| Definition | Psychrobacter cryohalolentis K5 chromosome, complete genome. |
|---|---|
| Accession | NC_007969 |
| Length | 3,059,876 |
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The map label for this gene is glcB [H]
Identifier: 93006702
GI number: 93006702
Start: 2319428
End: 2321632
Strand: Reverse
Name: glcB [H]
Synonym: Pcryo_1878
Alternate gene names: 93006702
Gene position: 2321632-2319428 (Counterclockwise)
Preceding gene: 93006704
Following gene: 93006701
Centisome position: 75.87
GC content: 44.72
Gene sequence:
>2205_bases ATGAGCCAGTCTTCTAATGCCAATCGTGTTCAAAAAGGCATTCTTGCCATTGATCAGCAGCTGTTCGATTTTATCGAAAA TGAAGTGCTGCCGAAAGTCGGTATTGATTCAGACGGTTACTGGTCAGGTTTCGAAAAGGTCATCAAAGAGTTTACGCCAC GTAATAAAGCACTGCTTGCAACGCGTGCTAAGATTCAAGGACAGATTGACCAATGGCACCTGCAACATCCTACCAAAAAT GGCGACATTGATTATCCAGCGTACAAAGCATTTTTACAAGAAATTGGCTACCTATTACCAGAAGGCGAAGCGTTCAGTGT CAGCACAGAAAACGTCGATGATGAGATTGCCCGTATTGCAGGACCTCAGCTGGTAGTACCAGTACGTAATGCTCGCTATG CGTTGAACGCCAATAATGCGCGTTGGGGCAGCTTATATGATGCTTTATATGGCACCAATGTTATCAGTGATGAAAATGGT CAAGAAGCAAAAGGTGGCTACAATCCAACACGTGGCGCAGCCGTCGTCGCTTATGCCAAAAAATTCCTAGATGAAAATTT TGCCTTAGCATCAGGCTCCTATAGCGATGTAACAGGTTTTAGAGTCGTTGATGGTAAGCTTGAAATTGCGCAAGGCGATA GCAGCACGCAACTAAAAGATGCCGCACAGTTTGCAGGTTTCGTAGGCGACGCTGATAGTCCTAGCGCTGTGTTATTAAAG AACAATAACTTGCATGCTGAGATTCAAGTTGATGGCAATCATCCCATTGGCAAAGATGATCCTGCACATATCAAAGACGT GTTATTAGAGTCGGCGCTGACTGCGATACAAGATTGTGAAGACTCCATCGCTGCTGTTGATGCAGAAGAGAAGGTTGAAG CGTATCGCAATTGGTTTGGCTTGATGAATGGCGATTTGCAAGAAACCTTTGAGAAAGGCGGCAAGACCCGTACGCGTAAA CAGAATCCTGATCGCGAATATACTACGCCAGAGGGTGATACGCTGACCTTGCCAGGTCGCTCACTTTTATTGCTACGTAA CGTCGGACATCTCATGCAAAATCCATCGATTTTGGTAGATTTAGGCAATGGTCAAGAAGAGGTTTTCGAAGGTTTAATGG ATGGTTTGATTACGCCTTTATTATCATTGAATGATTTAAAAGGTAAAACCGAGCTATCAAACTCACGTAAAGGTTCAATG TATATTGTTAAACCAAAAATGCATGGTCCTGATGAGGTGAAGATGGCGAATGACTTATTTAACGCCTCAGAAGACCTACT GGGCTTAGAGCGTTATACGATAAAGATCGGCATTATGGATGAAGAACGCCGTATGACGGTCAACTTAAAAGAAGCCATTC GCCAAGCAAAAGAGCGTGTTATTTTCATCAATACCGGCTTCTTAGATCGCACAGGTGATGAGATGCACACCAGTATGAAT GCAGGTCCATTTGTCCGCAAAGGCGATATGAAGTCGCAAACGTGGCTGCCTGCTTATGAGCAATGGAACGTCGATATCGG TCTTGAAGTAGGCTTACAAGGTCACGCGCAGATTGGTAAAGGCATGTGGGCAAAACCTGATGAAATGCAAGAGATGATGG ACACCAAAATTGCCCATCCACAGGCAGGTGCTAATACGGCGTGGGTGCCATCTCCAACGGGTGCTACCTTACACAGCATG CACTATCATAAAGTCAATGTTGCTGAGGTTCAAGACAGCCTGAAATCACGTGCGCGCGCTAGCGTAGATGATATCTTAAC CATTCCATTGGCAAAAAACACCAATTGGACTGAAGAAGAAAAACAGCAAGAGATTGATAATAATGCTCAAGGTATCCTAG