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The map label for this gene is yoaB [C]

Identifier: 93005847

GI number: 93005847

Start: 1220309

End: 1220647

Strand: Direct

Name: yoaB [C]

Synonym: Pcryo_1019

Alternate gene names: 93005847

Gene position: 1220309-1220647 (Clockwise)

Preceding gene: 93005846

Following gene: 93005848

Centisome position: 39.88

GC content: 45.13

Gene sequence:

>339_bases
ATGCAAAAGCTCCATAGTAATCAACGTATGAGTAAAATTGTGGTTCATAACCAGACTGTTTATCTATGTGGTCAAGTAGG
TAACGCTGAAGATGACATCAAAGCCCAAACCTTAACTTGCCTAGAGAAGATCGAAAGCTTGTTGCAAGAAGTCGGTAGTG
ACAAATCAAAGCTGCTAATGGCGACTGTCTGGGTGAAAAGCATGTCGGATTTTGCGGCAATGAATGAAGTATGGGATAAG
TGGTTCGAAGGCGTACAGCCGCCAGCTCGTGCTTGCGGTGAATCTGCTTTGGCACGTCCTGAGCTGTTGGTTGAGATTAC
TGCTATCGCTGCTGAGTAA

Upstream 100 bases:

>100_bases
CAAACCCTTTAGCGCTGATCGCTTTTCTCGCTAAGTAAGATTTCATAAAACTTGAGTCATTTATACATTTTAAAGCATTA
AAAATTAAGGATAATAATCT

Downstream 100 bases:

>100_bases
ATACCAGTACCTGCTACTTAAAACTGAATAATAATGAGAGGGCGTGATATGACTATCACGCCCTTTTTGATGAGCGACGC
ATGCAAATAGTCTATAATTA

Product: endoribonuclease L-PSP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 112; Mature: 112

Protein sequence:

>112_residues
MQKLHSNQRMSKIVVHNQTVYLCGQVGNAEDDIKAQTLTCLEKIESLLQEVGSDKSKLLMATVWVKSMSDFAAMNEVWDK
WFEGVQPPARACGESALARPELLVEITAIAAE

Sequences:

>Translated_112_residues
MQKLHSNQRMSKIVVHNQTVYLCGQVGNAEDDIKAQTLTCLEKIESLLQEVGSDKSKLLMATVWVKSMSDFAAMNEVWDK
WFEGVQPPARACGESALARPELLVEITAIAAE
>Mature_112_residues
MQKLHSNQRMSKIVVHNQTVYLCGQVGNAEDDIKAQTLTCLEKIESLLQEVGSDKSKLLMATVWVKSMSDFAAMNEVWDK
WFEGVQPPARACGESALARPELLVEITAIAAE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Escherichia coli, GI87081979, Length=109, Percent_Identity=36.697247706422, Blast_Score=83, Evalue=3e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 12421; Mature: 12421

Theoretical pI: Translated: 4.86; Mature: 4.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
7.1 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
7.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKLHSNQRMSKIVVHNQTVYLCGQVGNAEDDIKAQTLTCLEKIESLLQEVGSDKSKLLM
CCCCCHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
ATVWVKSMSDFAAMNEVWDKWFEGVQPPARACGESALARPELLVEITAIAAE
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCHHHCCCCHHHHHHHHHHCC
>Mature Secondary Structure
MQKLHSNQRMSKIVVHNQTVYLCGQVGNAEDDIKAQTLTCLEKIESLLQEVGSDKSKLLM
CCCCCHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
ATVWVKSMSDFAAMNEVWDKWFEGVQPPARACGESALARPELLVEITAIAAE
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCHHHCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]