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The map label for this gene is ccmF [H]

Identifier: 93006176

GI number: 93006176

Start: 1649536

End: 1651584

Strand: Direct

Name: ccmF [H]

Synonym: Pcryo_1348

Alternate gene names: 93006176

Gene position: 1649536-1651584 (Clockwise)

Preceding gene: 93006175

Following gene: 93006177

Centisome position: 53.91

GC content: 45.53

Gene sequence:

>2049_bases
ATGTTGATTACAGAATTGGGCTATTTTGCCTTGCTTACCGCTTTTGTATTGGCGTTATTGCAGGTAATTCTGCCAACTAT
TGGTGTTATTCGTAACCAAGTTGCTTGGCAACGACTAGCCCCTAGCTTAGCTTGGGCACAGTTTGCCGCCATGATAACGT
CATTTGGCGCTTTGATAGCAGGTTTTTATTATAATGATTTTAGCCTCAGTTACGTCGCGCAGCATTCCAATACGCTGTTG
CCTTGGTACTATAAGTTATCGGCGACATGGGGCGGACACGAGGGCTCTTTGCTGCTATGGATGACCATCATGGCCACATG
GTGTGCACTGGTATCATACTTTAGTCGCGGCTTGCCGTTATCAATGCGTGCGCGGGTATTAGTTATTTTGGCCGGTGTAC
AGTTAATGATGCTAACAATGCTGATATTTACCTCGTCACCGTTTGAGCGTACCTTACCCAATCTAGCGGTCGATGGCGCT
GATTTAAATCCTGTCCTACAAGATTTCGGTCTGATTATTCATCCGCCCATGTTATATATGGGCTATGTGGGTATGGTAGT
GCCTTTTGCATTTTGTATGGCGGCATTGTGGGAAGGGCGTTTAGATGCTGCTTGGACACGCTGGTCACGTCCATGGGCGC
TCGCGGCTTGGGGATTTTTGACCATTGGTATTGCACTGGGCTCGTGGTGGGCCTACTACGAGCTTGGCTGGGGCGGTTGG
TGGTTTTGGGATCCGGTAGAGAACGCCTCGTTTATGCCTTGGCTTGTCGGCTTAGCATTGCTGCATTCATTAGCAGTCAC
TGAAAAGCGCGGGGTGTTTAAAGCATGGACCATCATGCTGGCTATTTTCGCCTTTGCCTTAAGCTTGCTTGGCACGTTCC
TGGTACGCTCTGGAGTCCTTACCTCAGTGCATTCGTTTGCCGCTGATCCGACGCGTGGTTTGGTCATCTTAGCTATTCTT
GGCATTATCATCGGTAGTGGTCTATTAATGTTTGCCGTTCGCGGTTGGCGTTTAACCGTTGAAAGTCAATATCAGCTGAT
TTCACGTGAGTCCTTTTTAGTGATCAATAACGCCATCATTTTGATTGCAACCTTAGTGGTGCTGCTCGGCACCCTCTATC
CTATTATCGCTGATGCCTTTGGTTTAGGACAAGTGTCCGTTGGCCCTCCTTATTTTAATGCATTATTTGTACCTTTAACG
TGGCTGTTATTAATAGCTATGGGTATGGGCTCAAATATTCGCTGGAAAAAAGACACCCGTCCACTACTGGGTATAGGCAT
GGTCATCGCCGTTAGTAGCTTAGTATTAGCCGCCATTATTACTTACTTTGTTAATCCATCGTCTATGCTTAATATTGGTG
TGACTTTAGCCGTTAGCTTTTGGGTACTGCTATGGATGGCAGTTGATTTTAAAGATAAAACTAAGAATGCGCCTAATTTT
TTTAACGGTTTGCGGCAGTTGCGTCTGAGCTATTGGGGTCAACAGACTGCTCATATTGGCGTATTGGTTGCTGTCATTGG
CATAGCCTTTACTAGTAGCTTGAGTATTGAGCGTGACGTAGCAATGGGTATTGGCGATACAGTCAATGTTCAAGGTTACG
ATTTTGAAGTAACTGAATTTTTTGAAATAAAGGGTAGTAACTTTGATGCAACGCAGGCGCAAGTCGTGGTATCCAAAAAC
GGTCGTGAAGTGGCGAAACTGAATCCAGAAAAGCGTACTTATATCATTAGCACTATGCCGACCACTGAGGCGGCCATTGA
TGCTAGCCTAATGCGCGATGTTTATGTCGCACTGGGCGAACCTATTGCCGATGGTAGTAACCAATGGGCATTAAGGATTT
ATGTAAAACCATTAATTCGCTGGATTTGGTTAGGGGCAATTATCATGGCTCTAGGTGGATTAATTAGCATGCTTGATAAA
CGATACCGCATCAAAAAAGTTAAAGCTCCATTGCTAGTTACTGGTGATCTGGCTACTGATGGAGTCAATGAGGTAGCTAT
TGAGCAGGCAATCTCAGCATCGACGATGTCGACACTAAAGGAGAAATAA

Upstream 100 bases:

>100_bases
AACTAGAGATAGCAGCAGATTTCGGGGGTGGGTTCTAATAATAAAAATTCCACCGCTACAGTAAACTGCAACCGCATTAG
AGTAAATAAGGTTAGACCGT

Downstream 100 bases:

>100_bases
ATGACTATGTCGAATAATACTCCTGAGCAAAAAGATAGCCAAAACAGTAAGCAGCGTAACCCAAAGACAATGAAAAAAAA
GCAGACGAAGCTATGGTTCT

Product: cytochrome c-type biogenesis protein CcmF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 682; Mature: 682

Protein sequence:

>682_residues
MLITELGYFALLTAFVLALLQVILPTIGVIRNQVAWQRLAPSLAWAQFAAMITSFGALIAGFYYNDFSLSYVAQHSNTLL
PWYYKLSATWGGHEGSLLLWMTIMATWCALVSYFSRGLPLSMRARVLVILAGVQLMMLTMLIFTSSPFERTLPNLAVDGA
DLNPVLQDFGLIIHPPMLYMGYVGMVVPFAFCMAALWEGRLDAAWTRWSRPWALAAWGFLTIGIALGSWWAYYELGWGGW
WFWDPVENASFMPWLVGLALLHSLAVTEKRGVFKAWTIMLAIFAFALSLLGTFLVRSGVLTSVHSFAADPTRGLVILAIL
GIIIGSGLLMFAVRGWRLTVESQYQLISRESFLVINNAIILIATLVVLLGTLYPIIADAFGLGQVSVGPPYFNALFVPLT
WLLLIAMGMGSNIRWKKDTRPLLGIGMVIAVSSLVLAAIITYFVNPSSMLNIGVTLAVSFWVLLWMAVDFKDKTKNAPNF
FNGLRQLRLSYWGQQTAHIGVLVAVIGIAFTSSLSIERDVAMGIGDTVNVQGYDFEVTEFFEIKGSNFDATQAQVVVSKN
GREVAKLNPEKRTYIISTMPTTEAAIDASLMRDVYVALGEPIADGSNQWALRIYVKPLIRWIWLGAIIMALGGLISMLDK
RYRIKKVKAPLLVTGDLATDGVNEVAIEQAISASTMSTLKEK

Sequences:

>Translated_682_residues
MLITELGYFALLTAFVLALLQVILPTIGVIRNQVAWQRLAPSLAWAQFAAMITSFGALIAGFYYNDFSLSYVAQHSNTLL
PWYYKLSATWGGHEGSLLLWMTIMATWCALVSYFSRGLPLSMRARVLVILAGVQLMMLTMLIFTSSPFERTLPNLAVDGA
DLNPVLQDFGLIIHPPMLYMGYVGMVVPFAFCMAALWEGRLDAAWTRWSRPWALAAWGFLTIGIALGSWWAYYELGWGGW
WFWDPVENASFMPWLVGLALLHSLAVTEKRGVFKAWTIMLAIFAFALSLLGTFLVRSGVLTSVHSFAADPTRGLVILAIL
GIIIGSGLLMFAVRGWRLTVESQYQLISRESFLVINNAIILIATLVVLLGTLYPIIADAFGLGQVSVGPPYFNALFVPLT
WLLLIAMGMGSNIRWKKDTRPLLGIGMVIAVSSLVLAAIITYFVNPSSMLNIGVTLAVSFWVLLWMAVDFKDKTKNAPNF
FNGLRQLRLSYWGQQTAHIGVLVAVIGIAFTSSLSIERDVAMGIGDTVNVQGYDFEVTEFFEIKGSNFDATQAQVVVSKN
GREVAKLNPEKRTYIISTMPTTEAAIDASLMRDVYVALGEPIADGSNQWALRIYVKPLIRWIWLGAIIMALGGLISMLDK
RYRIKKVKAPLLVTGDLATDGVNEVAIEQAISASTMSTLKEK
>Mature_682_residues
MLITELGYFALLTAFVLALLQVILPTIGVIRNQVAWQRLAPSLAWAQFAAMITSFGALIAGFYYNDFSLSYVAQHSNTLL
PWYYKLSATWGGHEGSLLLWMTIMATWCALVSYFSRGLPLSMRARVLVILAGVQLMMLTMLIFTSSPFERTLPNLAVDGA
DLNPVLQDFGLIIHPPMLYMGYVGMVVPFAFCMAALWEGRLDAAWTRWSRPWALAAWGFLTIGIALGSWWAYYELGWGGW
WFWDPVENASFMPWLVGLALLHSLAVTEKRGVFKAWTIMLAIFAFALSLLGTFLVRSGVLTSVHSFAADPTRGLVILAIL
GIIIGSGLLMFAVRGWRLTVESQYQLISRESFLVINNAIILIATLVVLLGTLYPIIADAFGLGQVSVGPPYFNALFVPLT
WLLLIAMGMGSNIRWKKDTRPLLGIGMVIAVSSLVLAAIITYFVNPSSMLNIGVTLAVSFWVLLWMAVDFKDKTKNAPNF
FNGLRQLRLSYWGQQTAHIGVLVAVIGIAFTSSLSIERDVAMGIGDTVNVQGYDFEVTEFFEIKGSNFDATQAQVVVSKN
GREVAKLNPEKRTYIISTMPTTEAAIDASLMRDVYVALGEPIADGSNQWALRIYVKPLIRWIWLGAIIMALGGLISMLDK
RYRIKKVKAPLLVTGDLATDGVNEVAIEQAISASTMSTLKEK

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG1138

COG function: function code O; Cytochrome c biogenesis factor

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccmF/cycK/ccl1/nrfE/ccsA family [H]

Homologues:

Organism=Escherichia coli, GI1788524, Length=648, Percent_Identity=47.0679012345679, Blast_Score=569, Evalue=1e-163,
Organism=Escherichia coli, GI1790511, Length=371, Percent_Identity=45.0134770889488, Blast_Score=285, Evalue=8e-78,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541
- InterPro:   IPR003567
- InterPro:   IPR003568 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 75289; Mature: 75289

Theoretical pI: Translated: 9.16; Mature: 9.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLITELGYFALLTAFVLALLQVILPTIGVIRNQVAWQRLAPSLAWAQFAAMITSFGALIA
CCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
GFYYNDFSLSYVAQHSNTLLPWYYKLSATWGGHEGSLLLWMTIMATWCALVSYFSRGLPL
HHHCCCCCCEEHHHCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCH
SMRARVLVILAGVQLMMLTMLIFTSSPFERTLPNLAVDGADLNPVLQDFGLIIHPPMLYM
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCEECCCCCCHHHHHCCCCCCCHHHHH
GYVGMVVPFAFCMAALWEGRLDAAWTRWSRPWALAAWGFLTIGIALGSWWAYYELGWGGW
HHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHCHHHEEEECCCCE
WFWDPVENASFMPWLVGLALLHSLAVTEKRGVFKAWTIMLAIFAFALSLLGTFLVRSGVL
EEECCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TSVHSFAADPTRGLVILAILGIIIGSGLLMFAVRGWRLTVESQYQLISRESFLVINNAII
HHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHCCCEEEEHHHHHHHCCCCEEEECHHHH
LIATLVVLLGTLYPIIADAFGLGQVSVGPPYFNALFVPLTWLLLIAMGMGSNIRWKKDTR
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEECCCCC
PLLGIGMVIAVSSLVLAAIITYFVNPSSMLNIGVTLAVSFWVLLWMAVDFKDKTKNAPNF
CHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH
FNGLRQLRLSYWGQQTAHIGVLVAVIGIAFTSSLSIERDVAMGIGDTVNVQGYDFEVTEF
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCEEECCCCCCCCEEE
FEIKGSNFDATQAQVVVSKNGREVAKLNPEKRTYIISTMPTTEAAIDASLMRDVYVALGE
EEECCCCCCCCCEEEEEECCCCCHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCC
PIADGSNQWALRIYVKPLIRWIWLGAIIMALGGLISMLDKRYRIKKVKAPLLVTGDLATD
CCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCC
GVNEVAIEQAISASTMSTLKEK
CHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLITELGYFALLTAFVLALLQVILPTIGVIRNQVAWQRLAPSLAWAQFAAMITSFGALIA
CCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
GFYYNDFSLSYVAQHSNTLLPWYYKLSATWGGHEGSLLLWMTIMATWCALVSYFSRGLPL
HHHCCCCCCEEHHHCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCH
SMRARVLVILAGVQLMMLTMLIFTSSPFERTLPNLAVDGADLNPVLQDFGLIIHPPMLYM
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCEECCCCCCHHHHHCCCCCCCHHHHH
GYVGMVVPFAFCMAALWEGRLDAAWTRWSRPWALAAWGFLTIGIALGSWWAYYELGWGGW
HHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHCHHHEEEECCCCE
WFWDPVENASFMPWLVGLALLHSLAVTEKRGVFKAWTIMLAIFAFALSLLGTFLVRSGVL
EEECCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TSVHSFAADPTRGLVILAILGIIIGSGLLMFAVRGWRLTVESQYQLISRESFLVINNAII
HHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHCCCEEEEHHHHHHHCCCCEEEECHHHH
LIATLVVLLGTLYPIIADAFGLGQVSVGPPYFNALFVPLTWLLLIAMGMGSNIRWKKDTR
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEECCCCC
PLLGIGMVIAVSSLVLAAIITYFVNPSSMLNIGVTLAVSFWVLLWMAVDFKDKTKNAPNF
CHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH
FNGLRQLRLSYWGQQTAHIGVLVAVIGIAFTSSLSIERDVAMGIGDTVNVQGYDFEVTEF
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCEEECCCCCCCCEEE
FEIKGSNFDATQAQVVVSKNGREVAKLNPEKRTYIISTMPTTEAAIDASLMRDVYVALGE
EEECCCCCCCCCEEEEEECCCCCHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCC
PIADGSNQWALRIYVKPLIRWIWLGAIIMALGGLISMLDKRYRIKKVKAPLLVTGDLATD
CCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCC
GVNEVAIEQAISASTMSTLKEK
CHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]