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The map label for this gene is ydaM [H]

Identifier: 93006796

GI number: 93006796

Start: 2432294

End: 2433814

Strand: Reverse

Name: ydaM [H]

Synonym: Pcryo_1972

Alternate gene names: 93006796

Gene position: 2433814-2432294 (Counterclockwise)

Preceding gene: 93006797

Following gene: 93006794

Centisome position: 79.54

GC content: 42.8

Gene sequence:

>1521_bases
ATGGCTTTTTCGATATCTCATCTAGGCTATAGAAAACTCTCTCGAGTTATTTTCGAGTGGCAGGCTGCTGATAGAGCATT
GCTGCTAGCATTGTTTGTGTTGATGGAAATTACCTTACATTGGATCTGGTGCTTGTATGTTTGGTTTCGTAGAGAGACCT
ATAGCTCCTATGTTGACATGGCGCTGTTGTATCCTTTATGGATTGGCATTACGCTGCTTGGACTCTTCTTTTTATGGATG
ATCAGTCGCTCATCGCCTATTAAAACCGGTCACGGCTCGCTACATACGTGGCAGGCGGTATTAATCACGCTTTATAGTAC
TTATATTGCAGTGGTTATTTTGGTAATGGGGCATAGCAGCTTGGTTGCTGGGGTGTCGCTGGTGGGCGGGGCGATGCTGG
GTATGATGCTTATACGGCGACGTTATGTATGGAAGGCTTTTTTGGCTCATAGTATGCTGATTTTTTCGGCTACATTAATT
CCCTATTTCGGCTTTACGATTCCCAACATGCAACAAATGACAGCGACTTCTTTTCCCTTGGATAGCTATAACTATTTGAC
CTATAGCGAGACCACGGCTATCGAAAATGCCATCTCTGCGTCCATATTTCAAAATGGGACGCTTAGCTGGGATACGTTTA
ATCAACTGCGTTTTTCTTCCGCGTTTTTTTGGCGCAGCACGCATATTTATATGTCGCTGCCAAAAGCGATTTTTATCATC
TATATGTTTCGCACGCTGCTGTTGATATTGGATAACAGTAAAGCGGAGATTATGCAGTACGCCAATCATGACGAATTGAC
CCAGCTGAAAAGTCGCCGTTATGGCTTAACGCAAATGCAGCAGGCGCTTTTGGCAATGGGAGATCAGCAGGACGTTAGTA
TTATATTATTAGACTTAGATTGGTTCAAAAACATTAATGACAATTATGGTCATGATGTTGGCGATCAAGTATTGTCAGAG
GTTGCACAAACCTTATTGAATTCATTGACAGAAGAGGCGATTGTGAGTCGATATGGTGGAGAAGAGTTTTTAATCGTGCT
CCCAGATACCTCGCATGATAGCGTCATGACGATTGCTAAACAGCTGCGACGAGATATTGCTGAGCAAGTCATCAGTGGCG
ACAACCATACAGATTTTAATGTCACGGCAAGTTTAGGGGTTTATACCTTGACGCATGCTGAGCGTATTCATATTCAAAGT
GAATATAGGGCTACTGAATTAGAAGAGAATATACAATCGCCAAATAATTCAAAAAAAGATAGTTCATCTGTTAAAGGGTT
GCAAAAAAGTAGCCCAATACAAAACAGCTCGCAACGAAGAATTGCCCACAGAAGAAAACGAGTCGCCACAGAAATCGCGA
AGGCGCAATTGCCCATCGACATTTGCCAGCGCTTGATTTGTATCGCTGATAAAGCACTATACGAAGCCAAGGATCGCGGA
CGTAATCAAGTCGTTAGTGCCAACGAGATACTAGCAGCAGAAAATAGCACGGTTATCTCATTTTATACCGCTAGCAAATA
A

Upstream 100 bases:

>100_bases
GCCACACTCAATGATAAGTTCAGATTTAGTATCAATCATGACACCGGATGGATTGCTCTGGTTTTAACTCAATCACTTTC
ATTGTTTTCGGTAGCCCATT

Downstream 100 bases:

