| Definition | Psychrobacter cryohalolentis K5 chromosome, complete genome. |
|---|---|
| Accession | NC_007969 |
| Length | 3,059,876 |
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The map label for this gene is benD [H]
Identifier: 93006092
GI number: 93006092
Start: 1535249
End: 1536028
Strand: Reverse
Name: benD [H]
Synonym: Pcryo_1264
Alternate gene names: 93006092
Gene position: 1536028-1535249 (Counterclockwise)
Preceding gene: 93006093
Following gene: 93006091
Centisome position: 50.2
GC content: 46.15
Gene sequence:
>780_bases ATGAGTAAAAGATTTGATAATAAAGTATGTATCGTTACTGGTGCCGCCCAAGGCATCGGGCGCGGAGTCGCATTACGCTT AGCAAGTGAGGGCGGAAAAATCGTCATGGCAGACTTTTCTCCATTAGTAGAAGAGGTGCTGGCTGAAATCATCGCTAATG GTGGAGAAGCCGTTAGCATTCAAGCTGACCTTGAAACCCATCAAGGTGCTAAAGAGGCTATTGATAAGGCACTTGATAGC TATGGGCGTATCGATATATTAGTCAACAATGTCGGCGGCGCAATATGGATGAAACCTTTTACCAGCTTCTCTGAAGTAGA AATTCAAAAGGAAATCAGCCGCTCATTATTTCCAACATTATGGTGTTGTCATGCGGTATTACCAACCATGGTCAAACAGC AATCAGGCACTATTGTTAATGTGTCCTCTATCGCTACTCGCGGTATCAACCGCATACCCTATTCGACAGCGAAAGGCGGC GTGAACGCCATGACCGCATCGCTCGCTTTTGAGTATGCAAACGATGGTATCCGTGTGAATGCTGTAGCAACTGGCGGTAC TGAAGCGCCGCCCAGAAAGATTCCACGTAACGCCAAACCATTAACTGATGATGAAAAATCATGGATGAATGCGGTGGTTG ATCAGACCATTGATCGCACCTTTATGAAACGCTACGGCACGATTGATGAGCAAGTCAATGCCATCTTGTTTTTAGCATCC GATGAGTCTTCTTATATTACTGGTAGTACCATTCCTGTGGGCGGTGGCGACGAAGGCTAA
Upstream 100 bases:
>100_bases GTAATTTTTACTATGAAAAATTCACGCCCAGTGAACAATAACGTAGCCTAGCCGTATTACTCTACTAGCAAAGCATGAGC AAGATTTTTAGGAGACTGTC
Downstream 100 bases:
>100_bases TAATAAATCTGCCAATTAGTAGCATGCATCTTAATTTGCAACCCCGTAACGAATGCTAATTTGCAAGGAAGCAATATGGC CTCTGTAATCCAAACCTTAA
Product: 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase
Products: NA
Alternate protein names: 2-hydro-1,2-dihydroxybenzoate dehydrogenase; DHB dehydrogenase; Cis-1,2-dihydroxy-3,4-cyclohexadiene-1-carboxylate dehydrogenase; Cis-1,2-dihydroxycyclohexa-3,5-diene-1-carboxylate dehydrogenase [H]
Number of amino acids: Translated: 259; Mature: 258
Protein sequence:
>259_residues MSKRFDNKVCIVTGAAQGIGRGVALRLASEGGKIVMADFSPLVEEVLAEIIANGGEAVSIQADLETHQGAKEAIDKALDS YGRIDILVNNVGGAIWMKPFTSFSEVEIQKEISRSLFPTLWCCHAVLPTMVKQQSGTIVNVSSIATRGINRIPYSTAKGG VNAMTASLAFEYANDGIRVNAVATGGTEAPPRKIPRNAKPLTDDEKSWMNAVVDQTIDRTFMKRYGTIDEQVNAILFLAS DESSYITGSTIPVGGGDEG
Sequences:
>Translated_259_residues MSKRFDNKVCIVTGAAQGIGRGVALRLASEGGKIVMADFSPLVEEVLAEIIANGGEAVSIQADLETHQGAKEAIDKALDS YGRIDILVNNVGGAIWMKPFTSFSEVEIQKEISRSLFPTLWCCHAVLPTMVKQQSGTIVNVSSIATRGINRIPYSTAKGG VNAMTASLAFEYANDGIRVNAVATGGTEAPPRKIPRNAKPLTDDEKSWMNAVVDQTIDRTFMKRYGTIDEQVNAILFLAS DESSYITGSTIPVGGGDEG >Mature_258_residues SKRFDNKVCIVTGAAQGIGRGVALRLASEGGKIVMADFSPLVEEVLAEIIANGGEAVSIQADLETHQGAKEAIDKALDSY GRIDILVNNVGGAIWMKPFTSFSEVEIQKEISRSLFPTLWCCHAVLPTMVKQQSGTIVNVSSIATRGINRIPYSTAKGGV NAMTASLAFEYANDGIRVNAVATGGTEAPPRKIPRNAKPLTDDEKSWMNAVVDQTIDRTFMKRYGTIDEQVNAILFLASD ESSYITGSTIPVGGGDEG
