| Definition | Psychrobacter cryohalolentis K5 chromosome, complete genome. |
|---|---|
| Accession | NC_007969 |
| Length | 3,059,876 |
Click here to switch to the map view.
The map label for this gene is dppD [H]
Identifier: 93005586
GI number: 93005586
Start: 889138
End: 890199
Strand: Reverse
Name: dppD [H]
Synonym: Pcryo_0756
Alternate gene names: 93005586
Gene position: 890199-889138 (Counterclockwise)
Preceding gene: 93005587
Following gene: 93005585
Centisome position: 29.09
GC content: 48.68
Gene sequence:
>1062_bases ATGAACGACTCTCAAGTAAATAGCCCAATAGCAAATAACCTTGCCACAGACAACCCATTACTCCTCGATATTGAGCATCT ATCGGTGACTTTTGGAGAAGGAGCACGAGCATTCCGTGCGGTCGATGATGTCTCTTTAAAAATAAAACAAGGAGAAGTCG TCGCGGTTGTCGGTGAATCAGGCTCTGGTAAATCGGTCACTATGATGGCACTGATGGGTTTATTACCCTCTTCTGCCACT GTCGTTGCTGATCGTCTTAACTTTGATGACAAGAATCTCCTCACCATGCCAGCAAAACAAAAGCGCAAGATTATCGGCAA AGATATCTCGATGATATTTCAAAACGCCATGTCATGCCTGAATCCAAGCTTTACGGTCGAGATGCAAATGGGAGAAGTAT TAACTACCCATCTTGGCTTGCGCGGCGCAGCAGTACGGCAGCGTCTGTTAGAGTTATTAGAGCTGGTTGAGATGCCAGAT GCTAAGAATCGCCTACGTGTCTATCCGCACCAACTTTCAGGTGGTATGAGTCAACGGGTCATGATTGCGATGGCACTGGC TTGCGAGCCAAAACTGCTTATCGCTGATGAGCCGACGACCGCTCTCGACGTTACCGTTCAGGCTCAAATCATGGATTTAC TCAGTCGCCTGCAACGTGAAAAGCAAATGGCAATGGTGCTCATCACTCATGACTTGGGCTTAGTCGCACAAAACGCTCGT GATGTCGCTGTCATGTATGCCGGTCAAGTGGTCGAGACCAGTACAGTGCCAGAGATATTCCAAAAACCTGCGCACCCTTA TACCGAAGCCCTACTGCAAGCGATTCCTGAACTGGCTGTTGGACAAGATAGATTAAATAGCTTACCAGGTGTGGTGCCAA GCCAATATGACAGGCCTACAGGCTGTCTGCTCTCTCCTCGCTGTCCCTATAAAGAGCCGGCTTGTGAGGTGCCACCACCT ATCTTAACAACCCCAAATGGCGAAGTCCGCTGTATTCACGCCACCCTTCCCGAACATCCTACTCGGACTACTCAAACCGC TACGATGGAGTCTGAAATATGA
Upstream 100 bases:
>100_bases TTTGGCCCGGTGTGGCGATTTTCTTAGCCGCATTGTCCATCAATCTAACGGGTGACGGTCTGCGTGATGCCTTAGATCCA AAATTGAAGCAGGTATCTTA
Downstream 100 bases:
>100_bases GTAATAAAATCGTCTTAAAGGCAGATAACTTACATAAGCACTATCAAGTGTCTCTAGGCTTAGGAAAAGGCAAAGCGTTT GTTAAGGCATTAAATGGCAT
Product: oligopeptide/dipeptide ABC transporter, ATP-binding protein-like protein
Products: ADP; phosphate; dipeptides [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 353; Mature: 353
Protein sequence:
>353_residues MNDSQVNSPIANNLATDNPLLLDIEHLSVTFGEGARAFRAVDDVSLKIKQGEVVAVVGESGSGKSVTMMALMGLLPSSAT VVADRLNFDDKNLLTMPAKQKRKIIGKDISMIFQNAMSCLNPSFTVEMQMGEVLTTHLGLRGAAVRQRLLELLELVEMPD AKNRLRVYPHQLSGGMSQRVMIAMALACEPKLLIADEPTTALDVTVQAQIMDLLSRLQREKQMAMVLITHDLGLVAQNAR DVAVMYAGQVVETSTVPEIFQKPAHPYTEALLQAIPELAVGQDRLNSLPGVVPSQYDRPTGCLLSPRCPYKEPACEVPPP ILTTPNGEVRCIHATLPEHPTRTTQTATMESEI
Sequences:
>Translated_353_residues MNDSQVNSPIANNLATDNPLLLDIEHLSVTFGEGARAFRAVDDVSLKIKQGEVVAVVGESGSGKSVTMMALMGLLPSSAT VVADRLNFDDKNLLTMPAKQKRKIIGKDISMIFQNAMSCLNPSFTVEMQMGEVLTTHLGLRGAAVRQRLLELLELVEMPD AKNRLRVYPHQLSGGMSQRVMIAMALACEPKLLIADEPTTALDVTVQAQIMDLLSRLQREKQMAMVLITHDLGLVAQNAR DVAVMYAGQVVETSTVPEIFQKPAHPYTEALLQAIPELAVGQDRLNSLPGVVPSQYDRPTGCLLSPRCPYKEPACEVPPP ILTTPNGEVRCIHATLPEHPTRTTQTATMESEI >Mature_353_residues MNDSQVNSPIANNLATDNPLLLDIEHLSVTFGEGARAFRAVDDVSLKIKQGEVVAVVGESGSGKSVTMMALMGLLPSSAT VVADRLNFDDKNLLTMPAKQKRKIIGKDISMIFQNAMSCLNPSFTVEMQMGEVLTTHLGLRGAAVRQRLLELLELVEMPD AKNRLRVYPHQLSGGMSQRVMIAMALACEPKLLIADEPTTALDVTVQAQIMDLLSRLQREKQMAMVLITHDLGLVAQNAR DVAVMYAGQVVETSTVPEIFQKPAHPYTEALLQAIPELAVGQDRLNSLPGVVPSQYDRPTGCLLSPRCPYKEPACEVPPP ILTTPNGEVRCIHATLPEHPTRTTQTATMESEI
