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The map label for this gene is ydcR [H]

Identifier: 93006203

GI number: 93006203

Start: 1684386

End: 1685810

Strand: Direct

Name: ydcR [H]

Synonym: Pcryo_1377

Alternate gene names: 93006203

Gene position: 1684386-1685810 (Clockwise)

Preceding gene: 93006197

Following gene: 93006208

Centisome position: 55.05

GC content: 47.58

Gene sequence:

>1425_bases
ATGGTCGAAACCTATACGCTCAATCCAAATTTAACCAAGACTGCCGCCGTCGCTGAATGGTTACAGCAGCGTATTGACTG
GCAGATTTACCTGCCCAATCAGCGTGTGCCCTCGGTGCGAAAGTTAGCGAAACTATTAAATATATCAAGCTTTACGGTGG
TACAAGCTTATGAGCAATTGGTAGCTACCAGTGTGCTAATCGCTAAGCCCAGCTCGGGCTACTATGTCAATACGCAAGCA
AAAGTAGTTCAGCCAAATAATGATAAAAGAGTGGTCGTTAAGCACCCAAAGCACCCAGTAATAGACACGCGCTGGCTGGT
ACAGCAGGTCTTTAATGATATTCCGCATCATCGCTCGCCAGGGGTGGGAACATTACCGAGAGACTGGATACGTAATGATA
AGATGGAATGGGCCATACGGCAGGTCACTCAGCAAGCCGATAGCTTTATCTATGATTATGGCAATGTTCACGGCTATCTG
CCGCTACGTCAGCAGCTGGTTCAACACCTACATACGCTAGGCATGCAAACTAATGCTGACCATGTGATTACTACCGCAGG
AGTGTCGCAAGCCGTGACCATGGTGGCGCGGCTGCTTACTCAAGCTGGGGATACGGTGGTCGTTGATGGGCCGGGCTGGT
ATTGGCTATCAAGCTGTCTGCAACAACAAGGATTAAACGTCGTCTCTGTAGAACGTGACCATCAAGGGCCTAATATTGAG
CAGATGCAAAAGCTGTTTGCGACGCATCGTCCCAAGCTCTATTTGACCAATAGCGTGCTGCATAATCCGACCTCTTGTAA
CCTGCATCCTGCTCGCGCGCACCAAGTACTCAATCTTATTCATGAGTACGATGCTTATATTTTTGAGGACGATTTATACG
CTGCATTCGTACCGGGTGGTCAAGTGCTGCGTTATGCTAGCCTTGATCAGTTTGAACGGGTGTTTTATGCGACTGGGTTT
TCAAAGTCAATGGCGTCAGGCTGGCGCGTTGGCATGTTGGTCTGTCCTGATAACTATATCGATGATGTATTACGTATGAA
AACCTTGAGTAATTCAAACACACCAGAATTTGGTGAACGGGTTTGTCATCATTTATGGACGCATGGTGAGTATCGCCGGC
AGATTAAAAAAGTGCAGCAGCATTTATATAGCGCTCATGAAAGAATGCGCCAAGTATTACCAAGGATAGGACTTATCTAC
CCTGAGCATACACAAGCAGGTCTCTTTGTTTGGGTAGACACGGGGCAGGATACCAGCCAGCTGGCACTAGATGCCTATAA
AGCAGGCTGGCTGGTCGCACCGGGGCAATTATTTTATCCCGATGCCCGCACCTCAACCCATCTGCGCCTAAATGTATCAA
CAACAAGCGATGAGTTTTTGCAGTGGTTAGGTGATTATTTGCATAAATGCGGTCAATACGGATAA

Upstream 100 bases:

>100_bases
CATAACAGACCCGATACAGTTTTACTAATGGCGAACAAAGTGTATAGTTACTCTTAACGTTACAATTAATCATGACATTG
AAGAGATAAGCACATTCATT

Downstream 100 bases:

