| Definition | Psychrobacter cryohalolentis K5 chromosome, complete genome. |
|---|---|
| Accession | NC_007969 |
| Length | 3,059,876 |
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The map label for this gene is aceE [H]
Identifier: 93005878
GI number: 93005878
Start: 1260491
End: 1263304
Strand: Direct
Name: aceE [H]
Synonym: Pcryo_1050
Alternate gene names: 93005878
Gene position: 1260491-1263304 (Clockwise)
Preceding gene: 93005872
Following gene: 93005879
Centisome position: 41.19
GC content: 45.52
Gene sequence:
>2814_bases ATGAATTATTACAAGGATGCTGATAGCAGCGAAACGCAGGAATGGCTGCAAGCTTTTGAGTCTGTGATTAAGCATGCTGA TAAAGATCGCGCGCAGTTCTTATTAAAAGCCTTATATAATATGGGGGTGCAAGAAGGCCTGCCCTTTAACCGTTTAGATA CGGCCTATATCAATACCATCGCCGTTGAAGATGAGCCGATGTACCCAGGTGACTTGACGATCGAGCGCAAGATTCGCGCC TTGATTCGCTACAATGCTTTGGCAATGGTGATGCGCGCCAATAAAAACGATGACGATTTGGGCGGTCATTTAGCCTCATT TGCTTCTAGTGCGACGCTATATGAAACTGGTTTTAACCATTTCTTCCGTGCTGCCAGCGATCATTTCGGCGGCGATATGA TTTACTATCAAGGTCACTCAGCGCCAGGTATGTATGCCCGTTCTTATCTAGAAGGTCGCTTGACTGAAGATCAGTTGGAT AATTTCCGCCGTGAAGTCGGTGGTAAAGGGTTATCAAGCTATCCACATCCTTATTTGATGCCGGACTATTGGCAGTTCCC AACGGTTTCGATGGGCTTAGGTCCTATCATGTCAATCTACCATGCCCATGTACATCGCTATATGGAAAACCGCAAACTGC TAGAGTCAGAAGGTCGTAAGATTTGGGCGTTCTTAGGTGATGGTGAAACAGATGAGCCAGAAAGCTTAGGTGCTATCTCT CTTGCTGGTCGTGAAAAGCTGGATAACCTGATTTGGGTCGTTAACTGTAACCTGCAGCGCCTCGATGGTCCTGTTCGTGG TAATGGTAAAATTATTCAAGAACTTGAATCCGTGTTTCGCGGTGCAGGCTGGCGAGTGATTAAAGTGGTTTGGGGCGGTA ACTGGGACAGTCTGCTTGCTAATGATGATACCGGTGTCCTTAAACACCGTATGGAAGAGACAGTCGACGGTGAGTATCAG CTATATGAAGCGCGCGATGCCAAATTTACCCGTGAGCATTTCTTTAATAAGTATCCTGAATTAAAAGAGATGGCAGATGC CTTAACGGATGAAGATATTTCACGTCTGAACCGTGGTGGTCATGATCCGATGAAGGTTTATGCCGCGTTTAGTGAAGCCA TGAAAACCAAAGGTCAGCCGACGGTTATTTTAGTGAAGACGGTCAAAGGCTATGGTCTATCCACCACCCAAGCGGTTAAC AAATCGCATCAAGTCAAGAAGCTTGATCAAGAAGCATTGGTATACTTCCGTGACCGTTTTGACTTACCATTTACTGATGA GCAGTTAGAAACGCTTCCGTTCTACCGTCCAGCTGAAGACTCAGCAGAGATGAAGTATCTAAAAGGTCGCCGCGAAGCCT TGGGTGGCCATTTGCCAAATCGCCGTAGTGGTCATATTCCTTTGAATATCCCTGATTTATCTATCTTTGATCGTGTTTTA AAAGGTAGTAACGGTAAAGAACAATCAACCACCATGGTGTTTGTGCGCCTATTATCAGCAATGCTAAAGAACAAAGACAT CCAAGATCGCGTTGTACCTATCGTACCTGATGAAGCGCGTACCTTTGGTTTAGAAGGTATGTTCCGTCAATTAGGTATTT ACTCTGCCGTTGGTCAAAAGTATACACCTGAAGACAGTGAAGCCTTGATGGGTTATAAAGAAGCCATCGATGGTCATATG TTAGAAGAAGGTATCAACGAAGCGGGTGCAATGAGTGCGTGGATTGCGCTGGCAACCAGTTATTCAGTGAATGCGCTACC GATGATTCCGATGTACATCTACTACTCTATGTTCGGTTTCCAACGCATTGGTGATTTGGCTTGGGCGGCAGGTGATTGTC AAGCACAGGGTTTCTTATTGGGTGCTACGGCAGGTCGCACGACGTTAAATGGTGAAGGCTTGCAGCATCAAGATGGTCAT TCGCAAATTTTATTCAACGTCGTTCCTAACTGTGTGAGCTATGATCCGTGCTTTGGTTATGAGTTGGCAGTGATTATGCA TGATGGTTTACGCCGCATGTATGCTGAAGGTGAGCGTATTTATTACTATCTCACCGTGATGAATGAGAACTATGAGCAAC CTGCAATGCCAGAAGGCGTTGAAGAAGGCATCAAACGTGGTATGTATCTGCTAGAAGATAATGGTTCTGCGCAAGTTCAG CTGTTAGGTTCTGGTGTTATTTTACGTGAAGTGCAAAAAGCGGCACGTATCTTAAAAGACGAGTTTAATATCACATCGAA CGTCTGGAGTGTGACCAGCTTTAATGAGTTGACACGTGATGGTATGGCGTGTGATGACTATAATCGTCTACATCCAATGG ATGAAGAGCGCGTGCCATGGATTACTGAACAGCTTGCACCGCACGAAGGTGTGGTCGTTGCCGCAACGGATTATATGCGC AACTATTCAGAACAGATCCGTGCTTGGTTGCCAGATAGCCGCCCATATACCACACTAGGTACTGATGGTTATGGTCGCTC TGATACCCGCGAAAATCTGCGTAGTTTCTTCAACGTTGATGCCGCCCATATTGTTGTTGCTACCCTAAAACGCTTGGCTG ATGAAGGCGAAGTAGAAATGCGTCTGGTTAAAGACGCGATCTCTAGCTTAAATATTGATATCGATCATCCGCCTGCATGG CAACAACAGCCATATTATGACTATTCTCCAGACGCTCCAGCACCTGGCAACATCAATCCGATTCCTGTACCTGAATTTGT CGCTGAAGATGATGATGAAATCAGCAGTGAAGGTCGCGCCGAAGATCAAGCCGATGCAACCTTACTTAATAATGATGATG TCGAAGAAAAATAA
Upstream 100 bases:
>100_bases CATTAGGTAAATCGTTTGCTTACGAAAATATGTATAACTCTGTGATTTAATAATACCCTGCCACCGTGTAGGGATGACTG ATAAAAAAGGATTAGAGAAG
Downstream 100 bases:
>100_bases CCATAAGACAAGGAAATGAAAAATGGACATTAAAGCCCCCGATTTGGGTGTCGATAGCGCCGAAGTCAGTGAAATTATGG TTGCAGTTGGTGATGTCATT
Product: pyruvate dehydrogenase subunit E1
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 937; Mature: 937
Protein sequence:
>937_residues MNYYKDADSSETQEWLQAFESVIKHADKDRAQFLLKALYNMGVQEGLPFNRLDTAYINTIAVEDEPMYPGDLTIERKIRA LIRYNALAMVMRANKNDDDLGGHLASFASSATLYETGFNHFFRAASDHFGGDMIYYQGHSAPGMYARSYLEGRLTEDQLD NFRREVGGKGLSSYPHPYLMPDYWQFPTVSMGLGPIMSIYHAHVHRYMENRKLLESEGRKIWAFLGDGETDEPESLGAIS LAGREKLDNLIWVVNCNLQRLDGPVRGNGKIIQELESVFRGAGWRVIKVVWGGNWDSLLANDDTGVLKHRMEETVDGEYQ LYEARDAKFTREHFFNKYPELKEMADALTDEDISRLNRGGHDPMKVYAAFSEAMKTKGQPTVILVKTVKGYGLSTTQAVN KSHQVKKLDQEALVYFRDRFDLPFTDEQLETLPFYRPAEDSAEMKYLKGRREALGGHLPNRRSGHIPLNIPDLSIFDRVL KGSNGKEQSTTMVFVRLLSAMLKNKDIQDRVVPIVPDEARTFGLEGMFRQLGIYSAVGQKYTPEDSEALMGYKEAIDGHM LEEGINEAGAMSAWIALATSYSVNALPMIPMYIYYSMFGFQRIGDLAWAAGDCQAQGFLLGATAGRTTLNGEGLQHQDGH SQILFNVVPNCVSYDPCFGYELAVIMHDGLRRMYAEGERIYYYLTVMNENYEQPAMPEGVEEGIKRGMYLLEDNGSAQVQ LLGSGVILREVQKAARILKDEFNITSNVWSVTSFNELTRDGMACDDYNRLHPMDEERVPWITEQLAPHEGVVVAATDYMR NYSEQIRAWLPDSRPYTTLGTDGYGRSDTRENLRSFFNVDAAHIVVATLKRLADEGEVEMRLVKDAISSLNIDIDHPPAW QQQPYYDYSPDAPAPGNINPIPVPEFVAEDDDEISSEGRAEDQADATLLNNDDVEEK
