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The map label for this gene is nahR [H]

Identifier: 93006683

GI number: 93006683

Start: 2294738

End: 2295727

Strand: Reverse

Name: nahR [H]

Synonym: Pcryo_1859

Alternate gene names: 93006683

Gene position: 2295727-2294738 (Counterclockwise)

Preceding gene: 93006686

Following gene: 93006682

Centisome position: 75.03

GC content: 45.76

Gene sequence:

>990_bases
ATGAATTTGCAGCGGGTTGATTTAAATTTATTGGTACATTTGGATGTTTTGTTGCGAGAAAAAAACGTAACGCGCGCCGC
TGAGCAGCTAGGCATTACTCAGCCGGCGATGAGTAATATTTTGCGCCGCTTGCGTAAGTTGTTTAACGACCCTTTATTGG
TGCGTTCATCAGAAGGGATGACACCGACCGAGCGCGCCCTTGAATTACAGCCTCGTATCCGTGAGATACTTGCCGATTTG
ACACAAGTGTTAGAGCCACGTACTGAGTTTCGTCCTTATAGCACCTCACGCGTTTTTCGTATTATGACCTCAGATTATGC
TGAGGCGACCTTGGTACCAAAATTGGTGAAAGCGCTACGCTCAGAGGCACCCAATGTCATTTTAGATTTCTTAACGCCAT
CGGATGTGTCTTATCGTGATATGGAGCAGGGGCGTGTAGATTTGGCAATCAACCGCTTTAACGAGATCCCGCAAAGCTTC
CATCAAGTGTTGGTATGGCGTGATACCTTTAGCTGCCTGTTATCCTCTGAAAGTCCTTATGCTCATCGCTTTAATCTCAA
AAACTATCTTAAAGCGCAGCACGTTTGGGTATCAAAAACTGGTATGGGCGTGGGCTTCGGTGTCAATCCAGAAAAATCTG
GTGGCTTAGGTTCTATCGATCAAGCGTTGCAGCGTTTAGGTCAAAAACGTCAAATCAGCGTCTTTACCCGTCACTATCAG
ATGCCTGCTATGCTGGCCGCAAACAAAGATTTGATTGCGACTTTGCCGACTCGTGTCGCAAAAATGCAGGCTAATAACGA
CAGCATTATTATGGAAGAGCCACCGTTTTTTATACCAGAATTTGAGCTAACGATGGCGTGGTCGCCGTTATTGCAGCATC
ATCCGGCGCATCGCTGGTTACGTCAGCTGATTATGCACGTAGCACGTCAAATCGTTAATGATGAAGAAAATCCACCACAA
GAAATCCCTGTGATCAATCACTTATTTTAG

Upstream 100 bases:

>100_bases
TATCCTTATATCATGCTGTTAGGGATGAATTGCAATAAATGATAGGATAGAAAATATCACGTTTATGATGGTATTTATTC
TAAGATAAAGAGACACATAT

Downstream 100 bases:

>100_bases
GTTGTTTATTGTACAACTGTATATGGTCTTCTAAAGCTCAATTATGTATAGTTAAAATATCTCAAAAACGCTACAGTGCT
GCTGGTATAAATTTTTTGCA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 329; Mature: 329

Protein sequence:

>329_residues
MNLQRVDLNLLVHLDVLLREKNVTRAAEQLGITQPAMSNILRRLRKLFNDPLLVRSSEGMTPTERALELQPRIREILADL
TQVLEPRTEFRPYSTSRVFRIMTSDYAEATLVPKLVKALRSEAPNVILDFLTPSDVSYRDMEQGRVDLAINRFNEIPQSF
HQVLVWRDTFSCLLSSESPYAHRFNLKNYLKAQHVWVSKTGMGVGFGVNPEKSGGLGSIDQALQRLGQKRQISVFTRHYQ
MPAMLAANKDLIATLPTRVAKMQANNDSIIMEEPPFFIPEFELTMAWSPLLQHHPAHRWLRQLIMHVARQIVNDEENPPQ
EIPVINHLF

Sequences:

