Click here to switch to the map view.

The map label for this gene is dcd [H]

Identifier: 93006412

GI number: 93006412

Start: 1946646

End: 1947221

Strand: Reverse

Name: dcd [H]

Synonym: Pcryo_1588

Alternate gene names: 93006412

Gene position: 1947221-1946646 (Counterclockwise)

Preceding gene: 93006413

Following gene: 93006405

Centisome position: 63.64

GC content: 44.1

Gene sequence:

>576_bases
ATGTCTATCAAGTCTGACCGCTGGATTCGTAAAATGGCCGAAGAACATGGCATGATTGAGCCGTTTGAAGCCGGTCAAGT
ACGTTTTAATGATGCCGGTGAGCGTTTGGTCAGTTACGGTACCTCAAGCTATGGTTATGATGTACGCTGCGCGCCTGAAT
TTAAAGTTTTCACCAACGTACATTCAGTAATTGTGGACCCTAAAAACTTTGACGAGAAAAGCTTTATTGATGTCATCGGT
GACGAGTGTATTATTCCGCCTAATTCTTTTGCATTGGCTCGTACGATGGAATATTTCCGTATTCCACGCGATGTATTGAC
TATTTGTCTTGGTAAATCAACCTATGCCCGCTGCGGTATCATTGTCAATGTCACACCACTTGAGCCTGAGTGGGAAGGTC
ATGTGACTTTAGAGTTTAGTAATACCACCAATCTTCCTGCGCGTATCTATGCTGGCGAAGGCGTTGCGCAAATGCTATTT
TTCCAAAGTGATGCTGATGATGTCTGTGAGACGAGTTATAAAGATCGTGGTGGTAAATACCAAGGACAGCGCGGTGTTAC
CTTACCAAGAACCTAA

Upstream 100 bases:

>100_bases
TAGCCAAGCCTATAAATTGAGCGCTCAATTCCGTATAATCGTCGCTATCAAAATACCATTCATATTATAAGTTTTATTTT
ATATCTGCTAAGGAATAACA

Downstream 100 bases:

>100_bases
TCGTTTAAGGTTATAATCACTTTTGGGCTGACAACAAAAAAAGCTGAACATATTTAATATGCTCAGCTTTTTTATGCGAT
ATATTTTGTTATTTTAATAC

Product: deoxycytidine triphosphate deaminase

Products: NA

Alternate protein names: dCTP deaminase [H]

Number of amino acids: Translated: 191; Mature: 190

Protein sequence:

>191_residues
MSIKSDRWIRKMAEEHGMIEPFEAGQVRFNDAGERLVSYGTSSYGYDVRCAPEFKVFTNVHSVIVDPKNFDEKSFIDVIG
DECIIPPNSFALARTMEYFRIPRDVLTICLGKSTYARCGIIVNVTPLEPEWEGHVTLEFSNTTNLPARIYAGEGVAQMLF
FQSDADDVCETSYKDRGGKYQGQRGVTLPRT

Sequences:

>Translated_191_residues
MSIKSDRWIRKMAEEHGMIEPFEAGQVRFNDAGERLVSYGTSSYGYDVRCAPEFKVFTNVHSVIVDPKNFDEKSFIDVIG
DECIIPPNSFALARTMEYFRIPRDVLTICLGKSTYARCGIIVNVTPLEPEWEGHVTLEFSNTTNLPARIYAGEGVAQMLF
FQSDADDVCETSYKDRGGKYQGQRGVTLPRT
>Mature_190_residues
SIKSDRWIRKMAEEHGMIEPFEAGQVRFNDAGERLVSYGTSSYGYDVRCAPEFKVFTNVHSVIVDPKNFDEKSFIDVIGD
ECIIPPNSFALARTMEYFRIPRDVLTICLGKSTYARCGIIVNVTPLEPEWEGHVTLEFSNTTNLPARIYAGEGVAQMLFF
QSDADDVCETSYKDRGGKYQGQRGVTLPRT

Specific function: De novo synthesis of thymidylate. [C]

COG id: COG0717

COG function: function code F; Deoxycytidine deaminase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dCTP deaminase family [H]

Homologues:

Organism=Escherichia coli, GI1788379, Length=157, Percent_Identity=28.0254777070064, Blast_Score=65, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011962
- InterPro:   IPR008180 [H]

Pfam domain/function: PF00692 dUTPase [H]

EC number: =3.5.4.13 [H]

Molecular weight: Translated: 21555; Mature: 21423

Theoretical pI: Translated: 4.92; Mature: 4.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIKSDRWIRKMAEEHGMIEPFEAGQVRFNDAGERLVSYGTSSYGYDVRCAPEFKVFTNV
CCCCHHHHHHHHHHHCCCCCCCCCCEEEECCHHHHHHHCCCCCCCCEEEECCCCEEECCC
HSVIVDPKNFDEKSFIDVIGDECIIPPNSFALARTMEYFRIPRDVLTICLGKSTYARCGI
EEEEECCCCCCHHHHHHHHCCCEEECCCCHHHHHHHHHHHCCHHHHHHHCCCCCHHHCEE
IVNVTPLEPEWEGHVTLEFSNTTNLPARIYAGEGVAQMLFFQSDADDVCETSYKDRGGKY
EEEEECCCCCCCCEEEEEECCCCCCCEEEEECCCCEEHEEECCCCHHHHHHHHHCCCCCC
QGQRGVTLPRT
CCCCCCCCCCC
>Mature Secondary Structure 
SIKSDRWIRKMAEEHGMIEPFEAGQVRFNDAGERLVSYGTSSYGYDVRCAPEFKVFTNV
CCCHHHHHHHHHHHCCCCCCCCCCEEEECCHHHHHHHCCCCCCCCEEEECCCCEEECCC
HSVIVDPKNFDEKSFIDVIGDECIIPPNSFALARTMEYFRIPRDVLTICLGKSTYARCGI
EEEEECCCCCCHHHHHHHHCCCEEECCCCHHHHHHHHHHHCCHHHHHHHCCCCCHHHCEE
IVNVTPLEPEWEGHVTLEFSNTTNLPARIYAGEGVAQMLFFQSDADDVCETSYKDRGGKY
EEEEECCCCCCCCEEEEEECCCCCCCEEEEECCCCEEHEEECCCCHHHHHHHHHCCCCCC
QGQRGVTLPRT
CCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA