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The map label for this gene is ompW [H]

Identifier: 93005880

GI number: 93005880

Start: 1265233

End: 1265868

Strand: Reverse

Name: ompW [H]

Synonym: Pcryo_1052

Alternate gene names: 93005880

Gene position: 1265868-1265233 (Counterclockwise)

Preceding gene: 93005882

Following gene: 93005877

Centisome position: 41.37

GC content: 41.51

Gene sequence:

>636_bases
ATGAAACTACAATCCCTAGTTTTAGCCGCTGCTACTGCACTTACTATGACCACTGCTTTTGCTGTACCTGCAGGCACTTG
GACAGTTGCCGCTGGTGCGCATTATGTTGATCCTAAAAATGATAATGGTGATGTCACTATAGGGGGCACAAGCTATGCTG
TAGATGTTGATGGTGATGTCCGTCCAACCATCAGTGGTGAATACTTTATCGCTAATAACGTTGGTGTTGAACTACTCGCT
GCCATTCCATTTCATCATGACTTTACCTTAACTGATGCTTTAAATAATGAGATCACTGGTAGAACTCAGCATTTACCACC
AACGCTTTCTCTACAATATCACTTCGATGATTATAACCTACCTATGAATGTAAAACCGTTTGTGGGTGTTGGTGTAAACT
ACACGATGTTCTTTAAAGAAAAAGCAAACGTTGTAGGTACTGAATTAAAGCTTGATGATAGCGTTGGTGTTGCTGGTCAT
ATCGGTCTTGATATCCCATTTGCTGCCACTGAGTCTTTCCGTATTGATGCTCGCTATATGGACATCAAAACTGACGCTAC
TTTGAACGGTACTGACATTGGCAAAATCGACATCAGTCCTTGGGTTTATGGCGTTGCCTTTGTAAAACAGTTCTAA

Upstream 100 bases:

>100_bases
AGATGTTACAGGTTAATCCCTAGCCTAACATTATATGTTGCTAACTTATGACATCCCTCAGGAGCTAGCGACCATTATCT
AAACGTTAAGGAATTAAACG

Downstream 100 bases:

>100_bases
TTTATCAGAGTTATAAGCTAAAGATTGTGAATAAAAAAAGCCAGCTTAGTTGCGGGCTTTTTTGTGTCTGTTATTTATCT
ATATTCTAATCAAATAACAG

Product: OmpW

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 211; Mature: 211

Protein sequence:

>211_residues
MKLQSLVLAAATALTMTTAFAVPAGTWTVAAGAHYVDPKNDNGDVTIGGTSYAVDVDGDVRPTISGEYFIANNVGVELLA
AIPFHHDFTLTDALNNEITGRTQHLPPTLSLQYHFDDYNLPMNVKPFVGVGVNYTMFFKEKANVVGTELKLDDSVGVAGH
IGLDIPFAATESFRIDARYMDIKTDATLNGTDIGKIDISPWVYGVAFVKQF

Sequences:

>Translated_211_residues
MKLQSLVLAAATALTMTTAFAVPAGTWTVAAGAHYVDPKNDNGDVTIGGTSYAVDVDGDVRPTISGEYFIANNVGVELLA
AIPFHHDFTLTDALNNEITGRTQHLPPTLSLQYHFDDYNLPMNVKPFVGVGVNYTMFFKEKANVVGTELKLDDSVGVAGH
IGLDIPFAATESFRIDARYMDIKTDATLNGTDIGKIDISPWVYGVAFVKQF
>Mature_211_residues
MKLQSLVLAAATALTMTTAFAVPAGTWTVAAGAHYVDPKNDNGDVTIGGTSYAVDVDGDVRPTISGEYFIANNVGVELLA
AIPFHHDFTLTDALNNEITGRTQHLPPTLSLQYHFDDYNLPMNVKPFVGVGVNYTMFFKEKANVVGTELKLDDSVGVAGH
IGLDIPFAATESFRIDARYMDIKTDATLNGTDIGKIDISPWVYGVAFVKQF

Specific function: Acts As A Receptor For Colicin S4. [C]

COG id: COG3047

COG function: function code M; Outer membrane protein W

Gene ontology:

Cell location: Cell outer membrane [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the OmpW/AlkL family [H]

Homologues:

Organism=Escherichia coli, GI1787510, Length=213, Percent_Identity=35.2112676056338, Blast_Score=95, Evalue=4e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR005618 [H]

Pfam domain/function: PF03922 OmpW [H]

EC number: NA

Molecular weight: Translated: 22777; Mature: 22777

Theoretical pI: Translated: 4.54; Mature: 4.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLQSLVLAAATALTMTTAFAVPAGTWTVAAGAHYVDPKNDNGDVTIGGTSYAVDVDGDV
CCHHHHHHHHHHHHHHHEEEECCCCCEEEECCEEEECCCCCCCCEEECCCEEEEEECCCC
RPTISGEYFIANNVGVELLAAIPFHHDFTLTDALNNEITGRTQHLPPTLSLQYHFDDYNL
CCCCCCCEEEECCCCEEEEEECCCCCCEEEECCCCCCCCCCCCCCCCEEEEEEEECCCCC
PMNVKPFVGVGVNYTMFFKEKANVVGTELKLDDSVGVAGHIGLDIPFAATESFRIDARYM
CCCCCCEEECCCEEEEEEEECCCEEEEEEEECCCCCEEEEECEECCCCCCCCEEEEEEEE
DIKTDATLNGTDIGKIDISPWVYGVAFVKQF
EEECCCEECCCCCEEEECCHHHEEEEEEECC
>Mature Secondary Structure
MKLQSLVLAAATALTMTTAFAVPAGTWTVAAGAHYVDPKNDNGDVTIGGTSYAVDVDGDV
CCHHHHHHHHHHHHHHHEEEECCCCCEEEECCEEEECCCCCCCCEEECCCEEEEEECCCC
RPTISGEYFIANNVGVELLAAIPFHHDFTLTDALNNEITGRTQHLPPTLSLQYHFDDYNL
CCCCCCCEEEECCCCEEEEEECCCCCCEEEECCCCCCCCCCCCCCCCEEEEEEEECCCCC
PMNVKPFVGVGVNYTMFFKEKANVVGTELKLDDSVGVAGHIGLDIPFAATESFRIDARYM
CCCCCCEEECCCEEEEEEEECCCEEEEEEEECCCCCEEEEECEECCCCCCCCEEEEEEEE
DIKTDATLNGTDIGKIDISPWVYGVAFVKQF
EEECCCEECCCCCEEEECCHHHEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2336399; 10952301 [H]