Specific function: Degradation of 2-hydro-1,2-dihydroxy benzoate (DHB) to catechol [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI19923817, Length=259, Percent_Identity=28.1853281853282, Blast_Score=103, Evalue=2e-22, Organism=Homo sapiens, GI7705925, Length=255, Percent_Identity=32.156862745098, Blast_Score=93, Evalue=2e-19, Organism=Homo sapiens, GI66933014, Length=256, Percent_Identity=31.25, Blast_Score=92, Evalue=6e-19, Organism=Homo sapiens, GI32483357, Length=267, Percent_Identity=29.5880149812734, Blast_Score=91, Evalue=9e-19, Organism=Homo sapiens, GI15277342, Length=268, Percent_Identity=26.4925373134328, Blast_Score=91, Evalue=1e-18, Organism=Homo sapiens, GI40254992, Length=255, Percent_Identity=29.8039215686275, Blast_Score=90, Evalue=2e-18, Organism=Homo sapiens, GI10190704, Length=266, Percent_Identity=27.8195488721804, Blast_Score=82, Evalue=6e-16, Organism=Homo sapiens, GI4504505, Length=192, Percent_Identity=31.25, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI126723750, Length=267, Percent_Identity=25.8426966292135, Blast_Score=76, Evalue=3e-14, Organism=Homo sapiens, GI31542939, Length=198, Percent_Identity=30.8080808080808, Blast_Score=73, Evalue=2e-13, Organism=Homo sapiens, GI5031737, Length=252, Percent_Identity=26.5873015873016, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI59889578, Length=204, Percent_Identity=28.4313725490196, Blast_Score=66, Evalue=2e-11, Organism=Homo sapiens, GI4758504, Length=190, Percent_Identity=28.4210526315789, Blast_Score=64, Evalue=9e-11, Organism=Escherichia coli, GI87082100, Length=257, Percent_Identity=33.0739299610895, Blast_Score=122, Evalue=2e-29, Organism=Escherichia coli, GI1787905, Length=257, Percent_Identity=30.3501945525292, Blast_Score=107, Evalue=7e-25, Organism=Escherichia coli, GI1789208, Length=257, Percent_Identity=32.6848249027237, Blast_Score=105, Evalue=2e-24, Organism=Escherichia coli, GI1787335, Length=254, Percent_Identity=30.7086614173228, Blast_Score=102, Evalue=2e-23, Organism=Escherichia coli, GI2367175, Length=257, Percent_Identity=30.7392996108949, Blast_Score=95, Evalue=4e-21, Organism=Escherichia coli, GI1790717, Length=254, Percent_Identity=29.5275590551181, Blast_Score=94, Evalue=1e-20, Organism=Escherichia coli, GI1788459, Length=257, Percent_Identity=29.5719844357977, Blast_Score=90, Evalue=1e-19, Organism=Escherichia coli, GI1789378, Length=263, Percent_Identity=27.7566539923954, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI87082160, Length=251, Percent_Identity=25.8964143426295, Blast_Score=74, Evalue=8e-15, Organism=Escherichia coli, GI1789057, Length=261, Percent_Identity=29.1187739463602, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1786812, Length=270, Percent_Identity=26.2962962962963, Blast_Score=63, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17562910, Length=270, Percent_Identity=34.0740740740741, Blast_Score=95, Evalue=3e-20, Organism=Caenorhabditis elegans, GI71994604, Length=260, Percent_Identity=31.5384615384615, Blast_Score=95, Evalue=3e-20, Organism=Caenorhabditis elegans, GI17531453, Length=270, Percent_Identity=32.962962962963, Blast_Score=94, Evalue=9e-20, Organism=Caenorhabditis elegans, GI17562904, Length=265, Percent_Identity=32.4528301886792, Blast_Score=92, Evalue=2e-19, Organism=Caenorhabditis elegans, GI71994600, Length=261, Percent_Identity=31.8007662835249, Blast_Score=92, Evalue=2e-19, Organism=Caenorhabditis elegans, GI17565030, Length=272, Percent_Identity=31.6176470588235, Blast_Score=90, Evalue=1e-18, Organism=Caenorhabditis elegans, GI17561402, Length=264, Percent_Identity=29.9242424242424, Blast_Score=90, Evalue=1e-18, Organism=Caenorhabditis elegans, GI17559104, Length=193, Percent_Identity=33.6787564766839, Blast_Score=89, Evalue=2e-18, Organism=Caenorhabditis elegans, GI17551412, Length=270, Percent_Identity=33.3333333333333, Blast_Score=88, Evalue=4e-18, Organism=Caenorhabditis elegans, GI17560676, Length=261, Percent_Identity=26.8199233716475, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI17555706, Length=264, Percent_Identity=29.9242424242424, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI17538486, Length=266, Percent_Identity=31.203007518797, Blast_Score=85, Evalue=3e-17, Organism=Caenorhabditis elegans, GI193204405, Length=273, Percent_Identity=30.7692307692308, Blast_Score=85, Evalue=3e-17, Organism=Caenorhabditis elegans, GI115534694, Length=260, Percent_Identity=30.3846153846154, Blast_Score=84, Evalue=6e-17, Organism=Caenorhabditis elegans, GI17568967, Length=210, Percent_Identity=32.8571428571429, Blast_Score=84, Evalue=7e-17, Organism=Caenorhabditis elegans, GI17560332, Length=267, Percent_Identity=30.7116104868914, Blast_Score=84, Evalue=7e-17, Organism=Caenorhabditis elegans, GI17544670, Length=266, Percent_Identity=27.4436090225564, Blast_Score=83, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17562908, Length=275, Percent_Identity=28.7272727272727, Blast_Score=83, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17562906, Length=276, Percent_Identity=30.0724637681159, Blast_Score=83, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17538480, Length=272, Percent_Identity=30.8823529411765, Blast_Score=81, Evalue=4e-16, Organism=Caenorhabditis elegans, GI72000259, Length=272, Percent_Identity=27.2058823529412, Blast_Score=79, Evalue=3e-15, Organism=Caenorhabditis elegans, GI25147288, Length=260, Percent_Identity=29.2307692307692, Blast_Score=79, Evalue=3e-15, Organism=Caenorhabditis elegans, GI17560150, Length=262, Percent_Identity=29.0076335877863, Blast_Score=78, Evalue=5e-15, Organism=Caenorhabditis elegans, GI17562990, Length=270, Percent_Identity=29.6296296296296, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17560220, Length=278, Percent_Identity=28.4172661870504, Blast_Score=75, Evalue=4e-14, Organism=Caenorhabditis elegans, GI17563726, Length=270, Percent_Identity=25.9259259259259, Blast_Score=70, Evalue=8e-13, Organism=Caenorhabditis elegans, GI17564282, Length=172, Percent_Identity=27.3255813953488, Blast_Score=68, Evalue=5e-12, Organism=Caenorhabditis elegans, GI71982365, Length=193, Percent_Identity=27.4611398963731, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17538182, Length=260, Percent_Identity=25.7692307692308, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17536651, Length=267, Percent_Identity=27.7153558052434, Blast_Score=65, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17508895, Length=146, Percent_Identity=30.1369863013699, Blast_Score=64, Evalue=8e-11, Organism=Caenorhabditis elegans, GI17508651, Length=255, Percent_Identity=28.2352941176471, Blast_Score=64, Evalue=9e-11, Organism=Saccharomyces cerevisiae, GI6322861, Length=191, Percent_Identity=31.9371727748691, Blast_Score=72, Evalue=1e-13, Organism=Saccharomyces