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The map label for this gene is yhcM [H]

Identifier: 93005922

GI number: 93005922

Start: 1318445

End: 1319566

Strand: Direct

Name: yhcM [H]

Synonym: Pcryo_1094

Alternate gene names: 93005922

Gene position: 1318445-1319566 (Clockwise)

Preceding gene: 93005921

Following gene: 93005923

Centisome position: 43.09

GC content: 43.58

Gene sequence:

>1122_bases
ATGATGAGTCGTATTATGAGTTTATCTCCCTTACAGCGTTATGAGCAAGCCATCAGCACGGATGAGTTTACTCGTGATGA
GCAGCAGTATTTGGCGATGAGTTACTTGGATGGTCTTTACCATCAGCTCAATGATAACGCGGTACAGAAAAAAGGCTTTT
TTAGTTTTTTAAAAGCAAAACCTGTTGCACCCAAAGGTTTGTATATGTGGGGCGGGGTAGGACGTGGTAAAACATGGATG
ATGGACATGTTTTATGATTCATTGACCATTGAGCGCAAGATGCGTCAACATTTTCATCATTTTATGCAGCGGGTACATCA
AGAGCTATATAAGCTGCAAGGCGAGAGCGACCCGTTAGAAAAAGTCGCTGATATCATCTATGCTGAAGCGGTGATTATCT
GTTTTGATGAGTTTTTTGTCTCTAACGTCTCTGATGCGATGATTTTGGGTGATTTGTTCACCATGCTATTCAATCGCGGT
ATTACCTTGGTAGCGACATCAAATATTGAGCCATCTGGACTCTATAAAGATGGCTTGCACCGAGATCGCTTTATGCCAGC
TATTGCCGAAGTTGAGAAGCATACCAGCGTTATGAATATCGACTCCGGTATTGATTATCGCTTGCGTGTACTGCAACAAG
CTGAGCTATACGAGTCGCCCATGACCAAAGCCAATCATCACTGGCTCGCCAACCGTTTTGCCAGCTTGTCTAACAATCAA
AAATTCAGTAATGAGCCTATCACTGTTAATGGTCGTGAAATCAGGATTAATGCGCGTACCGATGACATCTTATTTTGCGA
CTTCCGTCATTTATGCATGGAGCCGCGGTCGGCATCTGATTTTATTGAAATCGCTAAGCAGTTCAGCACCGTACTTATCA
ATGCCGTACCAGCGCTCGATGATGATTTGCGGGATCCAACACGACGTTTTATTTATTTAGTTGATGAGTTTTATGATCGC
CGTGTCAAATTATTGGTGCGCGCGCAACAGCCGATTCTTGAGTTATATCAAGGACAAAAACTGGCGTTCGAGATTGAACG
TACACGTTCGCGCCTGCTTGAGATGCAGTCAGAAGATTATCTGAAAATGGAGCATCGTACTGAAGATTCGGATGCAGCAT
AG

Upstream 100 bases:

>100_bases
AGCCATTCTGATAAACCAGTTGCTACTATCTCAGTGTAAAAATCATAAGTTAGTAGCGATTGTCGGTATTAATACTTTAT
TCTGATATTTATTTTGTTTA

Downstream 100 bases:

>100_bases
ATTTTATTCAATTCTTTAAATATTAAAAACCAGTTGTTGTCCAATACTGTTGGCTACTCTATAACAATATAGCAGCAGCT
GGGTTGTTTCTACTTATATC

Product: AFG1-like ATPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 373; Mature: 373

Protein sequence:

>373_residues
MMSRIMSLSPLQRYEQAISTDEFTRDEQQYLAMSYLDGLYHQLNDNAVQKKGFFSFLKAKPVAPKGLYMWGGVGRGKTWM
MDMFYDSLTIERKMRQHFHHFMQRVHQELYKLQGESDPLEKVADIIYAEAVIICFDEFFVSNVSDAMILGDLFTMLFNRG
ITLVATSNIEPSGLYKDGLHRDRFMPAIAEVEKHTSVMNIDSGIDYRLRVLQQAELYESPMTKANHHWLANRFASLSNNQ
KFSNEPITVNGREIRINARTDDILFCDFRHLCMEPRSASDFIEIAKQFSTVLINAVPALDDDLRDPTRRFIYLVDEFYDR
RVKLLVRAQQPILELYQGQKLAFEIERTRSRLLEMQSEDYLKMEHRTEDSDAA

Sequences:

>Translated_373_residues
MMSRIMSLSPLQRYEQAISTDEFTRDEQQYLAMSYLDGLYHQLNDNAVQKKGFFSFLKAKPVAPKGLYMWGGVGRGKTWM
MDMFYDSLTIERKMRQHFHHFMQRVHQELYKLQGESDPLEKVADIIYAEAVIICFDEFFVSNVSDAMILGDLFTMLFNRG
ITLVATSNIEPSGLYKDGLHRDRFMPAIAEVEKHTSVMNIDSGIDYRLRVLQQAELYESPMTKANHHWLANRFASLSNNQ
KFSNEPITVNGREIRINARTDDILFCDFRHLCMEPRSASDFIEIAKQFSTVLINAVPALDDDLRDPTRRFIYLVDEFYDR
RVKLLVRAQQPILELYQGQKLAFEIERTRSRLLEMQSEDYLKMEHRTEDSDAA
>Mature_373_residues
MMSRIMSLSPLQRYEQAISTDEFTRDEQQYLAMSYLDGLYHQLNDNAVQKKGFFSFLKAKPVAPKGLYMWGGVGRGKTWM
MDMFYDSLTIERKMRQHFHHFMQRVHQELYKLQGESDPLEKVADIIYAEAVIICFDEFFVSNVSDAMILGDLFTMLFNRG
ITLVATSNIEPSGLYKDGLHRDRFMPAIAEVEKHTSVMNIDSGIDYRLRVLQQAELYESPMTKANHHWLANRFASLSNNQ
KFSNEPITVNGREIRINARTDDILFCDFRHLCMEPRSASDFIEIAKQFSTVLINAVPALDDDLRDPTRRFIYLVDEFYDR
RVKLLVRAQQPILELYQGQKLAFEIERTRSRLLEMQSEDYLKMEHRTEDSDAA

Specific function: Unknown

COG id: COG1485

COG function: function code R; Predicted ATPase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AFG1 ATPase family [H]

Homologues:

Organism=Homo sapiens, GI21918872, Length=407, Percent_Identity=34.8894348894349, Blast_Score=246, Evalue=2e-65,
Organism=Escherichia coli, GI1789627, Length=374, Percent_Identity=45.4545454545455, Blast_Score=334, Evalue=7e-93,
Organism=Caenorhabditis elegans, GI17505769, Length=369, Percent_Identity=34.1463414634146, Blast_Score=220, Evalue=1e-57,
Organism=Saccharomyces cerevisiae, GI6320783, Length=389, Percent_Identity=31.8766066838046, Blast_Score=159, Evalue=5e-40,
Organism=Drosophila melanogaster, GI20129913, Length=424, Percent_Identity=33.0188679245283, Blast_Score=212, Evalue=4e-55,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005654 [H]

Pfam domain/function: PF03969 AFG1_ATPase [H]

EC number: NA

Molecular weight: Translated: 43584; Mature: 43584

Theoretical pI: Translated: 5.98; Mature: 5.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMSRIMSLSPLQRYEQAISTDEFTRDEQQYLAMSYLDGLYHQLNDNAVQKKGFFSFLKAK
CCCHHHHHHHHHHHHHHHCHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC
PVAPKGLYMWGGVGRGKTWMMDMFYDSLTIERKMRQHFHHFMQRVHQELYKLQGESDPLE
CCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
KVADIIYAEAVIICFDEFFVSNVSDAMILGDLFTMLFNRGITLVATSNIEPSGLYKDGLH
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCC
RDRFMPAIAEVEKHTSVMNIDSGIDYRLRVLQQAELYESPMTKANHHWLANRFASLSNNQ
HHHHHHHHHHHHHHHCEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCC
KFSNEPITVNGREIRINARTDDILFCDFRHLCMEPRSASDFIEIAKQFSTVLINAVPALD
CCCCCCEEECCCEEEEECCCCCEEEECHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCC
DDLRDPTRRFIYLVDEFYDRRVKLLVRAQQPILELYQGQKLAFEIERTRSRLLEMQSEDY
CHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEHHHHHHHHHHHHCCCCH
LKMEHRTEDSDAA
HHHHCCCCCCCCC
>Mature Secondary Structure
MMSRIMSLSPLQRYEQAISTDEFTRDEQQYLAMSYLDGLYHQLNDNAVQKKGFFSFLKAK
CCCHHHHHHHHHHHHHHHCHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC
PVAPKGLYMWGGVGRGKTWMMDMFYDSLTIERKMRQHFHHFMQRVHQELYKLQGESDPLE
CCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
KVADIIYAEAVIICFDEFFVSNVSDAMILGDLFTMLFNRGITLVATSNIEPSGLYKDGLH
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCC
RDRFMPAIAEVEKHTSVMNIDSGIDYRLRVLQQAELYESPMTKANHHWLANRFASLSNNQ
HHHHHHHHHHHHHHHCEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCC
KFSNEPITVNGREIRINARTDDILFCDFRHLCMEPRSASDFIEIAKQFSTVLINAVPALD
CCCCCCEEECCCEEEEECCCCCEEEECHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCC
DDLRDPTRRFIYLVDEFYDRRVKLLVRAQQPILELYQGQKLAFEIERTRSRLLEMQSEDY
CHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEHHHHHHHHHHHHCCCCH
LKMEHRTEDSDAA
HHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]