTTATCGGTCATAATGTACGCTTTGATTGGCGGGTGATTGGCAGTCCTTCCGCTAAGCTAATTTGCACCGTTAGGCT
GGCGCGCGTCGCGTTTCCTGAATGGAGCGCCTATGGTCAGTCCAAATGTATTGAGCAGTTATTGGGCAAGGGTGAAGCTA
GTAGGATGACGATTGCCGCTCATGATGCGCTCGGTGATGCTCGTATGTGTTATCTGCTGTATCAGGCTTGCTGCGAGCGC
TTAGAGATTGCACCAACTGATTTTGCAGCAGCGCATGCTATTGCCAATAAAGCCAATCCAGTCGGTAAAATGCCCTTTGG
CAAGCATAAAGGCATGCCAATCAAAGAGGTGCCTATTAGCTATGTAAAATGGATGCTGGGTAACATCCATAATATGCAGC
CGTCGCTTTATTCTGCATTGACCAAACGCATCAAGGCAGAAGCGGCAGCAAACGCAAAAGAATCAATAGACGAATCCGTA
ATTAAATAG

Upstream 100 bases:

>100_bases
GTAGTGTTTTGCTCTTTTAAAAGTAGATTAATTATAATGCTCCTTTTAAACGAGCAAAATTGTCTGTCATTTATGTCCAA
CTTGCTATGGTTAAATTTTT

Downstream 100 bases:

>100_bases
GCTCTGAAGTCTATTGATTATGTAACCAATCAATAGCCATTTGCCACAGCTTAGGCGCTTTAGCATTCGTCCTGCTGCTA
AAATAACGCATGTGACCGAT

Product: exonuclease

Products: NA

Alternate protein names: DNA Polymerase III Epsilon Subunit; DNA Exonuclease X; Exonuclease; Exodeoxyribonuclease X

Number of amino acids: Translated: 242; Mature: 241

Protein sequence:

>242_residues
MAAAFNMVDTALIIDTETDQGRDPRPIQVATINVATGFEWMKYFNSGRSISPVVIRVHGITDDDVAGLERFELEQFELPE
YLIGHNVRFDWRVIGSPSAKLICTVRLARVAFPEWSAYGQSKCIEQLLGKGEASRMTIAAHDALGDARMCYLLYQACCER
LEIAPTDFAAAHAIANKANPVGKMPFGKHKGMPIKEVPISYVKWMLGNIHNMQPSLYSALTKRIKAEAAANAKESIDESV
IK

Sequences:

>Translated_242_residues
MAAAFNMVDTALIIDTETDQGRDPRPIQVATINVATGFEWMKYFNSGRSISPVVIRVHGITDDDVAGLERFELEQFELPE
YLIGHNVRFDWRVIGSPSAKLICTVRLARVAFPEWSAYGQSKCIEQLLGKGEASRMTIAAHDALGDARMCYLLYQACCER
LEIAPTDFAAAHAIANKANPVGKMPFGKHKGMPIKEVPISYVKWMLGNIHNMQPSLYSALTKRIKAEAAANAKESIDESV
IK
>Mature_241_residues
AAAFNMVDTALIIDTETDQGRDPRPIQVATINVATGFEWMKYFNSGRSISPVVIRVHGITDDDVAGLERFELEQFELPEY
LIGHNVRFDWRVIGSPSAKLICTVRLARVAFPEWSAYGQSKCIEQLLGKGEASRMTIAAHDALGDARMCYLLYQACCERL
EIAPTDFAAAHAIANKANPVGKMPFGKHKGMPIKEVPISYVKWMLGNIHNMQPSLYSALTKRIKAEAAANAKESIDESVI
K

Specific function: Capable Of Degrading Both Single-Strand And Double- Strand DNA With 3' To 5' Polarity. Has Higher Affinity For ssDNA Ends Than For dsDNA. May Facilitate Recombinational Repair By Pre- Synaptic And/Or Post-Synaptic DNA Degradation. [C]

COG id: COG0847

COG function: function code L; DNA polymerase III, epsilon subunit and related 3'-5' exonucleases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 3.1.11.- [C]

Molecular weight: Translated: 26802; Mature: 26671

Theoretical pI: Translated: 7.10; Mature: 7.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAAFNMVDTALIIDTETDQGRDPRPIQVATINVATGFEWMKYFNSGRSISPVVIRVHGI
CCCCHHHHCEEEEEECCCCCCCCCCCEEEEEEEEHHHHHHHHHHHCCCCCCEEEEEEECC
TDDDVAGLERFELEQFELPEYLIGHNVRFDWRVIGSPSAKLICTVRLARVAFPEWSAYGQ
CCCHHHHHHHHHHHHHCCCHHHHCCCCEEEEEEECCCCCEEEEEEEHHHHCCCCHHHCCH
SKCIEQLLGKGEASRMTIAAHDALGDARMCYLLYQACCERLEIAPTDFAAAHAIANKANP
HHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCC
VGKMPFGKHKGMPIKEVPISYVKWMLGNIHNMQPSLYSALTKRIKAEAAANAKESIDESV
CCCCCCCCCCCCCHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHH
IK
CC
>Mature Secondary Structure 
AAAFNMVDTALIIDTETDQGRDPRPIQVATINVATGFEWMKYFNSGRSISPVVIRVHGI
CCCHHHHCEEEEEECCCCCCCCCCCEEEEEEEEHHHHHHHHHHHCCCCCCEEEEEEECC
TDDDVAGLERFELEQFELPEYLIGHNVRFDWRVIGSPSAKLICTVRLARVAFPEWSAYGQ
CCCHHHHHHHHHHHHHCCCHHHHCCCCEEEEEEECCCCCEEEEEEEHHHHCCCCHHHCCH
SKCIEQLLGKGEASRMTIAAHDALGDARMCYLLYQACCERLEIAPTDFAAAHAIANKANP
HHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCC
VGKMPFGKHKGMPIKEVPISYVKWMLGNIHNMQPSLYSALTKRIKAEAAANAKESIDESV
CCCCCCCCCCCCCHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHH
IK
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA