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The map label for this gene is yfjR [H]

Identifier: 93005752

GI number: 93005752

Start: 1096434

End: 1097336

Strand: Reverse

Name: yfjR [H]

Synonym: Pcryo_0924

Alternate gene names: 93005752

Gene position: 1097336-1096434 (Counterclockwise)

Preceding gene: 93005759

Following gene: 93005751

Centisome position: 35.86

GC content: 36.21

Gene sequence:

>903_bases
ATGAAATTGAGAAAACATGAGAGGCTTGCGTATCGACTATCTGACATTATCGTTAGACTTAACGATGGTGAGCGTTTGAA
TATTTTTGAATTAGCAGACACCTATAAGGTCTCTATCCGCACCTTAAAGAGAGATTTTCAGGATCGTTTGACCTTACTAG
AGCTCTATGAAGAAGGTCCACAGTTTTATCGCTTGCACCCTAGTAATATTGGATATCTAGATATAGCAGATATTCAGCGT
TTTGCTAGTTTTGCTAGCGTACAAGACTTACTACCGAAAATTGACCGTCAGTTTTTCCAAGAAAAACTTAACCAAAGCAT
TTTCGTTAAAGGTTTCGCTTATGAAAATATAAGCGAACGTACAGACGACTTTAGAACTATTAACCAAGCCATTACTAATC
ACCAATATATTGAGTTTTATTATCGCAAGGTCAGTGACTATGCTTCCAATAATAGTAAACATTACTTATTAGAACCTTAT
CACCTGCTTAATAAAAATGGTATTTGGTATGTAGTAGGTCGCCTTCATGGACAAACAAGAACATTTTGCTTTACGCAAAT
GACCCAGTTACATATAAATACTGAGACCTTCCAATGCTCTGAGGATATCAAAAAAGAAACTCTTGATACGGATAGCTTAT
TCTTTGGCAATCAAATCAGTGAGATTATCTTGCAGGTCGATGCAAAGGTCGCTGGATATTTTGAGCGGCGTGACTTATTG
CCCAATCAAAATCTAGTACAAAGACTTGACAGTGGGGATTTGCTACTAGCATGTAAAAACATACATCCGAGAGAAGTAGT
TCCTATTGTTCAGTACTGGATACCTTATATACGTATCATTAGTCCGAGCGAAATTCAGAAAGATTTAGAAATCACTATAA
GTAAGTATTTAATAGGAAACTAG

Upstream 100 bases:

>100_bases
TTATAGTGCATAATTGCATTTTTGTTATTTTTGTTATTTTTGTTATTTTTTAGTAACTTAATGCAACTGAAAGCAGAGTT
ACCTTGCAAGTTGAGTGATT

Downstream 100 bases:

>100_bases
ATTGTGGCAAAAAACAAGAGAAGTAAGTCAGTAGTGAGTTTTTTCGAAATTATTGTTGTAGCGACGATGAGTTCAGGAAA
ATCCACACTTATTAATTCAA

Product: transcriptional regulator-like

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 300

Protein sequence:

>300_residues
MKLRKHERLAYRLSDIIVRLNDGERLNIFELADTYKVSIRTLKRDFQDRLTLLELYEEGPQFYRLHPSNIGYLDIADIQR
FASFASVQDLLPKIDRQFFQEKLNQSIFVKGFAYENISERTDDFRTINQAITNHQYIEFYYRKVSDYASNNSKHYLLEPY
HLLNKNGIWYVVGRLHGQTRTFCFTQMTQLHINTETFQCSEDIKKETLDTDSLFFGNQISEIILQVDAKVAGYFERRDLL
PNQNLVQRLDSGDLLLACKNIHPREVVPIVQYWIPYIRIISPSEIQKDLEITISKYLIGN

Sequences:

>Translated_300_residues
MKLRKHERLAYRLSDIIVRLNDGERLNIFELADTYKVSIRTLKRDFQDRLTLLELYEEGPQFYRLHPSNIGYLDIADIQR
FASFASVQDLLPKIDRQFFQEKLNQSIFVKGFAYENISERTDDFRTINQAITNHQYIEFYYRKVSDYASNNSKHYLLEPY
HLLNKNGIWYVVGRLHGQTRTFCFTQMTQLHINTETFQCSEDIKKETLDTDSLFFGNQISEIILQVDAKVAGYFERRDLL
PNQNLVQRLDSGDLLLACKNIHPREVVPIVQYWIPYIRIISPSEIQKDLEITISKYLIGN
>Mature_300_residues
MKLRKHERLAYRLSDIIVRLNDGERLNIFELADTYKVSIRTLKRDFQDRLTLLELYEEGPQFYRLHPSNIGYLDIADIQR
FASFASVQDLLPKIDRQFFQEKLNQSIFVKGFAYENISERTDDFRTINQAITNHQYIEFYYRKVSDYASNNSKHYLLEPY
HLLNKNGIWYVVGRLHGQTRTFCFTQMTQLHINTETFQCSEDIKKETLDTDSLFFGNQISEIILQVDAKVAGYFERRDLL
PNQNLVQRLDSGDLLLACKNIHPREVVPIVQYWIPYIRIISPSEIQKDLEITISKYLIGN

Specific function: Unknown

COG id: COG2378

COG function: function code K; Predicted transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788988, Length=200, Percent_Identity=30, Blast_Score=80, Evalue=2e-16,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001034
- InterPro:   IPR018356
- InterPro:   IPR011991 [H]

Pfam domain/function: PF08220 HTH_DeoR [H]

EC number: NA

Molecular weight: Translated: 35494; Mature: 35494

Theoretical pI: Translated: 6.96; Mature: 6.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLRKHERLAYRLSDIIVRLNDGERLNIFELADTYKVSIRTLKRDFQDRLTLLELYEEGP
CCCCHHHHHHHHHHHHEEEECCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCC
QFYRLHPSNIGYLDIADIQRFASFASVQDLLPKIDRQFFQEKLNQSIFVKGFAYENISER
CEEEECCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCHHHH
TDDFRTINQAITNHQYIEFYYRKVSDYASNNSKHYLLEPYHLLNKNGIWYVVGRLHGQTR
HHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCEEEECCHHHHCCCCEEEEEEEECCCCH
TFCFTQMTQLHINTETFQCSEDIKKETLDTDSLFFGNQISEIILQVDAKVAGYFERRDLL
HHHHEEHEEEEECCCCEECHHHHHHHHCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHCCC
PNQNLVQRLDSGDLLLACKNIHPREVVPIVQYWIPYIRIISPSEIQKDLEITISKYLIGN
CCCHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHEEECHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKLRKHERLAYRLSDIIVRLNDGERLNIFELADTYKVSIRTLKRDFQDRLTLLELYEEGP
CCCCHHHHHHHHHHHHEEEECCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCC
QFYRLHPSNIGYLDIADIQRFASFASVQDLLPKIDRQFFQEKLNQSIFVKGFAYENISER
CEEEECCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCHHHH
TDDFRTINQAITNHQYIEFYYRKVSDYASNNSKHYLLEPYHLLNKNGIWYVVGRLHGQTR
HHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCEEEECCHHHHCCCCEEEEEEEECCCCH
TFCFTQMTQLHINTETFQCSEDIKKETLDTDSLFFGNQISEIILQVDAKVAGYFERRDLL
HHHHEEHEEEEECCCCEECHHHHHHHHCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHCCC
PNQNLVQRLDSGDLLLACKNIHPREVVPIVQYWIPYIRIISPSEIQKDLEITISKYLIGN
CCCHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHEEECHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]