>100_bases
ATCAGTACTTTAACCTTTTAGGTCCTTAACCGGTTATGACATAGATAATGTCTAGGTATTTAATTCTTGTACCAAACTTG
CTAATACGCTGGTCGCAAAG

Product: diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 506; Mature: 505

Protein sequence:

>506_residues
MAFSISHLGYRKLSRVIFEWQAADRALLLALFVLMEITLHWIWCLYVWFRRETYSSYVDMALLYPLWIGITLLGLFFLWM
ISRSSPIKTGHGSLHTWQAVLITLYSTYIAVVILVMGHSSLVAGVSLVGGAMLGMMLIRRRYVWKAFLAHSMLIFSATLI
PYFGFTIPNMQQMTATSFPLDSYNYLTYSETTAIENAISASIFQNGTLSWDTFNQLRFSSAFFWRSTHIYMSLPKAIFII
YMFRTLLLILDNSKAEIMQYANHDELTQLKSRRYGLTQMQQALLAMGDQQDVSIILLDLDWFKNINDNYGHDVGDQVLSE
VAQTLLNSLTEEAIVSRYGGEEFLIVLPDTSHDSVMTIAKQLRRDIAEQVISGDNHTDFNVTASLGVYTLTHAERIHIQS
EYRATELEENIQSPNNSKKDSSSVKGLQKSSPIQNSSQRRIAHRRKRVATEIAKAQLPIDICQRLICIADKALYEAKDRG
RNQVVSANEILAAENSTVISFYTASK

Sequences:

>Translated_506_residues
MAFSISHLGYRKLSRVIFEWQAADRALLLALFVLMEITLHWIWCLYVWFRRETYSSYVDMALLYPLWIGITLLGLFFLWM
ISRSSPIKTGHGSLHTWQAVLITLYSTYIAVVILVMGHSSLVAGVSLVGGAMLGMMLIRRRYVWKAFLAHSMLIFSATLI
PYFGFTIPNMQQMTATSFPLDSYNYLTYSETTAIENAISASIFQNGTLSWDTFNQLRFSSAFFWRSTHIYMSLPKAIFII
YMFRTLLLILDNSKAEIMQYANHDELTQLKSRRYGLTQMQQALLAMGDQQDVSIILLDLDWFKNINDNYGHDVGDQVLSE
VAQTLLNSLTEEAIVSRYGGEEFLIVLPDTSHDSVMTIAKQLRRDIAEQVISGDNHTDFNVTASLGVYTLTHAERIHIQS
EYRATELEENIQSPNNSKKDSSSVKGLQKSSPIQNSSQRRIAHRRKRVATEIAKAQLPIDICQRLICIADKALYEAKDRG
RNQVVSANEILAAENSTVISFYTASK
>Mature_505_residues
AFSISHLGYRKLSRVIFEWQAADRALLLALFVLMEITLHWIWCLYVWFRRETYSSYVDMALLYPLWIGITLLGLFFLWMI
SRSSPIKTGHGSLHTWQAVLITLYSTYIAVVILVMGHSSLVAGVSLVGGAMLGMMLIRRRYVWKAFLAHSMLIFSATLIP
YFGFTIPNMQQMTATSFPLDSYNYLTYSETTAIENAISASIFQNGTLSWDTFNQLRFSSAFFWRSTHIYMSLPKAIFIIY
MFRTLLLILDNSKAEIMQYANHDELTQLKSRRYGLTQMQQALLAMGDQQDVSIILLDLDWFKNINDNYGHDVGDQVLSEV
AQTLLNSLTEEAIVSRYGGEEFLIVLPDTSHDSVMTIAKQLRRDIAEQVISGDNHTDFNVTASLGVYTLTHAERIHIQSE
YRATELEENIQSPNNSKKDSSSVKGLQKSSPIQNSSQRRIAHRRKRVATEIAKAQLPIDICQRLICIADKALYEAKDRGR
NQVVSANEILAAENSTVISFYTASK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=125, Percent_Identity=40.8, Blast_Score=90, Evalue=4e-19,
Organism=Escherichia coli, GI1787802, Length=127, Percent_Identity=35.4330708661417, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI87082007, Length=126, Percent_Identity=37.3015873015873, Blast_Score=83, Evalue=5e-17,
Organism=Escherichia coli, GI145693134, Length=124, Percent_Identity=32.258064516129, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1787262, Length=226, Percent_Identity=26.1061946902655, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1787541, Length=102, Percent_Identity=34.3137254901961, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI1788381, Length=135, Percent_Identity=34.0740740740741, Blast_Score=70, Evalue=4e-13,
Organism=Escherichia coli, GI1786584, Length=142, Percent_Identity=26.7605633802817, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI1788085, Length=130, Percent_Identity=30, Blast_Score=66, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656 [H]

Pfam domain/function: PF00990 GGDEF; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 57583; Mature: 57452

Theoretical pI: Translated: 7.77; Mature: 7.77

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFSISHLGYRKLSRVIFEWQAADRALLLALFVLMEITLHWIWCLYVWFRRETYSSYVDM
CCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALLYPLWIGITLLGLFFLWMISRSSPIKTGHGSLHTWQAVLITLYSTYIAVVILVMGHSS
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHH
LVAGVSLVGGAMLGMMLIRRRYVWKAFLAHSMLIFSATLIPYFGFTIPNMQQMTATSFPL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCC
DSYNYLTYSETTAIENAISASIFQNGTLSWDTFNQLRFSSAFFWRSTHIYMSLPKAIFII
CCCCEEEECHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHEECCCCEEHHHHHHHHH
YMFRTLLLILDNSKAEIMQYANHDELTQLKSRRYGLTQMQQALLAMGDQQDVSIILLDLD
HHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCCEEEEEEEH
WFKNINDNYGHDVGDQVLSEVAQTLLNSLTEEAIVSRYGGEEFLIVLPDTSHDSVMTIAK
HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHH
QLRRDIAEQVISGDNHTDFNVTASLGVYTLTHAERIHIQSEYRATELEENIQSPNNSKKD
HHHHHHHHHHHCCCCCCCCEEEEECCEEEEECHHHEEEHHHHHHHHHHHHHCCCCCCCCC
SSSVKGLQKSSPIQNSSQRRIAHRRKRVATEIAKAQLPIDICQRLICIADKALYEAKDRG
HHHHCCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC
RNQVVSANEILAAENSTVISFYTASK
CCCEECHHHHEEECCCEEEEEEECCC
>Mature Secondary Structure 
AFSISHLGYRKLSRVIFEWQAADRALLLALFVLMEITLHWIWCLYVWFRRETYSSYVDM
CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALLYPLWIGITLLGLFFLWMISRSSPIKTGHGSLHTWQAVLITLYSTYIAVVILVMGHSS
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHH
LVAGVSLVGGAMLGMMLIRRRYVWKAFLAHSMLIFSATLIPYFGFTIPNMQQMTATSFPL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCC
DSYNYLTYSETTAIENAISASIFQNGTLSWDTFNQLRFSSAFFWRSTHIYMSLPKAIFII
CCCCEEEECHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHEECCCCEEHHHHHHHHH
YMFRTLLLILDNSKAEIMQYANHDELTQLKSRRYGLTQMQQALLAMGDQQDVSIILLDLD
HHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCCEEEEEEEH
WFKNINDNYGHDVGDQVLSEVAQTLLNSLTEEAIVSRYGGEEFLIVLPDTSHDSVMTIAK
HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHH
QLRRDIAEQVISGDNHTDFNVTASLGVYTLTHAERIHIQSEYRATELEENIQSPNNSKKD
HHHHHHHHHHHCCCCCCCCEEEEECCEEEEECHHHEEEHHHHHHHHHHHHHCCCCCCCCC
SSSVKGLQKSSPIQNSSQRRIAHRRKRVATEIAKAQLPIDICQRLICIADKALYEAKDRG
HHHHCCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC
RNQVVSANEILAAENSTVISFYTASK
CCCEECHHHHEEECCCEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]