Specific function: Part of the binding-protein-dependent transport system for dipeptides. Probably responsible for energy coupling to the transport system [H]
COG id: COG0444
COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI116734710, Length=233, Percent_Identity=26.6094420600858, Blast_Score=80, Evalue=4e-15, Organism=Homo sapiens, GI21536376, Length=221, Percent_Identity=27.6018099547511, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI47078218, Length=222, Percent_Identity=26.5765765765766, Blast_Score=66, Evalue=4e-11, Organism=Homo sapiens, GI45446740, Length=222, Percent_Identity=26.5765765765766, Blast_Score=66, Evalue=4e-11, Organism=Homo sapiens, GI156105685, Length=227, Percent_Identity=27.7533039647577, Blast_Score=66, Evalue=6e-11, Organism=Homo sapiens, GI153792144, Length=263, Percent_Identity=23.9543726235741, Blast_Score=65, Evalue=7e-11, Organism=Homo sapiens, GI255708477, Length=257, Percent_Identity=24.9027237354086, Blast_Score=65, Evalue=8e-11, Organism=Homo sapiens, GI105990541, Length=222, Percent_Identity=23.4234234234234, Blast_Score=65, Evalue=9e-11, Organism=Escherichia coli, GI1789963, Length=303, Percent_Identity=56.7656765676568, Blast_Score=359, Evalue=1e-100, Organism=Escherichia coli, GI48994883, Length=310, Percent_Identity=44.5161290322581, Blast_Score=268, Evalue=3e-73, Organism=Escherichia coli, GI1787548, Length=319, Percent_Identity=42.6332288401254, Blast_Score=264, Evalue=6e-72, Organism=Escherichia coli, GI1787759, Length=312, Percent_Identity=41.6666666666667, Blast_Score=245, Evalue=3e-66, Organism=Escherichia coli, GI145693107, Length=280, Percent_Identity=46.7857142857143, Blast_Score=237, Evalue=7e-64, Organism=Escherichia coli, GI1788506, Length=257, Percent_Identity=49.8054474708171, Blast_Score=227, Evalue=1e-60, Organism=Escherichia coli, GI1787500, Length=325, Percent_Identity=39.0769230769231, Blast_Score=207, Evalue=9e-55, Organism=Escherichia coli, GI1789962, Length=331, Percent_Identity=36.5558912386707, Blast_Score=175, Evalue=3e-45, Organism=Escherichia coli, GI1787758, Length=310, Percent_Identity=34.1935483870968, Blast_Score=164, Evalue=1e-41, Organism=Escherichia coli, GI1789890, Length=234, Percent_Identity=41.8803418803419, Blast_Score=160, Evalue=2e-40, Organism=Escherichia coli, GI48994997, Length=259, Percent_Identity=33.2046332046332, Blast_Score=142, Evalue=4e-35, Organism=Escherichia coli, GI1789891, Length=243, Percent_Identity=38.2716049382716, Blast_Score=134, Evalue=1e-32, Organism=Escherichia coli, GI1786398, Length=276, Percent_Identity=32.9710144927536, Blast_Score=126, Evalue=2e-30, Organism=Escherichia coli, GI1787547, Length=261, Percent_Identity=29.8850574712644, Blast_Score=122, Evalue=4e-29, Organism=Escherichia