GCTATGTCGTACGTTGGGTAAACCAAGGCGTTGGTTGCTCTAAAGTACCTGACATCAATGACGTCGGCTTGATGGAAGAT CGTGCGACATTGCGTATCTCAAGTCAGCATATTGCCAATTGGTTACACCATAATGTTGTCAGCGAGCAGCAAGTGATGGA CGCTATGAAACGTATGGCTAAAATCGTCGATGAGCAAAACGCTGGTGATGCTGATTATCAACCAATGGCGACTGACTTGG ACAACTCCTATGCTTTCAAAGCCGCTTGTGATTTGGTATTTAAAGGTCGCGAGCAGCCAAGTGGTTATACTGAGCCATTA TTGCATCAAGCACGTCTAGATCTAAAAGCCAGTGTTGGCTGCTAA
Upstream 100 bases:
>100_bases ACTCTGCTTTATGCGCCCTTTTGCATGACTGTGTACATGGACGAGGTATGTTTTAGCAGCCCAGTATCAACAAATCTAAC AAACAGATAAGGATAACAGT
Downstream 100 bases:
>100_bases AAGTTAAAACAAGACTGAATTTAGCAATAAGCACCCTTTAAGCGAGGTCAGTGACTGCCAATAAAAGAGGTAAGTACCTG TCAAGTTTTAGCACTTTTAA
Product: malate synthase G
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 734; Mature: 733
Protein sequence:
>734_residues MSQSSNANRVQKGILAIDQQLFDFIENEVLPKVGIDSDGYWSGFEKVIKEFTPRNKALLATRAKIQGQIDQWHLQHPTKN GDIDYPAYKAFLQEIGYLLPEGEAFSVSTENVDDEIARIAGPQLVVPVRNARYALNANNARWGSLYDALYGTNVISDENG QEAKGGYNPTRGAAVVAYAKKFLDENFALASGSYSDVTGFRVVDGKLEIAQGDSSTQLKDAAQFAGFVGDADSPSAVLLK NNNLHAEIQVDGNHPIGKDDPAHIKDVLLESALTAIQDCEDSIAAVDAEEKVEAYRNWFGLMNGDLQETFEKGGKTRTRK QNPDREYTTPEGDTLTLPGRSLLLLRNVGHLMQNPSILVDLGNGQEEVFEGLMDGLITPLLSLNDLKGKTELSNSRKGSM YIVKPKMHGPDEVKMANDLFNASEDLLGLERYTIKIGIMDEERRMTVNLKEAIRQAKERVIFINTGFLDRTGDEMHTSMN AGPFVRKGDMKSQTWLPAYEQWNVDIGLEVGLQGHAQIGKGMWAKPDEMQEMMDTKIAHPQAGANTAWVPSPTGATLHSM HYHKVNVAEVQDSLKSRARASVDDILTIPLAKNTNWTEEEKQQEIDNNAQGILGYVVRWVNQGVGCSKVPDINDVGLMED RATLRISSQHIANWLHHNVVSEQQVMDAMKRMAKIVDEQNAGDADYQPMATDLDNSYAFKAACDLVFKGREQPSGYTEPL LHQARLDLKASVGC
Sequences:
>Translated_734_residues MSQSSNANRVQKGILAIDQQLFDFIENEVLPKVGIDSDGYWSGFEKVIKEFTPRNKALLATRAKIQGQIDQWHLQHPTKN GDIDYPAYKAFLQEIGYLLPEGEAFSVSTENVDDEIARIAGPQLVVPVRNARYALNANNARWGSLYDALYGTNVISDENG QEAKGGYNPTRGAAVVAYAKKFLDENFALASGSYSDVTGFRVVDGKLEIAQGDSSTQLKDAAQFAGFVGDADSPSAVLLK NNNLHAEIQVDGNHPIGKDDPAHIKDVLLESALTAIQDCEDSIAAVDAEEKVEAYRNWFGLMNGDLQETFEKGGKTRTRK QNPDREYTTPEGDTLTLPGRSLLLLRNVGHLMQNPSILVDLGNGQEEVFEGLMDGLITPLLSLNDLKGKTELSNSRKGSM YIVKPKMHGPDEVKMANDLFNASEDLLGLERYTIKIGIMDEERRMTVNLKEAIRQAKERVIFINTGFLDRTGDEMHTSMN AGPFVRKGDMKSQTWLPAYEQWNVDIGLEVGLQGHAQIGKGMWAKPDEMQEMMDTKIAHPQAGANTAWVPSPTGATLHSM HYHKVNVAEVQDSLKSRARASVDDILTIPLAKNTNWTEEEKQQEIDNNAQGILGYVVRWVNQGVGCSKVPDINDVGLMED RATLRISSQHIANWLHHNVVSEQQVMDAMKRMAKIVDEQNAGDADYQPMATDLDNSYAFKAACDLVFKGREQPSGYTEPL LHQARLDLKASVGC >Mature_733_residues