Click here to switch to the map view.

The map label for this gene is perM [C]

Identifier: 93006679

GI number: 93006679

Start: 2289530

End: 2290636

Strand: Reverse

Name: perM [C]

Synonym: Pcryo_1855

Alternate gene names: 93006679

Gene position: 2290636-2289530 (Counterclockwise)

Preceding gene: 93006682

Following gene: 93006678

Centisome position: 74.86

GC content: 41.46

Gene sequence:

>1107_bases
ATGACAAACCAATCAATAGACCCCTTTTTTCGACGCCTATTTATCGTCGTTGCTATTGTTGTGGCTATGGTTTTATTGTA
TTTAATGATGCCGGTCATTGTGCCGTTTGTCTTTGCTTTTGTATTGGCTTATTTGTTTAATCCATTGGTCAAACGCTTAT
CAAAATATATCAAACGTTGGATTGCCATTATTATTGTGTATTCGACGATTACGTTGAGTATGGTGCTACTACTCTGGTGG
TTGATACCGACATTGTGGCATCAGCTGCAAGCAGCATGGGATTATCTGCCACAGCTTTTAACTTGGTATAATGAAGTCGT
CCGTGAATGGTTTGCTAGTAATAGCCGTATTCGTCTACCAGAGCTTGAGTCTAAAGGCTTCTCTGAGACCTTGGTTGAAT
ACATGCAAACCAATTATAAGTTTGAAGATGCCGGTACCATGATGAGCCAAATACTGGCGTCTAGCATGAACTTTATCAAT
AATGCTGGGCTGATTGTACTGGTGCCGATTTTGACCTTTTATTTCTTATTTAATTGGGAGCAACGCTTACATACATGGAA
AATGGCGATACCTGCGCCATACTGTAAAAAAGTGATTCAAATTGCGCAAGAGTGTGACCGTGCGTTGATGGCTTTTATTA
AAGGTCAGCTATTGGTGATGGTCTTACTAGGTGCTATTTATGCTGTGCAATTGCAGCTTATTGGGCTTGAGCTTGGGCTG
ATTATTGGTATGGTTGCAGGTATTGCTAGCTTTGTACCGTATTTGGGCTTTGGGATTGGCTTCGTTGCCGCGATTATCGC
CTGTCTGTTTCAGTTTGGCCTAGATTGGACGTATTTATCCTTGATTGCTGGCGCATTCTTGATTGGACAAGCTGCCGAAG
GCTATATCTTGCAACCGCTACTATTGGGCGACAAAATTGGTCTATCGCCATTATGGGTAATATTTTCGGTACTGGCAGGT
GCAAGTTTGCTCGGTTTCGTTGGTATGCTGATTGCGCTGCCAGTGTCTGCTGTCTTGAACGTGTTATTCCGTCATTTTTA
TACTCATTATCAAACGACTGACTTTTATAAAGGTCGTAAGCAGTTGGCATTGTTTGAAAAAAAATAA

Upstream 100 bases:

>100_bases
ATAACTGTTTGCTATTGGAATGTTGTCGTTCAATAAGATCTATCATCAACTTTAAATCAAATCACTCTTTTAAATAAGCC
CATTCGTAGGACTAGCCTTC

Downstream 100 bases:

>100_bases
TGTTGTTGTATGTATAACTGCTATGAAGTCCTTCAGGTTACAGGACATATCATAGTCGTTTGCCTGCGTGATAAAATAGG
ATTGATTGGGTGTTATGAGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 368; Mature: 367

Protein sequence:

>368_residues
MTNQSIDPFFRRLFIVVAIVVAMVLLYLMMPVIVPFVFAFVLAYLFNPLVKRLSKYIKRWIAIIIVYSTITLSMVLLLWW
LIPTLWHQLQAAWDYLPQLLTWYNEVVREWFASNSRIRLPELESKGFSETLVEYMQTNYKFEDAGTMMSQILASSMNFIN
NAGLIVLVPILTFYFLFNWEQRLHTWKMAIPAPYCKKVIQIAQECDRALMAFIKGQLLVMVLLGAIYAVQLQLIGLELGL
IIGMVAGIASFVPYLGFGIGFVAAIIACLFQFGLDWTYLSLIAGAFLIGQAAEGYILQPLLLGDKIGLSPLWVIFSVLAG
ASLLGFVGMLIALPVSAVLNVLFRHFYTHYQTTDFYKGRKQLALFEKK

Sequences:

>Translated_368_residues
MTNQSIDPFFRRLFIVVAIVVAMVLLYLMMPVIVPFVFAFVLAYLFNPLVKRLSKYIKRWIAIIIVYSTITLSMVLLLWW
LIPTLWHQLQAAWDYLPQLLTWYNEVVREWFASNSRIRLPELESKGFSETLVEYMQTNYKFEDAGTMMSQILASSMNFIN
NAGLIVLVPILTFYFLFNWEQRLHTWKMAIPAPYCKKVIQIAQECDRALMAFIKGQLLVMVLLGAIYAVQLQLIGLELGL
IIGMVAGIASFVPYLGFGIGFVAAIIACLFQFGLDWTYLSLIAGAFLIGQAAEGYILQPLLLGDKIGLSPLWVIFSVLAG
ASLLGFVGMLIALPVSAVLNVLFRHFYTHYQTTDFYKGRKQLALFEKK
>Mature_367_residues
TNQSIDPFFRRLFIVVAIVVAMVLLYLMMPVIVPFVFAFVLAYLFNPLVKRLSKYIKRWIAIIIVYSTITLSMVLLLWWL
IPTLWHQLQAAWDYLPQLLTWYNEVVREWFASNSRIRLPELESKGFSETLVEYMQTNYKFEDAGTMMSQILASSMNFINN
AGLIVLVPILTFYFLFNWEQRLHTWKMAIPAPYCKKVIQIAQECDRALMAFIKGQLLVMVLLGAIYAVQLQLIGLELGLI
IGMVAGIASFVPYLGFGIGFVAAIIACLFQFGLDWTYLSLIAGAFLIGQAAEGYILQPLLLGDKIGLSPLWVIFSVLAGA
SLLGFVGMLIALPVSAVLNVLFRHFYTHYQTTDFYKGRKQLALFEKK

Specific function: Unknown

COG id: COG0628

COG function: function code R; Predicted permease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0118 (perM) family [H]

Homologues:

Organism=Escherichia coli, GI1788838, Length=340, Percent_Identity=26.7647058823529, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI87082271, Length=343, Percent_Identity=24.4897959183673, Blast_Score=61, Evalue=1e-10,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002549 [H]

Pfam domain/function: PF01594 UPF0118 [H]

EC number: NA

Molecular weight: Translated: 41866; Mature: 41735

Theoretical pI: Translated: 9.27; Mature: 9.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHCCC
>Mature Secondary Structure 
TNQSIDPFFRRLFIVVAIVVAMVLLYLMMPVIVPFVFAFVLAYLFNPLVKRLSKYIKRW
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IAIIIVYSTITLSMVLLLWWLIPTLWHQLQAAWDYLPQLLTWYNEVVREWFASNSRIRLP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECC
ELESKGFSETLVEYMQTNYKFEDAGTMMSQILASSMNFINNAGLIVLVPILTFYFLFNWE
CCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
QRLHTWKMAIPAPYCKKVIQIAQECDRALMAFIKGQLLVMVLLGAIYAVQLQLIGLELGL
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IIGMVAGIASFVPYLGFGIGFVAAIIACLFQFGLDWTYLSLIAGAFLIGQAAEGYILQPL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHH
LLGDKIGLSPLWVIFSVLAGASLLGFVGMLIALPVSAVLNVLFRHFYTHYQTTDFYKGRK
HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCHH
QLALFEKK
HHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9823893 [H]