Sequences:
>Translated_937_residues MNYYKDADSSETQEWLQAFESVIKHADKDRAQFLLKALYNMGVQEGLPFNRLDTAYINTIAVEDEPMYPGDLTIERKIRA LIRYNALAMVMRANKNDDDLGGHLASFASSATLYETGFNHFFRAASDHFGGDMIYYQGHSAPGMYARSYLEGRLTEDQLD NFRREVGGKGLSSYPHPYLMPDYWQFPTVSMGLGPIMSIYHAHVHRYMENRKLLESEGRKIWAFLGDGETDEPESLGAIS LAGREKLDNLIWVVNCNLQRLDGPVRGNGKIIQELESVFRGAGWRVIKVVWGGNWDSLLANDDTGVLKHRMEETVDGEYQ LYEARDAKFTREHFFNKYPELKEMADALTDEDISRLNRGGHDPMKVYAAFSEAMKTKGQPTVILVKTVKGYGLSTTQAVN KSHQVKKLDQEALVYFRDRFDLPFTDEQLETLPFYRPAEDSAEMKYLKGRREALGGHLPNRRSGHIPLNIPDLSIFDRVL KGSNGKEQSTTMVFVRLLSAMLKNKDIQDRVVPIVPDEARTFGLEGMFRQLGIYSAVGQKYTPEDSEALMGYKEAIDGHM LEEGINEAGAMSAWIALATSYSVNALPMIPMYIYYSMFGFQRIGDLAWAAGDCQAQGFLLGATAGRTTLNGEGLQHQDGH SQILFNVVPNCVSYDPCFGYELAVIMHDGLRRMYAEGERIYYYLTVMNENYEQPAMPEGVEEGIKRGMYLLEDNGSAQVQ LLGSGVILREVQKAARILKDEFNITSNVWSVTSFNELTRDGMACDDYNRLHPMDEERVPWITEQLAPHEGVVVAATDYMR NYSEQIRAWLPDSRPYTTLGTDGYGRSDTRENLRSFFNVDAAHIVVATLKRLADEGEVEMRLVKDAISSLNIDIDHPPAW QQQPYYDYSPDAPAPGNINPIPVPEFVAEDDDEISSEGRAEDQADATLLNNDDVEEK >Mature_937_residues MNYYKDADSSETQEWLQAFESVIKHADKDRAQFLLKALYNMGVQEGLPFNRLDTAYINTIAVEDEPMYPGDLTIERKIRA LIRYNALAMVMRANKNDDDLGGHLASFASSATLYETGFNHFFRAASDHFGGDMIYYQGHSAPGMYARSYLEGRLTEDQLD NFRREVGGKGLSSYPHPYLMPDYWQFPTVSMGLGPIMSIYHAHVHRYMENRKLLESEGRKIWAFLGDGETDEPESLGAIS LAGREKLDNLIWVVNCNLQRLDGPVRGNGKIIQELESVFRGAGWRVIKVVWGGNWDSLLANDDTGVLKHRMEETVDGEYQ LYEARDAKFTREHFFNKYPELKEMADALTDEDISRLNRGGHDPMKVYAAFSEAMKTKGQPTVILVKTVKGYGLSTTQAVN KSHQVKKLDQEALVYFRDRFDLPFTDEQLETLPFYRPAEDSAEMKYLKGRREALGGHLPNRRSGHIPLNIPDLSIFDRVL KGSNGKEQSTTMVFVRLLSAMLKNKDIQDRVVPIVPDEARTFGLEGMFRQLGIYSAVGQKYTPEDSEALMGYKEAIDGHM LEEGINEAGAMSAWIALATSYSVNALPMIPMYIYYSMFGFQRIGDLAWAAGDCQAQGFLLGATAGRTTLNGEGLQHQDGH SQILFNVVPNCVSYDPCFGYELAVIMHDGLRRMYAEGERIYYYLTVMNENYEQPAMPEGVEEGIKRGMYLLEDNGSAQVQ LLGSGVILREVQKAARILKDEFNITSNVWSVTSFNELTRDGMACDDYNRLHPMDEERVPWITEQLAPHEGVVVAATDYMR NYSEQIRAWLPDSRPYTTLGTDGYGRSDTRENLRSFFNVDAAHIVVATLKRLADEGEVEMRLVKDAISSLNIDIDHPPAW QQQPYYDYSPDAPAPGNINPIPVPEFVAEDDDEISSEGRAEDQADATLLNNDDVEEK
Specific function: The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components:pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydroge
COG id: COG2609
COG function: function code C; Pyruvate dehydrogenase complex, dehydrogenase (E1) component
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1786304, Length=877, Percent_Identity=56.7844925883694, Blast_Score=1035, Evalue=0.0,
Paralogues:
None
Copy number: 1140 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). 400 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 6,000 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004660 - InterPro: IPR009014 - InterPro: IPR015941 - InterPro: IPR005474 [H]
Pfam domain/function: PF00456 Transketolase_N [H]
EC number: =1.2.4.1 [H]
Molecular weight: Translated: 105824; Mature: 105824
Theoretical pI: Translated: 4.67; Mature: 4.67
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNYYKDADSSETQEWLQAFESVIKHADKDRAQFLLKALYNMGVQEGLPFNRLDTAYINTI CCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHCCCCCCCCCHHHEEEE AVEDEPMYPGDLTIERKIRALIRYNALAMVMRANKNDDDLGGHLASFASSATLYETGFNH EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHH FFRAASDHFGGDMIYYQGHSAPGMYARSYLEGRLTEDQLDNFRREVGGKGLSSYPHPYLM HHHHHHHCCCCCEEEECCCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCC PDYWQFPTVSMGLGPIMSIYHAHVHRYMENRKLLESEGRKIWAFLGDGETDEPESLGAIS CCCCCCCCCHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCEEE LAGREKLDNLIWVVNCNLQRLDGPVRGNGKIIQELESVFRGAGWRVIKVVWGGNWDSLLA ECCHHHHCCEEEEEECCHHHCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCCC NDDTGVLKHRMEETVDGEYQLYEARDAKFTREHFFNKYPELKEMADALTDEDISRLNRGG CCCHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCHHHHHHHHHCHHHHHHHHCCC HDPMKVYAAFSEAMKTKGQPTVILVKTVKGYGLSTTQAVNKSHQVKKLDQEALVYFRDRF CCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC DLPFTDEQLETLPFYRPAEDSAEMKYLKGRREALGGHLPNRRSGHIPLNIPDLSIFDRVL CCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHH KGSNGKEQSTTMVFVRLLSAMLKNKDIQDRVVPIVPDEARTFGLEGMFRQLGIYSAVGQK CCCCCCCHHHHHHHHHHHHHHHCCCCCHHCEEECCCCHHHHHHHHHHHHHHHHHHHHCCC YTPEDSEALMGYKEAIDGHMLEEGINEAGAMSAWIALATSYSVNALPMIPMYIYYSMFGF CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH QRIGDLAWAAGDCQAQGFLLGATAGRTTLNGEGLQHQDGHSQILFNVVPNCVSYDPCFGY HHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHCCCCCCCC ELAVIMHDGLRRMYAEGERIYYYLTVMNENYEQPAMPEGVEEGIKRGMYLLEDNGSAQVQ EEHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCHHHHHHHHCCEEEEECCCCEEEE LLGSGVILREVQKAARILKDEFNITSNVWSVTSFNELTRDGMACDDYNRLHPMDEERVPW EECCCHHHHHHHHHHHHHHHHCCCCCCEEECCCHHHHHHCCCCCCCCCCCCCCCCCCCCH ITEQLAPHEGVVVAATDYMRNYSEQIRAWLPDSRPYTTLGTDGYGRSDTRENLRSFFNVD HHHHCCCCCCEEEEEHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCHHHHHHHHHHCCC AAHIVVATLKRLADEGEVEMRLVKDAISSLNIDIDHPPAWQQQPYYDYSPDAPAPGNINP HHHHHHHHHHHHHCCCCHHHHHHHHHHHHCEECCCCCCCCCCCCCCCCCCCCCCCCCCCC IPVPEFVAEDDDEISSEGRAEDQADATLLNNDDVEEK CCCCHHHCCCCHHHHCCCCCCCCCCCEEECCCCCCCC >Mature Secondary Structure MNYYKDADSSETQEWLQAFESVIKHADKDRAQFLLKALYNMGVQEGLPFNRLDTAYINTI CCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHCCCCCCCCCHHHEEEE AVEDEPMYPGDLTIERKIRALIRYNALAMVMRANKNDDDLGGHLASFASSATLYETGFNH EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHH FFRAASDHFGGDMIYYQGHSAPGMYARSYLEGRLTEDQLDNFRREVGGKGLSSYPHPYLM HHHHHHHCCCCCEEEECCCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCC PDYWQFPTVSMGLGPIMSIYHAHVHRYMENRKLLESEGRKIWAFLGDGETDEPESLGAIS CCCCCCCCCHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCEEE LAGREKLDNLIWVVNCNLQRLDGPVRGNGKIIQELESVFRGAGWRVIKVVWGGNWDSLLA ECCHHHHCCEEEEEECCHHHCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCCC NDDTGVLKHRMEETVDGEYQLYEARDAKFTREHFFNKYPELKEMADALTDEDISRLNRGG CCCHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCHHHHHHHHHCHHHHHHHHCCC HDPMKVYAAFSEAMKTKGQPTVILVKTVKGYGLSTTQAVNKSHQVKKLDQEALVYFRDRF CCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC DLPFTDEQLETLPFYRPAEDSAEMKYLKGRREALGGHLPNRRSGHIPLNIPDLSIFDRVL CCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHH KGSNGKEQSTTMVFVRLLSAMLKNKDIQDRVVPIVPDEARTFGLEGMFRQLGIYSAVGQK CCCCCCCHHHHHHHHHHHHHHHCCCCCHHCEEECCCCHHHHHHHHHHHHHHHHHHHHCCC YTPEDSEALMGYKEAIDGHMLEEGINEAGAMSAWIALATSYSVNALPMIPMYIYYSMFGF CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH QRIGDLAWAAGDCQAQGFLLGATAGRTTLNGEGLQHQDGHSQILFNVVPNCVSYDPCFGY HHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHCCCCCCCC ELAVIMHDGLRRMYAEGERIYYYLTVMNENYEQPAMPEGVEEGIKRGMYLLEDNGSAQVQ EEHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCHHHHHHHHCCEEEEECCCCEEEE LLGSGVILREVQKAARILKDEFNITSNVWSVTSFNELTRDGMACDDYNRLHPMDEERVPW EECCCHHHHHHHHHHHHHHHHCCCCCCEEECCCHHHHHHCCCCCCCCCCCCCCCCCCCCH ITEQLAPHEGVVVAATDYMRNYSEQIRAWLPDSRPYTTLGTDGYGRSDTRENLRSFFNVD HHHHCCCCCCEEEEEHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCHHHHHHHHHHCCC AAHIVVATLKRLADEGEVEMRLVKDAISSLNIDIDHPPAWQQQPYYDYSPDAPAPGNINP HHHHHHHHHHHHHCCCCHHHHHHHHHHHHCEECCCCCCCCCCCCCCCCCCCCCCCCCCCC IPVPEFVAEDDDEISSEGRAEDQADATLLNNDDVEEK CCCCHHHCCCCHHHHCCCCCCCCCCCEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9171401; 10984043 [H]