>100_bases
AAATGCTATCACCCCACCACCAGTCGCATCATCTGCGTACTGATATAACCGCCAAAAGTGCCCACAGCATAACCTAAAAT
ACCCAAAAACACGCCAACCG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 474; Mature: 474

Protein sequence:

>474_residues
MVETYTLNPNLTKTAAVAEWLQQRIDWQIYLPNQRVPSVRKLAKLLNISSFTVVQAYEQLVATSVLIAKPSSGYYVNTQA
KVVQPNNDKRVVVKHPKHPVIDTRWLVQQVFNDIPHHRSPGVGTLPRDWIRNDKMEWAIRQVTQQADSFIYDYGNVHGYL
PLRQQLVQHLHTLGMQTNADHVITTAGVSQAVTMVARLLTQAGDTVVVDGPGWYWLSSCLQQQGLNVVSVERDHQGPNIE
QMQKLFATHRPKLYLTNSVLHNPTSCNLHPARAHQVLNLIHEYDAYIFEDDLYAAFVPGGQVLRYASLDQFERVFYATGF
SKSMASGWRVGMLVCPDNYIDDVLRMKTLSNSNTPEFGERVCHHLWTHGEYRRQIKKVQQHLYSAHERMRQVLPRIGLIY
PEHTQAGLFVWVDTGQDTSQLALDAYKAGWLVAPGQLFYPDARTSTHLRLNVSTTSDEFLQWLGDYLHKCGQYG

Sequences:

>Translated_474_residues
MVETYTLNPNLTKTAAVAEWLQQRIDWQIYLPNQRVPSVRKLAKLLNISSFTVVQAYEQLVATSVLIAKPSSGYYVNTQA
KVVQPNNDKRVVVKHPKHPVIDTRWLVQQVFNDIPHHRSPGVGTLPRDWIRNDKMEWAIRQVTQQADSFIYDYGNVHGYL
PLRQQLVQHLHTLGMQTNADHVITTAGVSQAVTMVARLLTQAGDTVVVDGPGWYWLSSCLQQQGLNVVSVERDHQGPNIE
QMQKLFATHRPKLYLTNSVLHNPTSCNLHPARAHQVLNLIHEYDAYIFEDDLYAAFVPGGQVLRYASLDQFERVFYATGF
SKSMASGWRVGMLVCPDNYIDDVLRMKTLSNSNTPEFGERVCHHLWTHGEYRRQIKKVQQHLYSAHERMRQVLPRIGLIY
PEHTQAGLFVWVDTGQDTSQLALDAYKAGWLVAPGQLFYPDARTSTHLRLNVSTTSDEFLQWLGDYLHKCGQYG
>Mature_474_residues
MVETYTLNPNLTKTAAVAEWLQQRIDWQIYLPNQRVPSVRKLAKLLNISSFTVVQAYEQLVATSVLIAKPSSGYYVNTQA
KVVQPNNDKRVVVKHPKHPVIDTRWLVQQVFNDIPHHRSPGVGTLPRDWIRNDKMEWAIRQVTQQADSFIYDYGNVHGYL
PLRQQLVQHLHTLGMQTNADHVITTAGVSQAVTMVARLLTQAGDTVVVDGPGWYWLSSCLQQQGLNVVSVERDHQGPNIE
QMQKLFATHRPKLYLTNSVLHNPTSCNLHPARAHQVLNLIHEYDAYIFEDDLYAAFVPGGQVLRYASLDQFERVFYATGF
SKSMASGWRVGMLVCPDNYIDDVLRMKTLSNSNTPEFGERVCHHLWTHGEYRRQIKKVQQHLYSAHERMRQVLPRIGLIY
PEHTQAGLFVWVDTGQDTSQLALDAYKAGWLVAPGQLFYPDARTSTHLRLNVSTTSDEFLQWLGDYLHKCGQYG

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=298, Percent_Identity=25.503355704698, Blast_Score=91, Evalue=2e-18,
Organism=Homo sapiens, GI33469970, Length=298, Percent_Identity=25.503355704698, Blast_Score=91, Evalue=2e-18,
Organism=Escherichia coli, GI1787710, Length=462, Percent_Identity=25.1082251082251, Blast_Score=138, Evalue=6e-34,
Organism=Escherichia coli, GI1790797, Length=482, Percent_Identity=26.1410788381743, Blast_Score=132, Evalue=4e-32,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 54156; Mature: 54156

Theoretical pI: Translated: 8.43; Mature: 8.43

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVETYTLNPNLTKTAAVAEWLQQRIDWQIYLPNQRVPSVRKLAKLLNISSFTVVQAYEQL
CCEEEECCCCCHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHHH
VATSVLIAKPSSGYYVNTQAKVVQPNNDKRVVVKHPKHPVIDTRWLVQQVFNDIPHHRSP
HHHHHEEECCCCCEEECCEEEEECCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCC
GVGTLPRDWIRNDKMEWAIRQVTQQADSFIYDYGNVHGYLPLRQQLVQHLHTLGMQTNAD
CCCCCCHHHHCCCHHHHHHHHHHHHHHHHEECCCCCEEEHHHHHHHHHHHHHHCCCCCCC
HVITTAGVSQAVTMVARLLTQAGDTVVVDGPGWYWLSSCLQQQGLNVVSVERDHQGPNIE
CEEEECCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCHH
QMQKLFATHRPKLYLTNSVLHNPTSCNLHPARAHQVLNLIHEYDAYIFEDDLYAAFVPGG
HHHHHHHHCCCCEEEEHHHHCCCCCCCCCHHHHHHHHHHHHHHCCEEEECCCEEEECCCC
QVLRYASLDQFERVFYATGFSKSMASGWRVGMLVCPDNYIDDVLRMKTLSNSNTPEFGER
CEEEHHHHHHHHHHHHHCCCCHHHCCCCEEEEEECCCHHHHHHHHHHHHCCCCCHHHHHH
VCHHLWTHGEYRRQIKKVQQHLYSAHERMRQVLPRIGLIYPEHTQAGLFVWVDTGQDTSQ
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCHHH
LALDAYKAGWLVAPGQLFYPDARTSTHLRLNVSTTSDEFLQWLGDYLHKCGQYG
HHHHHHHCCCEECCCCEECCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MVETYTLNPNLTKTAAVAEWLQQRIDWQIYLPNQRVPSVRKLAKLLNISSFTVVQAYEQL
CCEEEECCCCCHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHHH
VATSVLIAKPSSGYYVNTQAKVVQPNNDKRVVVKHPKHPVIDTRWLVQQVFNDIPHHRSP
HHHHHEEECCCCCEEECCEEEEECCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCC
GVGTLPRDWIRNDKMEWAIRQVTQQADSFIYDYGNVHGYLPLRQQLVQHLHTLGMQTNAD
CCCCCCHHHHCCCHHHHHHHHHHHHHHHHEECCCCCEEEHHHHHHHHHHHHHHCCCCCCC
HVITTAGVSQAVTMVARLLTQAGDTVVVDGPGWYWLSSCLQQQGLNVVSVERDHQGPNIE
CEEEECCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCHH
QMQKLFATHRPKLYLTNSVLHNPTSCNLHPARAHQVLNLIHEYDAYIFEDDLYAAFVPGG
HHHHHHHHCCCCEEEEHHHHCCCCCCCCCHHHHHHHHHHHHHHCCEEEECCCEEEECCCC
QVLRYASLDQFERVFYATGFSKSMASGWRVGMLVCPDNYIDDVLRMKTLSNSNTPEFGER
CEEEHHHHHHHHHHHHHCCCCHHHCCCCEEEEEECCCHHHHHHHHHHHHCCCCCHHHHHH
VCHHLWTHGEYRRQIKKVQQHLYSAHERMRQVLPRIGLIYPEHTQAGLFVWVDTGQDTSQ
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCHHH
LALDAYKAGWLVAPGQLFYPDARTSTHLRLNVSTTSDEFLQWLGDYLHKCGQYG
HHHHHHHCCCEECCCCEECCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]