| Definition | Psychrobacter cryohalolentis K5 chromosome, complete genome. |
|---|---|
| Accession | NC_007969 |
| Length | 3,059,876 |
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The map label for this gene is slt [H]
Identifier: 93006870
GI number: 93006870
Start: 2513337
End: 2515544
Strand: Reverse
Name: slt [H]
Synonym: Pcryo_2046
Alternate gene names: 93006870
Gene position: 2515544-2513337 (Counterclockwise)
Preceding gene: 93006872
Following gene: 93006869
Centisome position: 82.21
GC content: 46.83
Gene sequence:
>2208_bases ATGAAAAAGCCGCAGGTTGCTCCTGATATGATTGATAAAAACACCTATCAAAATGACACACATAAGAGTTCTAAAAAAAT GACGCTTAAAAAAAGCGCGCTGAGCTTGGCAGCGGCTGTCGGTGCTTTGGGCTTTTCGCAAGTAGCCTGTGCAGAATTGA CATGGGGTGAGAGCGGCAGTTCTGAGCAACAAGGCAAATATCAAGTAGAGCGCTATCAGCCTGATGGCTATCAACCAAAC AGTCAACAAAACACTTCTCAACAAAGTACTTTTCAACAAAACAATGCTTATCAACCAGACAATGGGGTGGGTTCATTCAC CGCAGCAGCCATTGCGGCAGAGCGCGGTGATGTCAATGCGCTTTATAATTATGAGCAAGCTATGAGCGGTGGCTTATTTG CCATGTATCCTACTTACTGGCGGATGAATGTAGATTTGAATTCGCAAAGCCCTGCGGCAGTGTCGCAGTTTGTGCGCCAA TATCCAGATACGGTCATGGCAGAAAAACTGGCCGCTGATTTTGCTGAAACCAAAGCGGGTTCAAATGATTATGCTGCCGT GCGCCAAGTGGCAAATCTGATCACCAATGCCGATGACAGTGAGAAGTGCGCCGTTGCGCTTGGGTTTAATAATGGCGGCG ATACCATGCGTGCTATGGCAGCGAAGTCTGATGTCTGGTTGACGACCAAAAAACAGCCAGCTCTATGTGATCAGCTAGCG CTTGAGATGAATAACAATGCCTTAATTAGCAATCCAGAGAGAGTCTCTCGCCTCAAACGTATGCTGCGTAAAGGCAAAAC CGGTGATATCATGGCGTTATCTTCGCGCTTAGGTATGCCCATTCCTTATGCATCACTGAGTGACATCCAGCTTAATCCAT CATCGTTCTTTAGCCGTTTCGCCCGCGAACCTGCCAGCCAAACCAATCAATATTTGTATCTTTATGCGATGGGACGTGTC GCCGAAAAGTCTTATCGTGAGGCGGCGTTGCAGTTAGAGTTTGATATAAAGCAAGACAATCAGCGTTCAGCCAAACTGTT AACCGATGATACTCGCCGCGCAGCTTATCGTACTCTTGGTGTACAGCGCATGAATCACAATACCGATGATGGCTTTAACG TTGAAGCCGTCGACTGGTTCCGTAACAGCTTAGACAGTGACTTTAGTTTTGAAGAAGCAGAATATTATGCCATGGCAGCG ATTCGTTTTAGTCGCTGGGATGATGTGGTCGAAGCCATCTCAAGAATGGATGCCGAAACCCAAAAAGCCAATCAATGGCA GTATTGGTTGGCACGCGCTTATGAGCAGTCAAATGATGGCAACAAGCGCAATACTGCTAAGAAAATGTATCAAAATCTCG CTAAAAGTAACGAATATTATGGTTTGATGGCAAAGGAAAAAGTTGGTCAACGTTTTGATGCCAGCCGTTTGGGTGGTAGT AATTTACCTAATGTCAGTAGCGCTGATCGTGCGCGCGTCATGCAAAATCAACATTTTGCCCGTGCATTTGCGTTATATAA CGCTGATGCCAGCCGAGCTTATGCCAATCGTGAGTGGAACTGGGCGGTCAAAAAAGCACGTGATAACCGTGATGAAAAAT TAATCATTGCAGCAGCGCGTCAAGCCTATGATATGGGCTGGCTAGACCGTGCGATATATGCCATTGACAATACTGACAAC GTCAATAGTCTTGCAATATCGCATCCGATGCCGCACCAAGATGCTGTAGTACGCTATAGCCAGTCGGCTGGTATCGATCC CGCTTGGGCATATGGCATCATGCGTCAAGAGAGCCGATTTGTAGCCTCTGCGCGCTCAAATGTCGGCGCAAGTGGACTTA TGCAAGTCATGCCAGATACCGCAAAATATATTGCTCGCAATTTGGGCGAGACATATAGCGCAAGTCGTGCCAATAGCGGT GATACCAATATCCGTTATGGTACATGGTATATGGGTGATATCTTTGGGAAGCTAAACAGTCAGCCTGTATTGGCGACGGC GGGCTACAATGCTGGTCCAAACAATGCCAAGCGTTGGCAGCCAACCTATGGCTCATTGGCAGCGGATCAGTACGTTGAGT CTATTGCTTTTCCTGAAACACGGAATTATGTCAAACATGTGATGGAAAATGCCACCATCTATAGCAGCTTATTGGGTAAT GGTCAGCCAATCACTCAGCGTATGGGTACCGTACCTGCCGCATTTTAA
