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The map label for this gene is ygiD [H]

Identifier: 93006102

GI number: 93006102

Start: 1544719

End: 1545537

Strand: Direct

Name: ygiD [H]

Synonym: Pcryo_1274

Alternate gene names: 93006102

Gene position: 1544719-1545537 (Clockwise)

Preceding gene: 93006101

Following gene: 93006109

Centisome position: 50.48

GC content: 44.32

Gene sequence:

>819_bases
ATGAATAATGAGTCTATTTCAGCCACGCAGCCAGTATTATTTATACCTCACGGTGCAGGTCCTTGTTTTTTTATGGAGTG
GCAGCCAACTGATACTTGGGATCAAATGGCCGAATTTTTAAAAGGTATCTCAAGTCGCTTGCCACAGCGCCCAAAAGCTG
TTTTGATCATCAGCGCACATTGGCAAGCACCCGAGTTTAGTATCACCACTAGTATGCAACCTGATCTAATTTATGATTAT
TATGGGTTCCCTGAGCATACTTATCAGCTGACTTATCCAGCAGTGGGCGCGCCAGTATTGGCTGAACGGATAGGTAATAT
GCTCACTGATGCAGGTTTAAACAATACACAAGATGCTATAAGAGGCTTTGATCATGGAGTATTCATCCCGTTAAAACTCA
TGTTCCCTAATGCGGATATTCCAGTAGTGCAGTTATCGCTACGTCATGATCTCGATCCTGAAGCCCATTTAATGGCAGGT
AAAGCAATTGCGGCATTACGTAATGAAGGGGTGTTGATTGTGGGCAGCGGTATGAGTTTTCATAATATGCGCGGTTATGG
CGATAAAAAATTCACGGCTCCATCAGTGGTATTTGATAATTGGTTAACTAAGACGGTTGCAGCCGATGAAGATGCGCGAT
TTGCAGCCCTTAGTGATTGGTCTAAAGCGCCCCATGCTATCGAGTCTCATCTATTAGGAAGCGAAGAGCATTTGATCCCG
CTGATGGTTATCGCGGGCGCAGCAGGAACAGATCAAGGGCAAAAGGTCTATTCTCAGCAAGTAATGAAGACTCAGATATC
AGCCTTTCAGTTTGGCTAA

Upstream 100 bases:

>100_bases
TGCTTCCATGTGGCTTATTATTATTTAAAAGCATTGAATCCTAATGGAACTGTCCCTGTTCATCCTAGCAGTATTTAGTA
AAGATAATGGAGTGAAGCTA

Downstream 100 bases:

>100_bases
GCTCAGATTCTTCTATCAAACCTCAATATCAATCAAGCTACCTGAATGTTTCTAAAATTAATAAGAGCCCGCTAAAATGC
CTCAGTAGATGCTTAGTGGG

Product: extradiol ring-cleavage dioxygenase III subunit B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 272; Mature: 272

Protein sequence:

>272_residues
MNNESISATQPVLFIPHGAGPCFFMEWQPTDTWDQMAEFLKGISSRLPQRPKAVLIISAHWQAPEFSITTSMQPDLIYDY
YGFPEHTYQLTYPAVGAPVLAERIGNMLTDAGLNNTQDAIRGFDHGVFIPLKLMFPNADIPVVQLSLRHDLDPEAHLMAG
KAIAALRNEGVLIVGSGMSFHNMRGYGDKKFTAPSVVFDNWLTKTVAADEDARFAALSDWSKAPHAIESHLLGSEEHLIP
LMVIAGAAGTDQGQKVYSQQVMKTQISAFQFG

Sequences:

>Translated_272_residues
MNNESISATQPVLFIPHGAGPCFFMEWQPTDTWDQMAEFLKGISSRLPQRPKAVLIISAHWQAPEFSITTSMQPDLIYDY
YGFPEHTYQLTYPAVGAPVLAERIGNMLTDAGLNNTQDAIRGFDHGVFIPLKLMFPNADIPVVQLSLRHDLDPEAHLMAG
KAIAALRNEGVLIVGSGMSFHNMRGYGDKKFTAPSVVFDNWLTKTVAADEDARFAALSDWSKAPHAIESHLLGSEEHLIP
LMVIAGAAGTDQGQKVYSQQVMKTQISAFQFG
>Mature_272_residues
MNNESISATQPVLFIPHGAGPCFFMEWQPTDTWDQMAEFLKGISSRLPQRPKAVLIISAHWQAPEFSITTSMQPDLIYDY
YGFPEHTYQLTYPAVGAPVLAERIGNMLTDAGLNNTQDAIRGFDHGVFIPLKLMFPNADIPVVQLSLRHDLDPEAHLMAG
KAIAALRNEGVLIVGSGMSFHNMRGYGDKKFTAPSVVFDNWLTKTVAADEDARFAALSDWSKAPHAIESHLLGSEEHLIP
LMVIAGAAGTDQGQKVYSQQVMKTQISAFQFG

Specific function: Unknown

COG id: COG3384

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DODA-type extradiol aromatic ring- opening dioxygenase family [H]

Homologues:

Organism=Escherichia coli, GI226510974, Length=244, Percent_Identity=30.7377049180328, Blast_Score=114, Evalue=5e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014436
- InterPro:   IPR004183 [H]

Pfam domain/function: PF02900 LigB [H]

EC number: NA

Molecular weight: Translated: 29947; Mature: 29947

Theoretical pI: Translated: 5.49; Mature: 5.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNESISATQPVLFIPHGAGPCFFMEWQPTDTWDQMAEFLKGISSRLPQRPKAVLIISAH
CCCCCCCCCCCEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEC
WQAPEFSITTSMQPDLIYDYYGFPEHTYQLTYPAVGAPVLAERIGNMLTDAGLNNTQDAI
CCCCCEEEECCCCCCEEEEECCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHH
RGFDHGVFIPLKLMFPNADIPVVQLSLRHDLDPEAHLMAGKAIAALRNEGVLIVGSGMSF
HHCCCCEEEEEEEECCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCC
HNMRGYGDKKFTAPSVVFDNWLTKTVAADEDARFAALSDWSKAPHAIESHLLGSEEHLIP
CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEECCCCCCCCHHHHHHHCCCCCCEEE
LMVIAGAAGTDQGQKVYSQQVMKTQISAFQFG
EEEEECCCCCCHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNNESISATQPVLFIPHGAGPCFFMEWQPTDTWDQMAEFLKGISSRLPQRPKAVLIISAH
CCCCCCCCCCCEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEC
WQAPEFSITTSMQPDLIYDYYGFPEHTYQLTYPAVGAPVLAERIGNMLTDAGLNNTQDAI
CCCCCEEEECCCCCCEEEEECCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHH
RGFDHGVFIPLKLMFPNADIPVVQLSLRHDLDPEAHLMAGKAIAALRNEGVLIVGSGMSF
HHCCCCEEEEEEEECCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCC
HNMRGYGDKKFTAPSVVFDNWLTKTVAADEDARFAALSDWSKAPHAIESHLLGSEEHLIP
CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEECCCCCCCCHHHHHHHCCCCCCEEE
LMVIAGAAGTDQGQKVYSQQVMKTQISAFQFG
EEEEECCCCCCHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1314093; 9278503 [H]