>Translated_329_residues
MNLQRVDLNLLVHLDVLLREKNVTRAAEQLGITQPAMSNILRRLRKLFNDPLLVRSSEGMTPTERALELQPRIREILADL
TQVLEPRTEFRPYSTSRVFRIMTSDYAEATLVPKLVKALRSEAPNVILDFLTPSDVSYRDMEQGRVDLAINRFNEIPQSF
HQVLVWRDTFSCLLSSESPYAHRFNLKNYLKAQHVWVSKTGMGVGFGVNPEKSGGLGSIDQALQRLGQKRQISVFTRHYQ
MPAMLAANKDLIATLPTRVAKMQANNDSIIMEEPPFFIPEFELTMAWSPLLQHHPAHRWLRQLIMHVARQIVNDEENPPQ
EIPVINHLF
>Mature_329_residues
MNLQRVDLNLLVHLDVLLREKNVTRAAEQLGITQPAMSNILRRLRKLFNDPLLVRSSEGMTPTERALELQPRIREILADL
TQVLEPRTEFRPYSTSRVFRIMTSDYAEATLVPKLVKALRSEAPNVILDFLTPSDVSYRDMEQGRVDLAINRFNEIPQSF
HQVLVWRDTFSCLLSSESPYAHRFNLKNYLKAQHVWVSKTGMGVGFGVNPEKSGGLGSIDQALQRLGQKRQISVFTRHYQ
MPAMLAANKDLIATLPTRVAKMQANNDSIIMEEPPFFIPEFELTMAWSPLLQHHPAHRWLRQLIMHVARQIVNDEENPPQ
EIPVINHLF

Specific function: Regulates the expression of the naphthalene (nahA-F) and salicylate (nahG-M) metabolism genes [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081684, Length=128, Percent_Identity=39.84375, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI87081766, Length=261, Percent_Identity=24.904214559387, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1786820, Length=83, Percent_Identity=40.9638554216867, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1790147, Length=313, Percent_Identity=23.3226837060703, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: 825 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 37819; Mature: 37819

Theoretical pI: Translated: 9.35; Mature: 9.35

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLQRVDLNLLVHLDVLLREKNVTRAAEQLGITQPAMSNILRRLRKLFNDPLLVRSSEGM
CCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEECCCCC
TPTERALELQPRIREILADLTQVLEPRTEFRPYSTSRVFRIMTSDYAEATLVPKLVKALR
CHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
SEAPNVILDFLTPSDVSYRDMEQGRVDLAINRFNEIPQSFHQVLVWRDTFSCLLSSESPY
CCCCCEEEEECCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
AHRFNLKNYLKAQHVWVSKTGMGVGFGVNPEKSGGLGSIDQALQRLGQKRQISVFTRHYQ
CEECCHHHHHHHHHEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHC
MPAMLAANKDLIATLPTRVAKMQANNDSIIMEEPPFFIPEFELTMAWSPLLQHHPAHRWL
CCHHHHCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCHHHHH
RQLIMHVARQIVNDEENPPQEIPVINHLF
HHHHHHHHHHHHCCCCCCCCCCCCHHCCC
>Mature Secondary Structure
MNLQRVDLNLLVHLDVLLREKNVTRAAEQLGITQPAMSNILRRLRKLFNDPLLVRSSEGM
CCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEECCCCC
TPTERALELQPRIREILADLTQVLEPRTEFRPYSTSRVFRIMTSDYAEATLVPKLVKALR
CHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
SEAPNVILDFLTPSDVSYRDMEQGRVDLAINRFNEIPQSFHQVLVWRDTFSCLLSSESPY
CCCCCEEEEECCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
AHRFNLKNYLKAQHVWVSKTGMGVGFGVNPEKSGGLGSIDQALQRLGQKRQISVFTRHYQ
CEECCHHHHHHHHHEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHC
MPAMLAANKDLIATLPTRVAKMQANNDSIIMEEPPFFIPEFELTMAWSPLLQHHPAHRWL
CCHHHHCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCHHHHH
RQLIMHVARQIVNDEENPPQEIPVINHLF
HHHHHHHHHHHHCCCCCCCCCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2703465; 2848005 [H]