SQSSNANRVQKGILAIDQQLFDFIENEVLPKVGIDSDGYWSGFEKVIKEFTPRNKALLATRAKIQGQIDQWHLQHPTKNG DIDYPAYKAFLQEIGYLLPEGEAFSVSTENVDDEIARIAGPQLVVPVRNARYALNANNARWGSLYDALYGTNVISDENGQ EAKGGYNPTRGAAVVAYAKKFLDENFALASGSYSDVTGFRVVDGKLEIAQGDSSTQLKDAAQFAGFVGDADSPSAVLLKN NNLHAEIQVDGNHPIGKDDPAHIKDVLLESALTAIQDCEDSIAAVDAEEKVEAYRNWFGLMNGDLQETFEKGGKTRTRKQ NPDREYTTPEGDTLTLPGRSLLLLRNVGHLMQNPSILVDLGNGQEEVFEGLMDGLITPLLSLNDLKGKTELSNSRKGSMY IVKPKMHGPDEVKMANDLFNASEDLLGLERYTIKIGIMDEERRMTVNLKEAIRQAKERVIFINTGFLDRTGDEMHTSMNA GPFVRKGDMKSQTWLPAYEQWNVDIGLEVGLQGHAQIGKGMWAKPDEMQEMMDTKIAHPQAGANTAWVPSPTGATLHSMH YHKVNVAEVQDSLKSRARASVDDILTIPLAKNTNWTEEEKQQEIDNNAQGILGYVVRWVNQGVGCSKVPDINDVGLMEDR ATLRISSQHIANWLHHNVVSEQQVMDAMKRMAKIVDEQNAGDADYQPMATDLDNSYAFKAACDLVFKGREQPSGYTEPLL HQARLDLKASVGC
Specific function: Accounts For Almost The Entire Malate-Synthesizing Activity In Cells Metabolizing Glyoxylate. [C]
COG id: COG2225
COG function: function code C; Malate synthase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the malate synthase family. GlcB subfamily [H]
Homologues:
Organism=Escherichia coli, GI1789348, Length=738, Percent_Identity=55.2845528455285, Blast_Score=823, Evalue=0.0, Organism=Caenorhabditis elegans, GI17561814, Length=272, Percent_Identity=26.8382352941176, Blast_Score=78, Evalue=1e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011076 - InterPro: IPR001465 - InterPro: IPR006253 [H]
Pfam domain/function: PF01274 Malate_synthase [H]
EC number: =2.3.3.9 [H]
Molecular weight: Translated: 81183; Mature: 81052
Theoretical pI: Translated: 4.84; Mature: 4.84
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSQSSNANRVQKGILAIDQQLFDFIENEVLPKVGIDSDGYWSGFEKVIKEFTPRNKALLA CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEE TRAKIQGQIDQWHLQHPTKNGDIDYPAYKAFLQEIGYLLPEGEAFSVSTENVDDEIARIA HHHHHHCCCHHEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHC GPQLVVPVRNARYALNANNARWGSLYDALYGTNVISDENGQEAKGGYNPTRGAAVVAYAK CCEEEEEECCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH KFLDENFALASGSYSDVTGFRVVDGKLEIAQGDSSTQLKDAAQFAGFVGDADSPSAVLLK HHHCCCCEECCCCCCCCCCEEEECCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCEEEEE NNNLHAEIQVDGNHPIGKDDPAHIKDVLLESALTAIQDCEDSIAAVDAEEKVEAYRNWFG CCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH LMNGDLQETFEKGGKTRTRKQNPDREYTTPEGDTLTLPGRSLLLLRNVGHLMQNPSILVD CCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHCCCCEEEE LGNGQEEVFEGLMDGLITPLLSLNDLKGKTELSNSRKGSMYIVKPKMHGPDEVKMANDLF CCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCEEEEECCCCCCHHHHHHHHHH NASEDLLGLERYTIKIGIMDEERRMTVNLKEAIRQAKERVIFINTGFLDRTGDEMHTSMN CCHHHHHCCEEEEEEEEEEECCCCEEECHHHHHHHHHCCEEEEECCCCCCCCHHHHHCCC AGPFVRKGDMKSQTWLPAYEQWNVDIGLEVGLQGHAQIGKGMWAKPDEMQEMMDTKIAHP CCCCEECCCCCCCCCCCCHHHCCCEEEEEECCCCCHHHCCCCCCCCHHHHHHHHHHCCCC QAGANTAWVPSPTGATLHSMHYHKVNVAEVQDSLKSRARASVDDILTIPLAKNTNWTEEE CCCCCCCCCCCCCCCHHHCCEECCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHH KQQEIDNNAQGILGYVVRWVNQGVGCSKVPDINDVGLMEDRATLRISSQHIANWLHHNVV HHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHC SEQQVMDAMKRMAKIVDEQNAGDADYQPMATDLDNSYAFKAACDLVFKGREQPSGYTEPL CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHH LHQARLDLKASVGC HHHHHCCCCCCCCC >Mature Secondary Structure SQSSNANRVQKGILAIDQQLFDFIENEVLPKVGIDSDGYWSGFEKVIKEFTPRNKALLA CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEE TRAKIQGQIDQWHLQHPTKNGDIDYPAYKAFLQEIGYLLPEGEAFSVSTENVDDEIARIA HHHHHHCCCHHEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHC GPQLVVPVRNARYALNANNARWGSLYDALYGTNVISDENGQEAKGGYNPTRGAAVVAYAK CCEEEEEECCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH KFLDENFALASGSYSDVTGFRVVDGKLEIAQGDSSTQLKDAAQFAGFVGDADSPSAVLLK HHHCCCCEECCCCCCCCCCEEEECCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCEEEEE NNNLHAEIQVDGNHPIGKDDPAHIKDVLLESALTAIQDCEDSIAAVDAEEKVEAYRNWFG CCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH LMNGDLQETFEKGGKTRTRKQNPDREYTTPEGDTLTLPGRSLLLLRNVGHLMQNPSILVD CCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHCCCCEEEE LGNGQEEVFEGLMDGLITPLLSLNDLKGKTELSNSRKGSMYIVKPKMHGPDEVKMANDLF CCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCEEEEECCCCCCHHHHHHHHHH NASEDLLGLERYTIKIGIMDEERRMTVNLKEAIRQAKERVIFINTGFLDRTGDEMHTSMN CCHHHHHCCEEEEEEEEEEECCCCEEECHHHHHHHHHCCEEEEECCCCCCCCHHHHHCCC AGPFVRKGDMKSQTWLPAYEQWNVDIGLEVGLQGHAQIGKGMWAKPDEMQEMMDTKIAHP CCCCEECCCCCCCCCCCCHHHCCCEEEEEECCCCCHHHCCCCCCCCHHHHHHHHHHCCCC QAGANTAWVPSPTGATLHSMHYHKVNVAEVQDSLKSRARASVDDILTIPLAKNTNWTEEE CCCCCCCCCCCCCCCHHHCCEECCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHH KQQEIDNNAQGILGYVVRWVNQGVGCSKVPDINDVGLMEDRATLRISSQHIANWLHHNVV HHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHC SEQQVMDAMKRMAKIVDEQNAGDADYQPMATDLDNSYAFKAACDLVFKGREQPSGYTEPL CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHH LHQARLDLKASVGC HHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA