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The map label for this gene is kdsD [H]

Identifier: 93006318

GI number: 93006318

Start: 1834933

End: 1835925

Strand: Reverse

Name: kdsD [H]

Synonym: Pcryo_1492

Alternate gene names: 93006318

Gene position: 1835925-1834933 (Counterclockwise)

Preceding gene: 93006319

Following gene: 93006317

Centisome position: 60.0

GC content: 45.72

Gene sequence:

>993_bases
ATGAATAGTCCTGAACGCAATCTAACCCATGAGCAATTTATTAGTACCGCTATTGATGCCATCAATACTGAAAAGGCGGC
ACTAGCATTACTGACCGAGCAAATAGATGATAGATTCGCTCAGGCTTGTGACATCATTTTGGCATGTCAAGGCCGTGTGG
TTGTGACAGGAATGGGTAAGTCGGGATTGATTGGTCGTAAGATAGCGGCGACATTTGCGTCCACTGGTACGCCATCGTTC
TTTATGCATCCTGGTGAAGCAGGGCATGGTGACCTCGGAATGTTGGTCAAAGGGGATGTGTTGCTTGCCATCTCTAACTC
TGGCGAGTCAGATGAGATAAAAATGCTCTTGCCTGTGGTCAAGCACTTAAATATTCCGCTGATTAGTATCAGTCGAGATA
AACGAGGTATGCTGCCACATGCTGCGGATATTATCTTGACTCTTGGTAAGTCGCAAGAAGCTTGCCCGCTCAATCTTGCT
CCTACCTCAAGTACCACAGCAACTCTAGCACTCGGTGACGCATTGGCAGTTGCCTTAGTGCATGCCCGCAATTTTACCTC
AGAAGATTTTGCGTTATCGCATCCTGCAGGTGCATTGGGTCGTCAATTACTGACCCGCGTAGAAGATTTGATGCATACTA
AAACAGAGGACTTGCCACTCATCAATCAGCAAGCACCGTTACAAGAAGCATTATTTATCATGTCAGCTGGGCGATTGGGC
ATGACGGTGGTCACAGATGCTGAGAAAAAAGTAGTCGGTATATTTACCGATGGTGATTTAAGGCGAGGATTGGAAAAAGG
CATTGATTTGCAGACCCCGATGCGTGAGCTGATGGTAAGTAGCCCTCGTCGTATCAGTAAATCTATGCGAGCATCAGATG
CGCTTAGCGTGATGAATGAGAATGCTATCAGTCAATTGCTTATTATCGATGATGACCAGCGCCTAGAAGCCATTATTACA
GTACATGATTTACTACAAGCTGGTGTAAAATAA

Upstream 100 bases:

>100_bases
ATAAAATGTATAGTAAAATGATTCATCAAATTATAAGAATATACAGCCAAAAACATAGAGTCATTGCAAACAAAAAATTA
ATAAAATATAGAGCCACTGT

Downstream 100 bases:

>100_bases
GCGTTATATTAGAATATCTATTAATAAAAGAGATGACTGATGCAAGACTTAATCAAGAAAGCCGGACAAGTGAAGTTATT
GGTCATGGACGTTGATGGTA

Product: KpsF/GutQ family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 330; Mature: 330

Protein sequence:

>330_residues
MNSPERNLTHEQFISTAIDAINTEKAALALLTEQIDDRFAQACDIILACQGRVVVTGMGKSGLIGRKIAATFASTGTPSF
FMHPGEAGHGDLGMLVKGDVLLAISNSGESDEIKMLLPVVKHLNIPLISISRDKRGMLPHAADIILTLGKSQEACPLNLA
PTSSTTATLALGDALAVALVHARNFTSEDFALSHPAGALGRQLLTRVEDLMHTKTEDLPLINQQAPLQEALFIMSAGRLG
MTVVTDAEKKVVGIFTDGDLRRGLEKGIDLQTPMRELMVSSPRRISKSMRASDALSVMNENAISQLLIIDDDQRLEAIIT
VHDLLQAGVK

Sequences:

>Translated_330_residues
MNSPERNLTHEQFISTAIDAINTEKAALALLTEQIDDRFAQACDIILACQGRVVVTGMGKSGLIGRKIAATFASTGTPSF
FMHPGEAGHGDLGMLVKGDVLLAISNSGESDEIKMLLPVVKHLNIPLISISRDKRGMLPHAADIILTLGKSQEACPLNLA
PTSSTTATLALGDALAVALVHARNFTSEDFALSHPAGALGRQLLTRVEDLMHTKTEDLPLINQQAPLQEALFIMSAGRLG
MTVVTDAEKKVVGIFTDGDLRRGLEKGIDLQTPMRELMVSSPRRISKSMRASDALSVMNENAISQLLIIDDDQRLEAIIT
VHDLLQAGVK
>Mature_330_residues
MNSPERNLTHEQFISTAIDAINTEKAALALLTEQIDDRFAQACDIILACQGRVVVTGMGKSGLIGRKIAATFASTGTPSF
FMHPGEAGHGDLGMLVKGDVLLAISNSGESDEIKMLLPVVKHLNIPLISISRDKRGMLPHAADIILTLGKSQEACPLNLA
PTSSTTATLALGDALAVALVHARNFTSEDFALSHPAGALGRQLLTRVEDLMHTKTEDLPLINQQAPLQEALFIMSAGRLG
MTVVTDAEKKVVGIFTDGDLRRGLEKGIDLQTPMRELMVSSPRRISKSMRASDALSVMNENAISQLLIIDDDQRLEAIIT
VHDLLQAGVK

Specific function: Catalyzes the interconversion of D-arabinose 5-phosphate and D-ribulose 5-phosphate [H]

COG id: COG0794

COG function: function code M; Predicted sugar phosphate isomerase involved in capsule formation

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SIS domain [H]

Homologues:

Organism=Escherichia coli, GI1789588, Length=318, Percent_Identity=51.5723270440252, Blast_Score=314, Evalue=4e-87,
Organism=Escherichia coli, GI87082151, Length=299, Percent_Identity=45.1505016722408, Blast_Score=256, Evalue=1e-69,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000644
- InterPro:   IPR004800
- InterPro:   IPR001347 [H]

Pfam domain/function: PF00571 CBS; PF01380 SIS [H]

EC number: =5.3.1.13 [H]

Molecular weight: Translated: 35401; Mature: 35401

Theoretical pI: Translated: 5.83; Mature: 5.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSPERNLTHEQFISTAIDAINTEKAALALLTEQIDDRFAQACDIILACQGRVVVTGMGK
CCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCEEEEECCEEEEEECCC
SGLIGRKIAATFASTGTPSFFMHPGEAGHGDLGMLVKGDVLLAISNSGESDEIKMLLPVV
CCCCHHHHHHHHHCCCCCCEEECCCCCCCCCEEEEEECCEEEEECCCCCCCHHHHHHHHH
KHLNIPLISISRDKRGMLPHAADIILTLGKSQEACPLNLAPTSSTTATLALGDALAVALV
HHCCCCEEEECCCCCCCCCCHHEEEEEECCCCCCCCEEECCCCCCEEEEEHHHHHHHHHH
HARNFTSEDFALSHPAGALGRQLLTRVEDLMHTKTEDLPLINQQAPLQEALFIMSAGRLG
HHCCCCCCCCEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCC
MTVVTDAEKKVVGIFTDGDLRRGLEKGIDLQTPMRELMVSSPRRISKSMRASDALSVMNE
EEEEECCCCEEEEEEECCHHHHHHHHCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHH
NAISQLLIIDDDQRLEAIITVHDLLQAGVK
HHHEEEEEECCCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNSPERNLTHEQFISTAIDAINTEKAALALLTEQIDDRFAQACDIILACQGRVVVTGMGK
CCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCEEEEECCEEEEEECCC
SGLIGRKIAATFASTGTPSFFMHPGEAGHGDLGMLVKGDVLLAISNSGESDEIKMLLPVV
CCCCHHHHHHHHHCCCCCCEEECCCCCCCCCEEEEEECCEEEEECCCCCCCHHHHHHHHH
KHLNIPLISISRDKRGMLPHAADIILTLGKSQEACPLNLAPTSSTTATLALGDALAVALV
HHCCCCEEEECCCCCCCCCCHHEEEEEECCCCCCCCEEECCCCCCEEEEEHHHHHHHHHH
HARNFTSEDFALSHPAGALGRQLLTRVEDLMHTKTEDLPLINQQAPLQEALFIMSAGRLG
HHCCCCCCCCEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCC
MTVVTDAEKKVVGIFTDGDLRRGLEKGIDLQTPMRELMVSSPRRISKSMRASDALSVMNE
EEEEECCCCEEEEEEECCHHHHHHHHCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHH
NAISQLLIIDDDQRLEAIITVHDLLQAGVK
HHHEEEEEECCCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11586360; 12142430 [H]