Click here to switch to the map view.

The map label for this gene is ssb [H]

Identifier: 93006782

GI number: 93006782

Start: 2416686

End: 2417345

Strand: Reverse

Name: ssb [H]

Synonym: Pcryo_1958

Alternate gene names: 93006782

Gene position: 2417345-2416686 (Counterclockwise)

Preceding gene: 93006783

Following gene: 93006781

Centisome position: 79.0

GC content: 48.48

Gene sequence:

>660_bases
ATGCGCGGTGTTAATAAAGTTATCATCATCGGTAACCTCGGTGCAGACCCTGAGGCACGTCAATTCAATAACGGCGGTAG
CGTGACCAATATTTCGGTTGCGACATCAGAGCAGTGGACAGACAAGCAAAGCGGTGAGAAAAGAGAAGCAACGGAATGGC
ATCGCATTTCGTTGTTCAATCGCTTGGGCGAAATCGCTGCGCAGTATCTTCGTAAAGGCAGTAAGGTATATATCGAAGGC
AGCTTACGTACCCGTAAATATCAAGATCCCAACGGACAAGACCGTTATATCACTGAAATTCGTGCTGAACAAATGCAAAT
GCTAGATGGCTCGACAGGTGGTAGTAATGATGCTGGTGGTGGCTTTGGTAGCAATAACCAAGGTGGTCAAAGCAACCAAG
GTGGCTATGGTAATCAGGGCGGCGGATTTAGTAACCAAGGTGGCCAGAACGACTATGGTCAGCAAGGAGGCAATCAGCCC
GCTCAACAAGGCGGTTATAATCAAGGCGGCAGTGCGTCACAGGGTGGTCATCAAAATAGCTTTAATAATCAGAATGCGCC
CGCTCAGCAGAATCAATTTAATAAACCGACTCAAGCACCAGCGCAGTCGAAGCCTACAGCAATGCCAGATGGCCCTGTAG
ACGATGACATTCCGTTCTGA

Upstream 100 bases:

>100_bases
TGGTTAAAGTAAAAGTATATTACTGCTAAGATTGAGGCTTTATATTAAAGACTCGATTAAAGCTGGTAATAAAATTATTC
ATAAGTAAAAGGACGATATC

Downstream 100 bases:

>100_bases
GGATACAATAACAAGATGTTGTATTTATAAAGAAATAAACTTAGAGCCTTGCTAATGCAAGGCTTTTTAGTATGTACAGA
TAATGAAAGTGTAAGGAGTC

Product: single-strand binding protein

Products: NA

Alternate protein names: SSB; Helix-destabilizing protein [H]

Number of amino acids: Translated: 219; Mature: 219

Protein sequence:

>219_residues
MRGVNKVIIIGNLGADPEARQFNNGGSVTNISVATSEQWTDKQSGEKREATEWHRISLFNRLGEIAAQYLRKGSKVYIEG
SLRTRKYQDPNGQDRYITEIRAEQMQMLDGSTGGSNDAGGGFGSNNQGGQSNQGGYGNQGGGFSNQGGQNDYGQQGGNQP
AQQGGYNQGGSASQGGHQNSFNNQNAPAQQNQFNKPTQAPAQSKPTAMPDGPVDDDIPF

Sequences:

>Translated_219_residues
MRGVNKVIIIGNLGADPEARQFNNGGSVTNISVATSEQWTDKQSGEKREATEWHRISLFNRLGEIAAQYLRKGSKVYIEG
SLRTRKYQDPNGQDRYITEIRAEQMQMLDGSTGGSNDAGGGFGSNNQGGQSNQGGYGNQGGGFSNQGGQNDYGQQGGNQP
AQQGGYNQGGSASQGGHQNSFNNQNAPAQQNQFNKPTQAPAQSKPTAMPDGPVDDDIPF
>Mature_219_residues
MRGVNKVIIIGNLGADPEARQFNNGGSVTNISVATSEQWTDKQSGEKREATEWHRISLFNRLGEIAAQYLRKGSKVYIEG
SLRTRKYQDPNGQDRYITEIRAEQMQMLDGSTGGSNDAGGGFGSNNQGGQSNQGGYGNQGGGFSNQGGQNDYGQQGGNQP
AQQGGYNQGGSASQGGHQNSFNNQNAPAQQNQFNKPTQAPAQSKPTAMPDGPVDDDIPF

Specific function: This protein is essential for replication of the chromosome. It is also involved in DNA recombination and repair [H]

COG id: COG0629

COG function: function code L; Single-stranded DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SSB domain [H]

Homologues:

Organism=Homo sapiens, GI4507231, Length=117, Percent_Identity=37.6068376068376, Blast_Score=77, Evalue=1e-14,
Organism=Escherichia coli, GI1790494, Length=116, Percent_Identity=62.0689655172414, Blast_Score=154, Evalue=5e-39,

Paralogues:

None

Copy number: 1622 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 2,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR000424
- InterPro:   IPR011344 [H]

Pfam domain/function: PF00436 SSB [H]

EC number: NA

Molecular weight: Translated: 23332; Mature: 23332

Theoretical pI: Translated: 5.79; Mature: 5.79

Prosite motif: PS50935 SSB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRGVNKVIIIGNLGADPEARQFNNGGSVTNISVATSEQWTDKQSGEKREATEWHRISLFN
CCCCCEEEEEECCCCCCHHHHCCCCCCEEEEEEECCCHHCCHHCCCCHHHHHHHHHHHHH
RLGEIAAQYLRKGSKVYIEGSLRTRKYQDPNGQDRYITEIRAEQMQMLDGSTGGSNDAGG
HHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC
GFGSNNQGGQSNQGGYGNQGGGFSNQGGQNDYGQQGGNQPAQQGGYNQGGSASQGGHQNS
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCHHHCCCCCCCCCCCCCCCCC
FNNQNAPAQQNQFNKPTQAPAQSKPTAMPDGPVDDDIPF
CCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MRGVNKVIIIGNLGADPEARQFNNGGSVTNISVATSEQWTDKQSGEKREATEWHRISLFN
CCCCCEEEEEECCCCCCHHHHCCCCCCEEEEEEECCCHHCCHHCCCCHHHHHHHHHHHHH
RLGEIAAQYLRKGSKVYIEGSLRTRKYQDPNGQDRYITEIRAEQMQMLDGSTGGSNDAGG
HHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC
GFGSNNQGGQSNQGGYGNQGGGFSNQGGQNDYGQQGGNQPAQQGGYNQGGSASQGGHQNS
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCHHHCCCCCCCCCCCCCCCCC
FNNQNAPAQQNQFNKPTQAPAQSKPTAMPDGPVDDDIPF
CCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA