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The map label for this gene is yfmD [H]

Identifier: 93006111

GI number: 93006111

Start: 1560100

End: 1561176

Strand: Direct

Name: yfmD [H]

Synonym: Pcryo_1283

Alternate gene names: 93006111

Gene position: 1560100-1561176 (Clockwise)

Preceding gene: 93006110

Following gene: 93006112

Centisome position: 50.99

GC content: 49.95

Gene sequence:

>1077_bases
ATGGTTGAACCGCAACTGAGCTGCTCATCTTCTATATCCTTAAAACCCCATATTGCAAAGCGCCCGATAATACGGGCGTT
ATTATGGTGTGGGTTATTGGTCATTTTACTGATTGGCTGCTGGCAAGGGTTAACGGCATATTCAAAATTTGCCCTGTCGT
TGACGGATTTATTTTCCTTATTGACGCAGCAAAATAGTCAAGCGTCGCTAACTGCACAATTATTAATAGAGATTCGCCTG
CCGCGCGTGCTCGTGGCGATTATAGTCGGTGCCAATTTGGCGGTGGCGGGGTTACTAATGCAAGTGATGACCCGTAACTC
ACTGGCATCTCCTGCGGTATTGGGTATCAATGCAGGGGCAGCGTGCGTGGTTGCTTTATCTTCTATTGGTTTAGGATTTA
CCTTTTTAACCTCTACCTTTTTGCAAGCAATGGTTGGGGCAGTGCTCTCTTGTGCCCTCGTTGCAGGATTGGCGGGTTAT
TTTTCTGGGCGTCCGGTGCATCCTGTTCGTCTAATCTTATCGGGCGTTGCTATCAATGCGCTGCTGGTCGGCATGACACG
AGCGGCGCTGATTACTACGGATGAGCAAGCTTATGGGGTACTGTATTGGCTAGCTGGCTCTATTGCCAATACGCGCTGGG
AGTCCATTCCCATGCTAGCGGCTATATCGCTGCTGACCTTGGGTTATGGCTGGTGGCTATCACCTAAATTAAATGTCTTG
GTGCTGGGCGATGATGTGGCAAGTAGCCTTGGGGTGAACCTGCGGGCATTACAGTGGTCATGTGGGGCATTGATTACGAT
ATTGACGGCGATCAGTGTGGCGGTCGCCGGTCCTGTTGCCTTTGTCGGTTTGATTATCCCCCATGTTGCCAAGCGCCTGT
TAAAGCAGGTATCGAATATGGCTTATGAGCAGATTTTGCCATTGTCTATGCTGCTTGGCAGTATATTGATGGTGTGGGCG
GATGTCTTGTCACGGGCGGTTGCGTATCCAGCAGAGACACCAGTGGGCTTGCTAACGGCACTTATTGGGACACCTGTTTT
TATTGCGCTGGCGTGTAGAAGACGACTCGATAGCTGA

Upstream 100 bases:

>100_bases
GATTGCTAAGCCAAAAGGCAAAAAAAGTTCAAGTCCTTCTTTAAAAGAGTCAAATTAATGAGACATTGTACTACTGTCTT
TTTAAAACAAGGCGATTTTT

Downstream 100 bases:

>100_bases
TCGATAGCTAATACAAGCAAGTTTGAAATACTTTATAAATGACTGTCGAATATAAGTGACTGTTCAATGTGAAAGTCGGT
TATATATGTTTTTATGGCTT

Product: transport system permease

Products: ADP; phosphate; iron dicitrate [Cytoplasm] [C]

Alternate protein names: Ferric-citrate import system permease protein [H]

Number of amino acids: Translated: 358; Mature: 358

Protein sequence:

>358_residues
MVEPQLSCSSSISLKPHIAKRPIIRALLWCGLLVILLIGCWQGLTAYSKFALSLTDLFSLLTQQNSQASLTAQLLIEIRL
PRVLVAIIVGANLAVAGLLMQVMTRNSLASPAVLGINAGAACVVALSSIGLGFTFLTSTFLQAMVGAVLSCALVAGLAGY
FSGRPVHPVRLILSGVAINALLVGMTRAALITTDEQAYGVLYWLAGSIANTRWESIPMLAAISLLTLGYGWWLSPKLNVL
VLGDDVASSLGVNLRALQWSCGALITILTAISVAVAGPVAFVGLIIPHVAKRLLKQVSNMAYEQILPLSMLLGSILMVWA
DVLSRAVAYPAETPVGLLTALIGTPVFIALACRRRLDS

Sequences:

>Translated_358_residues
MVEPQLSCSSSISLKPHIAKRPIIRALLWCGLLVILLIGCWQGLTAYSKFALSLTDLFSLLTQQNSQASLTAQLLIEIRL
PRVLVAIIVGANLAVAGLLMQVMTRNSLASPAVLGINAGAACVVALSSIGLGFTFLTSTFLQAMVGAVLSCALVAGLAGY
FSGRPVHPVRLILSGVAINALLVGMTRAALITTDEQAYGVLYWLAGSIANTRWESIPMLAAISLLTLGYGWWLSPKLNVL
VLGDDVASSLGVNLRALQWSCGALITILTAISVAVAGPVAFVGLIIPHVAKRLLKQVSNMAYEQILPLSMLLGSILMVWA
DVLSRAVAYPAETPVGLLTALIGTPVFIALACRRRLDS
>Mature_358_residues
MVEPQLSCSSSISLKPHIAKRPIIRALLWCGLLVILLIGCWQGLTAYSKFALSLTDLFSLLTQQNSQASLTAQLLIEIRL
PRVLVAIIVGANLAVAGLLMQVMTRNSLASPAVLGINAGAACVVALSSIGLGFTFLTSTFLQAMVGAVLSCALVAGLAGY
FSGRPVHPVRLILSGVAINALLVGMTRAALITTDEQAYGVLYWLAGSIANTRWESIPMLAAISLLTLGYGWWLSPKLNVL
VLGDDVASSLGVNLRALQWSCGALITILTAISVAVAGPVAFVGLIIPHVAKRLLKQVSNMAYEQILPLSMLLGSILMVWA
DVLSRAVAYPAETPVGLLTALIGTPVFIALACRRRLDS

Specific function: Part of the ABC transporter complex yfmCDEF involved in citrate-dependent Fe(3+) import. Involved in the translocation of the substrate across the membrane (Probable) [H]

COG id: COG0609

COG function: function code P; ABC-type Fe3+-siderophore transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790741, Length=343, Percent_Identity=39.067055393586, Blast_Score=191, Evalue=6e-50,
Organism=Escherichia coli, GI1790740, Length=285, Percent_Identity=35.7894736842105, Blast_Score=137, Evalue=8e-34,
Organism=Escherichia coli, GI1786805, Length=281, Percent_Identity=33.8078291814947, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI1786347, Length=291, Percent_Identity=31.9587628865979, Blast_Score=105, Evalue=4e-24,
Organism=Escherichia coli, GI1788004, Length=280, Percent_Identity=33.2142857142857, Blast_Score=99, Evalue=5e-22,
Organism=Escherichia coli, GI1786804, Length=218, Percent_Identity=36.2385321100917, Blast_Score=97, Evalue=2e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000522 [H]

Pfam domain/function: PF01032 FecCD [H]

EC number: NA

Molecular weight: Translated: 37752; Mature: 37752

Theoretical pI: Translated: 9.51; Mature: 9.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVEPQLSCSSSISLKPHIAKRPIIRALLWCGLLVILLIGCWQGLTAYSKFALSLTDLFSL
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LTQQNSQASLTAQLLIEIRLPRVLVAIIVGANLAVAGLLMQVMTRNSLASPAVLGINAGA
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCEEECCCCH
ACVVALSSIGLGFTFLTSTFLQAMVGAVLSCALVAGLAGYFSGRPVHPVRLILSGVAINA
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
LLVGMTRAALITTDEQAYGVLYWLAGSIANTRWESIPMLAAISLLTLGYGWWLSPKLNVL
HHHHHHHHHEEEECCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCEECCCCEEE
VLGDDVASSLGVNLRALQWSCGALITILTAISVAVAGPVAFVGLIIPHVAKRLLKQVSNM
EECCHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AYEQILPLSMLLGSILMVWADVLSRAVAYPAETPVGLLTALIGTPVFIALACRRRLDS
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MVEPQLSCSSSISLKPHIAKRPIIRALLWCGLLVILLIGCWQGLTAYSKFALSLTDLFSL
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LTQQNSQASLTAQLLIEIRLPRVLVAIIVGANLAVAGLLMQVMTRNSLASPAVLGINAGA
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCEEECCCCH
ACVVALSSIGLGFTFLTSTFLQAMVGAVLSCALVAGLAGYFSGRPVHPVRLILSGVAINA
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
LLVGMTRAALITTDEQAYGVLYWLAGSIANTRWESIPMLAAISLLTLGYGWWLSPKLNVL
HHHHHHHHHEEEECCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCEECCCCEEE
VLGDDVASSLGVNLRALQWSCGALITILTAISVAVAGPVAFVGLIIPHVAKRLLKQVSNM
EECCHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AYEQILPLSMLLGSILMVWADVLSRAVAYPAETPVGLLTALIGTPVFIALACRRRLDS
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; iron dicitrate [Periplasm]; H2O [C]

Specific reaction: ATP + iron dicitrate [Periplasm] + H2O = ADP + phosphate + iron dicitrate [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9272861; 9384377 [H]