Upstream 100 bases:
>100_bases TATATTTTAGAATCATTTGATTAGAGTCACTTTTTTAAAAGCCTTTTTAAAATATTATTTAAGACCAATTATATAAGACC CACTATAAAAGAGAGTCAGT
Downstream 100 bases:
>100_bases TTTGAGTAATAGTAAAAAACCATTAACGATAAAAGGTTAATGGTTTTTTTACAGCTGCAATTTGTTAGCTTAGCAATCGT ATTTTGACGACCAAATTTTT
Product: lytic transglycosylase catalytic subunit
Products: 1,6-Anhydrobond [C]
Alternate protein names: Exomuramidase; Peptidoglycan lytic exotransglycosylase; Slt70 [H]
Number of amino acids: Translated: 735; Mature: 735
Protein sequence:
>735_residues MKKPQVAPDMIDKNTYQNDTHKSSKKMTLKKSALSLAAAVGALGFSQVACAELTWGESGSSEQQGKYQVERYQPDGYQPN SQQNTSQQSTFQQNNAYQPDNGVGSFTAAAIAAERGDVNALYNYEQAMSGGLFAMYPTYWRMNVDLNSQSPAAVSQFVRQ YPDTVMAEKLAADFAETKAGSNDYAAVRQVANLITNADDSEKCAVALGFNNGGDTMRAMAAKSDVWLTTKKQPALCDQLA LEMNNNALISNPERVSRLKRMLRKGKTGDIMALSSRLGMPIPYASLSDIQLNPSSFFSRFAREPASQTNQYLYLYAMGRV AEKSYREAALQLEFDIKQDNQRSAKLLTDDTRRAAYRTLGVQRMNHNTDDGFNVEAVDWFRNSLDSDFSFEEAEYYAMAA IRFSRWDDVVEAISRMDAETQKANQWQYWLARAYEQSNDGNKRNTAKKMYQNLAKSNEYYGLMAKEKVGQRFDASRLGGS NLPNVSSADRARVMQNQHFARAFALYNADASRAYANREWNWAVKKARDNRDEKLIIAAARQAYDMGWLDRAIYAIDNTDN VNSLAISHPMPHQDAVVRYSQSAGIDPAWAYGIMRQESRFVASARSNVGASGLMQVMPDTAKYIARNLGETYSASRANSG DTNIRYGTWYMGDIFGKLNSQPVLATAGYNAGPNNAKRWQPTYGSLAADQYVESIAFPETRNYVKHVMENATIYSSLLGN GQPITQRMGTVPAAF
Sequences:
>Translated_735_residues MKKPQVAPDMIDKNTYQNDTHKSSKKMTLKKSALSLAAAVGALGFSQVACAELTWGESGSSEQQGKYQVERYQPDGYQPN SQQNTSQQSTFQQNNAYQPDNGVGSFTAAAIAAERGDVNALYNYEQAMSGGLFAMYPTYWRMNVDLNSQSPAAVSQFVRQ YPDTVMAEKLAADFAETKAGSNDYAAVRQVANLITNADDSEKCAVALGFNNGGDTMRAMAAKSDVWLTTKKQPALCDQLA LEMNNNALISNPERVSRLKRMLRKGKTGDIMALSSRLGMPIPYASLSDIQLNPSSFFSRFAREPASQTNQYLYLYAMGRV AEKSYREAALQLEFDIKQDNQRSAKLLTDDTRRAAYRTLGVQRMNHNTDDGFNVEAVDWFRNSLDSDFSFEEAEYYAMAA IRFSRWDDVVEAISRMDAETQKANQWQYWLARAYEQSNDGNKRNTAKKMYQNLAKSNEYYGLMAKEKVGQRFDASRLGGS NLPNVSSADRARVMQNQHFARAFALYNADASRAYANREWNWAVKKARDNRDEKLIIAAARQAYDMGWLDRAIYAIDNTDN VNSLAISHPMPHQDAVVRYSQSAGIDPAWAYGIMRQESRFVASARSNVGASGLMQVMPDTAKYIARNLGETYSASRANSG DTNIRYGTWYMGDIFGKLNSQPVLATAGYNAGPNNAKRWQPTYGSLAADQYVESIAFPETRNYVKHVMENATIYSSLLGN GQPITQRMGTVPAAF >Mature_735_residues MKKPQVAPDMIDKNTYQNDTHKSSKKMTLKKSALSLAAAVGALGFSQVACAELTWGESGSSEQQGKYQVERYQPDGYQPN SQQNTSQQSTFQQNNAYQPDNGVGSFTAAAIAAERGDVNALYNYEQAMSGGLFAMYPTYWRMNVDLNSQSPAAVSQFVRQ YPDTVMAEKLAADFAETKAGSNDYAAVRQVANLITNADDSEKCAVALGFNNGGDTMRAMAAKSDVWLTTKKQPALCDQLA LEMNNNALISNPERVSRLKRMLRKGKTGDIMALSSRLGMPIPYASLSDIQLNPSSFFSRFAREPASQTNQYLYLYAMGRV AEKSYREAALQLEFDIKQDNQRSAKLLTDDTRRAAYRTLGVQRMNHNTDDGFNVEAVDWFRNSLDSDFSFEEAEYYAMAA IRFSRWDDVVEAISRMDAETQKANQWQYWLARAYEQSNDGNKRNTAKKMYQNLAKSNEYYGLMAKEKVGQRFDASRLGGS NLPNVSSADRARVMQNQHFARAFALYNADASRAYANREWNWAVKKARDNRDEKLIIAAARQAYDMGWLDRAIYAIDNTDN VNSLAISHPMPHQDAVVRYSQSAGIDPAWAYGIMRQESRFVASARSNVGASGLMQVMPDTAKYIARNLGETYSASRANSG DTNIRYGTWYMGDIFGKLNSQPVLATAGYNAGPNNAKRWQPTYGSLAADQYVESIAFPETRNYVKHVMENATIYSSLLGN GQPITQRMGTVPAAF
Specific function: Murein-degrading enzyme. Catalyzes the cleavage of the glycosidic bonds between N-acetylmuramic acid and N- acetylglucosamine residues in peptidoglycan. May play a role in recycling of muropeptides during cell elongation and/or cell division [H]
COG id: COG0741
COG function: function code M; Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains)
Gene ontology:
Cell location: Periplasm. Note=Tightly associated with the murein sacculus (By similarity) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the transglycosylase slt family [H]
Homologues:
Organism=Escherichia coli, GI87082441, Length=610, Percent_Identity=25.9016393442623, Blast_Score=149, Evalue=7e-37,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016026 - InterPro: IPR008258 - InterPro: IPR012289 - InterPro: IPR008939 - InterPro: IPR000189 [H]
Pfam domain/function: PF01464 SLT [H]
EC number: 3.2.1.- [C]
Molecular weight: Translated: 81969; Mature: 81969
Theoretical pI: Translated: 8.95; Mature: 8.95
Prosite motif: PS00922 TRANSGLYCOSYLASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKPQVAPDMIDKNTYQNDTHKSSKKMTLKKSALSLAAAVGALGFSQVACAELTWGESGS CCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHEECCCCCC SEQQGKYQVERYQPDGYQPNSQQNTSQQSTFQQNNAYQPDNGVGSFTAAAIAAERGDVNA CCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCHH LYNYEQAMSGGLFAMYPTYWRMNVDLNSQSPAAVSQFVRQYPDTVMAEKLAADFAETKAG HHCHHHHHCCCEEEECCCEEEEEEECCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCC SNDYAAVRQVANLITNADDSEKCAVALGFNNGGDTMRAMAAKSDVWLTTKKQPALCDQLA CCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHCCCCEEEECCCCCHHHHHHH LEMNNNALISNPERVSRLKRMLRKGKTGDIMALSSRLGMPIPYASLSDIQLNPSSFFSRF HHCCCCCEECCHHHHHHHHHHHHCCCCCCEEEEHHHCCCCCCCCCCCCCEECHHHHHHHH AREPASQTNQYLYLYAMGRVAEKSYREAALQLEFDIKQDNQRSAKLLTDDTRRAAYRTLG HHCCHHHCCCEEEEEEHHHHHHHHHHHHEEEEEEECCCCCCCHHHHHCCHHHHHHHHHHH VQRMNHNTDDGFNVEAVDWFRNSLDSDFSFEEAEYYAMAAIRFSRWDDVVEAISRMDAET HHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHH QKANQWQYWLARAYEQSNDGNKRNTAKKMYQNLAKSNEYYGLMAKEKVGQRFDASRLGGS HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHCCCCCHHHCCCC NLPNVSSADRARVMQNQHFARAFALYNADASRAYANREWNWAVKKARDNRDEKLIIAAAR CCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCHHHHHHCCCCCCEEEEEEHH QAYDMGWLDRAIYAIDNTDNVNSLAISHPMPHQDAVVRYSQSAGIDPAWAYGIMRQESRF HHHHHHHHHHEEEEECCCCCCCEEEECCCCCCHHHHHEECCCCCCCHHHHHHHHHHHHHH VASARSNVGASGLMQVMPDTAKYIARNLGETYSASRANSGDTNIRYGTWYMGDIFGKLNS HHHHHCCCCHHHHHHHCCHHHHHHHHHHCCHHCCCCCCCCCCCEEEEEEEHHHHHHCCCC QPVLATAGYNAGPNNAKRWQPTYGSLAADQYVESIAFPETRNYVKHVMENATIYSSLLGN CCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC GQPITQRMGTVPAAF CCHHHHHHCCCCCCC >Mature Secondary Structure MKKPQVAPDMIDKNTYQNDTHKSSKKMTLKKSALSLAAAVGALGFSQVACAELTWGESGS CCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHEECCCCCC SEQQGKYQVERYQPDGYQPNSQQNTSQQSTFQQNNAYQPDNGVGSFTAAAIAAERGDVNA CCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCHH LYNYEQAMSGGLFAMYPTYWRMNVDLNSQSPAAVSQFVRQYPDTVMAEKLAADFAETKAG HHCHHHHHCCCEEEECCCEEEEEEECCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCC SNDYAAVRQVANLITNADDSEKCAVALGFNNGGDTMRAMAAKSDVWLTTKKQPALCDQLA CCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHCCCCEEEECCCCCHHHHHHH LEMNNNALISNPERVSRLKRMLRKGKTGDIMALSSRLGMPIPYASLSDIQLNPSSFFSRF HHCCCCCEECCHHHHHHHHHHHHCCCCCCEEEEHHHCCCCCCCCCCCCCEECHHHHHHHH AREPASQTNQYLYLYAMGRVAEKSYREAALQLEFDIKQDNQRSAKLLTDDTRRAAYRTLG HHCCHHHCCCEEEEEEHHHHHHHHHHHHEEEEEEECCCCCCCHHHHHCCHHHHHHHHHHH VQRMNHNTDDGFNVEAVDWFRNSLDSDFSFEEAEYYAMAAIRFSRWDDVVEAISRMDAET HHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHH QKANQWQYWLARAYEQSNDGNKRNTAKKMYQNLAKSNEYYGLMAKEKVGQRFDASRLGGS HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHCCCCCHHHCCCC NLPNVSSADRARVMQNQHFARAFALYNADASRAYANREWNWAVKKARDNRDEKLIIAAAR CCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCHHHHHHCCCCCCEEEEEEHH QAYDMGWLDRAIYAIDNTDNVNSLAISHPMPHQDAVVRYSQSAGIDPAWAYGIMRQESRF HHHHHHHHHHEEEEECCCCCCCEEEECCCCCCHHHHHEECCCCCCCHHHHHHHHHHHHHH VASARSNVGASGLMQVMPDTAKYIARNLGETYSASRANSGDTNIRYGTWYMGDIFGKLNS HHHHHCCCCHHHHHHHCCHHHHHHHHHHCCHHCCCCCCCCCCCEEEEEEEHHHHHHCCCC QPVLATAGYNAGPNNAKRWQPTYGSLAADQYVESIAFPETRNYVKHVMENATIYSSLLGN CCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC GQPITQRMGTVPAAF CCHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: Muramic Acid Residue (N-Acetylmuramic Acid And N-Acetylglucosamine Residues) [C]
Specific reaction: Cleavage Of The Beta-1,4-Glycosidic Bond Between N-Acetylmuramic Acid And N-Acetylglucosamine Residues, Thereby Conserving The Energy In A Newly Synthesized 1,6-Anhydrobond In The Muramic Acid Residue. [C]
General reaction: Cleavage Of The Beta-1,4-Glycosidic Bond [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]