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The map label for this gene is yrbD [H]

Identifier: 93006043

GI number: 93006043

Start: 1472298

End: 1473746

Strand: Reverse

Name: yrbD [H]

Synonym: Pcryo_1215

Alternate gene names: 93006043

Gene position: 1473746-1472298 (Counterclockwise)

Preceding gene: 93006044

Following gene: 93006042

Centisome position: 48.16

GC content: 44.51

Gene sequence:

>1449_bases
ATGGAAGCGATTATTAATACCATCGTCGGCTATATATGGAGCGATGCGTTAGTTTATTTGGCACTCGGTGTCGGCATTTA
TTTTACCGTGATGACCCGCGGCGTACAGTTTCGCTATCTTAAAGAGATGGTTAGGCTGTTGTTTGACAAGCAAACCTCAA
CCCAAGGTATTAGCTCATTCCAAGCCTTTAGTATGGCCTTATCAGGCCGAATCGGCGTCGGTAACATTGCAGGGGTTGCC
ACCGCAATCGCAGCTGGTGGACCTGGCGCAGTATTTTGGATGATAGTTATGGGTCTGCTTGGCGGTGCCAGTGCCTTTAT
CGAGTCAACACTTGCACAGGTATATAAGCATACCGTTGATGACCAGTATCGTGGCGGCTCACCCTTTTATATCGAGCGTG
GCCTAAAGATGAAACCCTTTGCTATTTTAGTAGCTACGGTGACTTGTCTTTCTTATGGTGTTTTGGTGCCTGGCGTACAG
GCCAACACCATCGCTGATTCTTTTAATACCGCTTTTAACATCCCACCTGTTGCAACTGGTTTCATTATCGTTGCGCTGTT
AGCATTTATCATATTTGGTGGCATAAAACGTATTGCAAGCTTCGCTGGCAAGGTCGTGCCTATTATGGCGATCGGCTATG
TTTTGATGATGGTTATCGTCTTAGCCTTTAATGCCTCAAACCTACCTGCTATGTTCGCCTTGATTTTCAAAAGCGCGTTT
GGTATGGATGCTGTATTTGGCGGTATCGTCGGTCTAGCCATATCTTGGGGTGTCCGCCGTGCGGTATTCTCTAACGTTGC
TGGTGCAGGCGAAGCAACTTTCAGCTCAGCAGCTGCAGAGGTTTCTCATCCTGCCAAGCAAGGCTTAGTACAGAGTTTTT
CTATCTATATCGATACGGTTGTTGTCTGTACCGCTACTGCATTGATGATTTTATCTACTGGTATGTATAACGTCATTCCA
GCAGAAGGCTTGGTACTAGTCGAAAACATGCCAGGCATTGAAGCTGGAACCGCATTTACCCAAGCAGCTGTATCGACAGT
GTTTAGCCAATATGGAAGTGGCTTTGTCGCTATCGCCATCTTCTTGTTTGCCTTTACTTGCTTGATTGCTTATTACTATA
TTGCTGAGACCACGCTAGTATACTTAGACAATAAATTGCGCTACCCTGTTTTAAAACCATTATTAAAAATATTATTCTTA
ATAGTTTGCTTTACCGGTAGCATGCAGTCTGTTGGCGTGATGTGGGCGCTAGGTGATATTGGTTTTGGCAGCATGTGTTA
CCTTAACTTCATCGCTATCGTATTACTCAGTAAAACGGCGCTAAAAGTGTTAAAAGACTACGATGAGCAAATGAAGCTGG
GACTTGACCCTGTCTTTGACCCTAGAAAAGCAGGCGTTGAAAATGCAGACTTTTGGATAGAATATAGTGATAGACATCAT
AAGCGTTAA

Upstream 100 bases:

>100_bases
TGGTTAATTAACAAACGTATTCAGTCAGTACAGTCATCAATTAAAACAACAGCTTAAATGATTTAAGCCTTTAGTCACAT
ACTTACAGGGAAGTAAGGCC

Downstream 100 bases:

>100_bases
ATTCTAGCTAAATAATCGTAATTTTCCCCCATATAAGCCTCCTATATCATAATGATGTAGAAGGCTTTTTTCTATTATTA
GGCCCATTATCAATAACACA

Product: amino acid carrier protein

Products: Na (I) [Cytoplasm]; L-alanine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 482; Mature: 482

Protein sequence:

>482_residues
MEAIINTIVGYIWSDALVYLALGVGIYFTVMTRGVQFRYLKEMVRLLFDKQTSTQGISSFQAFSMALSGRIGVGNIAGVA
TAIAAGGPGAVFWMIVMGLLGGASAFIESTLAQVYKHTVDDQYRGGSPFYIERGLKMKPFAILVATVTCLSYGVLVPGVQ
ANTIADSFNTAFNIPPVATGFIIVALLAFIIFGGIKRIASFAGKVVPIMAIGYVLMMVIVLAFNASNLPAMFALIFKSAF
GMDAVFGGIVGLAISWGVRRAVFSNVAGAGEATFSSAAAEVSHPAKQGLVQSFSIYIDTVVVCTATALMILSTGMYNVIP
AEGLVLVENMPGIEAGTAFTQAAVSTVFSQYGSGFVAIAIFLFAFTCLIAYYYIAETTLVYLDNKLRYPVLKPLLKILFL
IVCFTGSMQSVGVMWALGDIGFGSMCYLNFIAIVLLSKTALKVLKDYDEQMKLGLDPVFDPRKAGVENADFWIEYSDRHH
KR

Sequences:

>Translated_482_residues
MEAIINTIVGYIWSDALVYLALGVGIYFTVMTRGVQFRYLKEMVRLLFDKQTSTQGISSFQAFSMALSGRIGVGNIAGVA
TAIAAGGPGAVFWMIVMGLLGGASAFIESTLAQVYKHTVDDQYRGGSPFYIERGLKMKPFAILVATVTCLSYGVLVPGVQ
ANTIADSFNTAFNIPPVATGFIIVALLAFIIFGGIKRIASFAGKVVPIMAIGYVLMMVIVLAFNASNLPAMFALIFKSAF
GMDAVFGGIVGLAISWGVRRAVFSNVAGAGEATFSSAAAEVSHPAKQGLVQSFSIYIDTVVVCTATALMILSTGMYNVIP
AEGLVLVENMPGIEAGTAFTQAAVSTVFSQYGSGFVAIAIFLFAFTCLIAYYYIAETTLVYLDNKLRYPVLKPLLKILFL
IVCFTGSMQSVGVMWALGDIGFGSMCYLNFIAIVLLSKTALKVLKDYDEQMKLGLDPVFDPRKAGVENADFWIEYSDRHH
KR
>Mature_482_residues
MEAIINTIVGYIWSDALVYLALGVGIYFTVMTRGVQFRYLKEMVRLLFDKQTSTQGISSFQAFSMALSGRIGVGNIAGVA
TAIAAGGPGAVFWMIVMGLLGGASAFIESTLAQVYKHTVDDQYRGGSPFYIERGLKMKPFAILVATVTCLSYGVLVPGVQ
ANTIADSFNTAFNIPPVATGFIIVALLAFIIFGGIKRIASFAGKVVPIMAIGYVLMMVIVLAFNASNLPAMFALIFKSAF
GMDAVFGGIVGLAISWGVRRAVFSNVAGAGEATFSSAAAEVSHPAKQGLVQSFSIYIDTVVVCTATALMILSTGMYNVIP
AEGLVLVENMPGIEAGTAFTQAAVSTVFSQYGSGFVAIAIFLFAFTCLIAYYYIAETTLVYLDNKLRYPVLKPLLKILFL
IVCFTGSMQSVGVMWALGDIGFGSMCYLNFIAIVLLSKTALKVLKDYDEQMKLGLDPVFDPRKAGVENADFWIEYSDRHH
KR

Specific function: Unknown

COG id: COG1115

COG function: function code E; Na+/alanine symporter

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:alanine (SAF) symporter family [H]

Homologues:

Organism=Escherichia coli, GI1786188, Length=470, Percent_Identity=37.8723404255319, Blast_Score=286, Evalue=2e-78,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001463 [H]

Pfam domain/function: PF01235 Na_Ala_symp [H]

EC number: NA

Molecular weight: Translated: 51776; Mature: 51776

Theoretical pI: Translated: 8.40; Mature: 8.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEAIINTIVGYIWSDALVYLALGVGIYFTVMTRGVQFRYLKEMVRLLFDKQTSTQGISSF
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHH
QAFSMALSGRIGVGNIAGVATAIAAGGPGAVFWMIVMGLLGGASAFIESTLAQVYKHTVD
HHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCC
DQYRGGSPFYIERGLKMKPFAILVATVTCLSYGVLVPGVQANTIADSFNTAFNIPPVATG
CCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCHHHH
FIIVALLAFIIFGGIKRIASFAGKVVPIMAIGYVLMMVIVLAFNASNLPAMFALIFKSAF
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHC
GMDAVFGGIVGLAISWGVRRAVFSNVAGAGEATFSSAAAEVSHPAKQGLVQSFSIYIDTV
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
VVCTATALMILSTGMYNVIPAEGLVLVENMPGIEAGTAFTQAAVSTVFSQYGSGFVAIAI
HHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHH
FLFAFTCLIAYYYIAETTLVYLDNKLRYPVLKPLLKILFLIVCFTGSMQSVGVMWALGDI
HHHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHEEEECCC
GFGSMCYLNFIAIVLLSKTALKVLKDYDEQMKLGLDPVFDPRKAGVENADFWIEYSDRHH
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCCCCEEEEECCCCC
KR
CC
>Mature Secondary Structure
MEAIINTIVGYIWSDALVYLALGVGIYFTVMTRGVQFRYLKEMVRLLFDKQTSTQGISSF
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHH
QAFSMALSGRIGVGNIAGVATAIAAGGPGAVFWMIVMGLLGGASAFIESTLAQVYKHTVD
HHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCC
DQYRGGSPFYIERGLKMKPFAILVATVTCLSYGVLVPGVQANTIADSFNTAFNIPPVATG
CCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCHHHH
FIIVALLAFIIFGGIKRIASFAGKVVPIMAIGYVLMMVIVLAFNASNLPAMFALIFKSAF
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHC
GMDAVFGGIVGLAISWGVRRAVFSNVAGAGEATFSSAAAEVSHPAKQGLVQSFSIYIDTV
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
VVCTATALMILSTGMYNVIPAEGLVLVENMPGIEAGTAFTQAAVSTVFSQYGSGFVAIAI
HHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHH
FLFAFTCLIAYYYIAETTLVYLDNKLRYPVLKPLLKILFLIVCFTGSMQSVGVMWALGDI
HHHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHEEEECCC
GFGSMCYLNFIAIVLLSKTALKVLKDYDEQMKLGLDPVFDPRKAGVENADFWIEYSDRHH
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCCCCEEEEECCCCC
KR
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Na (I) [Periplasm]; L-alanine [Periplasm] [C]

Specific reaction: Na (I) [Periplasm] + L-alanine [Periplasm] = Na (I) [Cytoplasm] + L-alanine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]