cerevisiae, GI6323882, Length=227, Percent_Identity=29.9559471365639, Blast_Score=67, Evalue=4e-12, Organism=Drosophila melanogaster, GI21357041, Length=264, Percent_Identity=34.469696969697, Blast_Score=110, Evalue=7e-25, Organism=Drosophila melanogaster, GI28571526, Length=265, Percent_Identity=35.0943396226415, Blast_Score=108, Evalue=3e-24, Organism=Drosophila melanogaster, GI23397609, Length=261, Percent_Identity=32.183908045977, Blast_Score=98, Evalue=4e-21, Organism=Drosophila melanogaster, GI24644339, Length=261, Percent_Identity=31.4176245210728, Blast_Score=88, Evalue=5e-18, Organism=Drosophila melanogaster, GI21355319, Length=269, Percent_Identity=27.5092936802974, Blast_Score=87, Evalue=2e-17, Organism=Drosophila melanogaster, GI24639444, Length=255, Percent_Identity=27.843137254902, Blast_Score=85, Evalue=4e-17, Organism=Drosophila melanogaster, GI24643142, Length=253, Percent_Identity=30.0395256916996, Blast_Score=81, Evalue=7e-16, Organism=Drosophila melanogaster, GI18859837, Length=193, Percent_Identity=31.6062176165803, Blast_Score=78, Evalue=7e-15, Organism=Drosophila melanogaster, GI17737361, Length=198, Percent_Identity=30.8080808080808, Blast_Score=74, Evalue=7e-14, Organism=Drosophila melanogaster, GI281364892, Length=207, Percent_Identity=30.4347826086957, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI24640492, Length=211, Percent_Identity=27.0142180094787, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI21357673, Length=193, Percent_Identity=26.9430051813472, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI24644337, Length=220, Percent_Identity=29.0909090909091, Blast_Score=68, Evalue=5e-12, Organism=Drosophila melanogaster, GI21358495, Length=195, Percent_Identity=27.1794871794872, Blast_Score=68, Evalue=5e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: =1.3.1.25 [H]
Molecular weight: Translated: 27643; Mature: 27512
Theoretical pI: Translated: 4.97; Mature: 4.97
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKRFDNKVCIVTGAAQGIGRGVALRLASEGGKIVMADFSPLVEEVLAEIIANGGEAVSI CCCCCCCCEEEEEECCCCCCCCEEEEEECCCCEEEEECHHHHHHHHHHHHHHCCCCEEEE QADLETHQGAKEAIDKALDSYGRIDILVNNVGGAIWMKPFTSFSEVEIQKEISRSLFPTL EECCCCCCCHHHHHHHHHHCCCCEEEEEECCCCEEEECCCCCHHHHHHHHHHHHHHHHHH WCCHAVLPTMVKQQSGTIVNVSSIATRGINRIPYSTAKGGVNAMTASLAFEYANDGIRVN HHHHHHHHHHHHHCCCCEEEHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHEECCCCEEEE AVATGGTEAPPRKIPRNAKPLTDDEKSWMNAVVDQTIDRTFMKRYGTIDEQVNAILFLAS EEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEC DESSYITGSTIPVGGGDEG CCCCEEECCEEECCCCCCC >Mature Secondary Structure SKRFDNKVCIVTGAAQGIGRGVALRLASEGGKIVMADFSPLVEEVLAEIIANGGEAVSI CCCCCCCEEEEEECCCCCCCCEEEEEECCCCEEEEECHHHHHHHHHHHHHHCCCCEEEE QADLETHQGAKEAIDKALDSYGRIDILVNNVGGAIWMKPFTSFSEVEIQKEISRSLFPTL EECCCCCCCHHHHHHHHHHCCCCEEEEEECCCCEEEECCCCCHHHHHHHHHHHHHHHHHH WCCHAVLPTMVKQQSGTIVNVSSIATRGINRIPYSTAKGGVNAMTASLAFEYANDGIRVN HHHHHHHHHHHHHCCCCEEEHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHEECCCCEEEE AVATGGTEAPPRKIPRNAKPLTDDEKSWMNAVVDQTIDRTFMKRYGTIDEQVNAILFLAS EEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEC DESSYITGSTIPVGGGDEG CCCCEEECCEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 1740120 [H]