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The map label for this gene is yfdE [H]

Identifier: 93005646

GI number: 93005646

Start: 963828

End: 965099

Strand: Direct

Name: yfdE [H]

Synonym: Pcryo_0816

Alternate gene names: 93005646

Gene position: 963828-965099 (Clockwise)

Preceding gene: 93005645

Following gene: 93005648

Centisome position: 31.5

GC content: 48.35

Gene sequence:

>1272_bases
ATGACTGTCACTACAACCACACAACAGCCTGAACAAGCCAACTTTACTAATAATGCTACCGCTGATATTGCGACTGATGC
TGTATCAAAAGGCGCATTGCATGGAATCAAAGTGCTTGATTTGTCGCGGGTATTGGCAGGTCCTTCTTGCACCCAAGTGC
TCGCCGACCTTGGTGCCGATGTGATCAAGGTTGAGCGTCCACATATTGGTGATGAAACCCGTCATTGGGCGCCGCCAAAA
TTCAGCGATGATACATCCGCTTATTACGCTACCATTAATCGCAATAAAAAATCCCTCACGGTAGATATTACGACGTCTGC
TGGACAAACCATCATTAAGCAGCTCGCTGAAACAAGCGATATCGTGGTAGAAAACTTTAAAGTTGGCGGTCTGAAAAAAT
ACGGTTTGGACTATGAGAGTCTAAAGCAAAGCAATCCACGTCTGATTTATGCCTCATTAACGGGCTTTGGGCAAACAGGT
CCCGATGCTGAGCTTCCGGGCTATGACTATATTATTCAAGGTTTGTCAGGGCTAATGAGCATCACTGGACCTACTGATGG
CGAACCACATAAAGTTGGCGTGGCAGTGGTAGATTTATTTGCAGGCTTGCAGCTGACGATTGGTATTCAAGCGGCGTTAA
TAGCGCGCCAGCATACTGGAATAGGTCAACATGTCGATGTCGCGTTACTAGACAGTGCGTTGGCAATGCTCGCCAATGTT
GGTATGAATCATTTGGCATCTGGTGAGGTACCGCCAAGATTGGGCAATGGTCACCCTAACATCGTTCCTTATCAAGTGTT
TGCCGGTGCAGGGGAGGAGCATTTCATTTTAGCCTGCGGTAATGACAGTCAATTTGCCAGACTATGCCAGATGCTATCCG
TAGAGTGGCATACTGACAGTCGTTTTGCGACCAACCCCCAACGCGTTACCCATCGTGAGCTGATTTGTGAGTGGCTTATA
AACGCATTTGCCGAGCATCCACGTGCATATTGGCTTACGCGCTTGCATGAGGCGGGTATTCCTTGCGGTCCTATTCATAA
TGTTGCAGAAGCTTTGGCTATGCCGCAAGCGCTGGCACGAGGGATGATTGTTAGTTTTGCCGCGCAAGGCAGTCCGGTAA
GAGCGCTTGGTAGCCCCATTAAACTCTCAGGCTCGCCTGTCACCTATCGTACACCACCACCGCGACTCAGTGAACATACT
GACAGCACGCTTAGTAATTTGGGCTATGACAGCGATATGATCGCCAAATTGAAAGCTGATGGGATTGTTTGA

Upstream 100 bases:

>100_bases
CTGGTTTAGCAGTAGTTCTAAAGAATTAGATAAATGAGGACTAGGCACTGTCTTATCATTTTTATCATTATAAAAAATAC
GTTATCAATAAGGGATTATT

Downstream 100 bases:

>100_bases
TTAAACCCCTGATTGTCTTGGTCGAAGTCGGTTATTACCTGCAAAAGCTCAATGACAATTTGCAGGCATTTTCATCAGGG
CTTATAGTCAGTCCTAAATA

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 423; Mature: 422

Protein sequence:

>423_residues
MTVTTTTQQPEQANFTNNATADIATDAVSKGALHGIKVLDLSRVLAGPSCTQVLADLGADVIKVERPHIGDETRHWAPPK
FSDDTSAYYATINRNKKSLTVDITTSAGQTIIKQLAETSDIVVENFKVGGLKKYGLDYESLKQSNPRLIYASLTGFGQTG
PDAELPGYDYIIQGLSGLMSITGPTDGEPHKVGVAVVDLFAGLQLTIGIQAALIARQHTGIGQHVDVALLDSALAMLANV
GMNHLASGEVPPRLGNGHPNIVPYQVFAGAGEEHFILACGNDSQFARLCQMLSVEWHTDSRFATNPQRVTHRELICEWLI
NAFAEHPRAYWLTRLHEAGIPCGPIHNVAEALAMPQALARGMIVSFAAQGSPVRALGSPIKLSGSPVTYRTPPPRLSEHT
DSTLSNLGYDSDMIAKLKADGIV

Sequences:

>Translated_423_residues
MTVTTTTQQPEQANFTNNATADIATDAVSKGALHGIKVLDLSRVLAGPSCTQVLADLGADVIKVERPHIGDETRHWAPPK
FSDDTSAYYATINRNKKSLTVDITTSAGQTIIKQLAETSDIVVENFKVGGLKKYGLDYESLKQSNPRLIYASLTGFGQTG
PDAELPGYDYIIQGLSGLMSITGPTDGEPHKVGVAVVDLFAGLQLTIGIQAALIARQHTGIGQHVDVALLDSALAMLANV
GMNHLASGEVPPRLGNGHPNIVPYQVFAGAGEEHFILACGNDSQFARLCQMLSVEWHTDSRFATNPQRVTHRELICEWLI
NAFAEHPRAYWLTRLHEAGIPCGPIHNVAEALAMPQALARGMIVSFAAQGSPVRALGSPIKLSGSPVTYRTPPPRLSEHT
DSTLSNLGYDSDMIAKLKADGIV
>Mature_422_residues
TVTTTTQQPEQANFTNNATADIATDAVSKGALHGIKVLDLSRVLAGPSCTQVLADLGADVIKVERPHIGDETRHWAPPKF
SDDTSAYYATINRNKKSLTVDITTSAGQTIIKQLAETSDIVVENFKVGGLKKYGLDYESLKQSNPRLIYASLTGFGQTGP
DAELPGYDYIIQGLSGLMSITGPTDGEPHKVGVAVVDLFAGLQLTIGIQAALIARQHTGIGQHVDVALLDSALAMLANVG
MNHLASGEVPPRLGNGHPNIVPYQVFAGAGEEHFILACGNDSQFARLCQMLSVEWHTDSRFATNPQRVTHRELICEWLIN
AFAEHPRAYWLTRLHEAGIPCGPIHNVAEALAMPQALARGMIVSFAAQGSPVRALGSPIKLSGSPVTYRTPPPRLSEHTD
STLSNLGYDSDMIAKLKADGIV

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=394, Percent_Identity=40.8629441624365, Blast_Score=293, Evalue=2e-79,
Organism=Homo sapiens, GI300863124, Length=420, Percent_Identity=39.2857142857143, Blast_Score=281, Evalue=1e-75,
Organism=Homo sapiens, GI300863126, Length=394, Percent_Identity=35.7868020304569, Blast_Score=239, Evalue=4e-63,
Organism=Homo sapiens, GI13376042, Length=420, Percent_Identity=35.4761904761905, Blast_Score=234, Evalue=1e-61,
Organism=Homo sapiens, GI42794625, Length=397, Percent_Identity=27.7078085642317, Blast_Score=139, Evalue=4e-33,
Organism=Homo sapiens, GI266456254, Length=393, Percent_Identity=27.4809160305344, Blast_Score=139, Evalue=4e-33,
Organism=Homo sapiens, GI266458393, Length=205, Percent_Identity=37.0731707317073, Blast_Score=123, Evalue=3e-28,
Organism=Homo sapiens, GI266458397, Length=205, Percent_Identity=37.0731707317073, Blast_Score=123, Evalue=3e-28,
Organism=Homo sapiens, GI266458395, Length=146, Percent_Identity=39.7260273972603, Blast_Score=103, Evalue=4e-22,
Organism=Homo sapiens, GI42822893, Length=146, Percent_Identity=39.7260273972603, Blast_Score=102, Evalue=5e-22,
Organism=Escherichia coli, GI87082093, Length=361, Percent_Identity=40.1662049861496, Blast_Score=282, Evalue=2e-77,
Organism=Escherichia coli, GI1788717, Length=421, Percent_Identity=32.3040380047506, Blast_Score=176, Evalue=2e-45,
Organism=Escherichia coli, GI1786222, Length=410, Percent_Identity=27.8048780487805, Blast_Score=116, Evalue=4e-27,
Organism=Caenorhabditis elegans, GI32564160, Length=190, Percent_Identity=29.4736842105263, Blast_Score=85, Evalue=7e-17,
Organism=Caenorhabditis elegans, GI115535051, Length=217, Percent_Identity=30.4147465437788, Blast_Score=82, Evalue=5e-16,
Organism=Drosophila melanogaster, GI24648431, Length=404, Percent_Identity=44.5544554455446, Blast_Score=318, Evalue=5e-87,
Organism=Drosophila melanogaster, GI24585488, Length=203, Percent_Identity=31.5270935960591, Blast_Score=102, Evalue=3e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 45302; Mature: 45171

Theoretical pI: Translated: 6.34; Mature: 6.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVTTTTQQPEQANFTNNATADIATDAVSKGALHGIKVLDLSRVLAGPSCTQVLADLGAD
CEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHEEHHHHHCCCHHHHHHHHCCCC
VIKVERPHIGDETRHWAPPKFSDDTSAYYATINRNKKSLTVDITTSAGQTIIKQLAETSD
EEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEEEECCCHHHHHHHHHHHHH
IVVENFKVGGLKKYGLDYESLKQSNPRLIYASLTGFGQTGPDAELPGYDYIIQGLSGLMS
HEEECCCCCCCHHHCCCHHHHHCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHEE
ITGPTDGEPHKVGVAVVDLFAGLQLTIGIQAALIARQHTGIGQHVDVALLDSALAMLANV
ECCCCCCCCCCHHHHHHHHHCCCEEEECHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHC
GMNHLASGEVPPRLGNGHPNIVPYQVFAGAGEEHFILACGNDSQFARLCQMLSVEWHTDS
CHHHCCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEECCCHHHHHHHHHHHCEECCCC
RFATNPQRVTHRELICEWLINAFAEHPRAYWLTRLHEAGIPCGPIHNVAEALAMPQALAR
CCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
GMIVSFAAQGSPVRALGSPIKLSGSPVTYRTPPPRLSEHTDSTLSNLGYDSDMIAKLKAD
HHHHEECCCCCCHHHCCCCEEECCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHCC
GIV
CCC
>Mature Secondary Structure 
TVTTTTQQPEQANFTNNATADIATDAVSKGALHGIKVLDLSRVLAGPSCTQVLADLGAD
EECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHEEHHHHHCCCHHHHHHHHCCCC
VIKVERPHIGDETRHWAPPKFSDDTSAYYATINRNKKSLTVDITTSAGQTIIKQLAETSD
EEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEEEECCCHHHHHHHHHHHHH
IVVENFKVGGLKKYGLDYESLKQSNPRLIYASLTGFGQTGPDAELPGYDYIIQGLSGLMS
HEEECCCCCCCHHHCCCHHHHHCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHEE
ITGPTDGEPHKVGVAVVDLFAGLQLTIGIQAALIARQHTGIGQHVDVALLDSALAMLANV
ECCCCCCCCCCHHHHHHHHHCCCEEEECHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHC
GMNHLASGEVPPRLGNGHPNIVPYQVFAGAGEEHFILACGNDSQFARLCQMLSVEWHTDS
CHHHCCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEECCCHHHHHHHHHHHCEECCCC
RFATNPQRVTHRELICEWLINAFAEHPRAYWLTRLHEAGIPCGPIHNVAEALAMPQALAR
CCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
GMIVSFAAQGSPVRALGSPIKLSGSPVTYRTPPPRLSEHTDSTLSNLGYDSDMIAKLKAD
HHHHEECCCCCCHHHCCCCEEECCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHCC
GIV
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]