coli, GI1789032, Length=282, Percent_Identity=31.5602836879433, Blast_Score=119, Evalue=4e-28, Organism=Escherichia coli, GI87081791, Length=280, Percent_Identity=32.8571428571429, Blast_Score=110, Evalue=1e-25, Organism=Escherichia coli, GI1788450, Length=308, Percent_Identity=27.9220779220779, Blast_Score=106, Evalue=2e-24, Organism=Escherichia coli, GI1788761, Length=244, Percent_Identity=28.6885245901639, Blast_Score=105, Evalue=4e-24, Organism=Escherichia coli, GI1787089, Length=218, Percent_Identity=33.9449541284404, Blast_Score=105, Evalue=6e-24, Organism=Escherichia coli, GI1786703, Length=222, Percent_Identity=34.2342342342342, Blast_Score=104, Evalue=8e-24, Organism=Escherichia coli, GI1787029, Length=256, Percent_Identity=29.296875, Blast_Score=102, Evalue=3e-23, Organism=Escherichia coli, GI1788225, Length=240, Percent_Identity=33.3333333333333, Blast_Score=102, Evalue=3e-23, Organism=Escherichia coli, GI87081834, Length=227, Percent_Identity=33.0396475770925, Blast_Score=100, Evalue=1e-22, Organism=Escherichia coli, GI1787370, Length=237, Percent_Identity=29.535864978903, Blast_Score=100, Evalue=2e-22, Organism=Escherichia coli, GI87081709, Length=253, Percent_Identity=27.2727272727273, Blast_Score=98, Evalue=9e-22, Organism=Escherichia coli, GI1787712, Length=254, Percent_Identity=28.740157480315, Blast_Score=97, Evalue=2e-21, Organism=Escherichia coli, GI1787105, Length=224, Percent_Identity=34.375, Blast_Score=97, Evalue=2e-21, Organism=Escherichia coli, GI1790467, Length=250, Percent_Identity=28.4, Blast_Score=94, Evalue=1e-20, Organism=Escherichia coli, GI1790162, Length=260, Percent_Identity=28.0769230769231, Blast_Score=94, Evalue=2e-20, Organism=Escherichia coli, GI1789672, Length=260, Percent_Identity=27.3076923076923, Blast_Score=92, Evalue=4e-20, Organism=Escherichia coli, GI1786872, Length=256, Percent_Identity=31.640625, Blast_Score=92, Evalue=5e-20, Organism=Escherichia coli, GI48994943, Length=271, Percent_Identity=27.6752767527675, Blast_Score=91, Evalue=1e-19, Organism=Escherichia coli, GI87082267, Length=244, Percent_Identity=27.4590163934426, Blast_Score=86, Evalue=3e-18, Organism=Escherichia coli, GI1786319, Length=242, Percent_Identity=26.0330578512397, Blast_Score=86, Evalue=3e-18, Organism=Escherichia coli, GI1788644, Length=260, Percent_Identity=30, Blast_Score=86, Evalue=4e-18, Organism=Escherichia coli, GI1786563, Length=240, Percent_Identity=31.25, Blast_Score=85, Evalue=7e-18, Organism=Escherichia coli, GI1788165, Length=239, Percent_Identity=28.0334728033473, Blast_Score=82, Evalue=4e-17, Organism=Escherichia coli, GI1787164, Length=211, Percent_Identity=32.7014218009479, Blast_Score=81, Evalue=8e-17, Organism=Escherichia coli, GI1786345, Length=244, Percent_Identity=26.2295081967213, Blast_Score=81, Evalue=1e-16, Organism=Escherichia coli, GI1789873, Length=231, Percent_Identity=26.8398268398268, Blast_Score=78, Evalue=1e-15, Organism=Escherichia coli, GI1786803, Length=244, Percent_Identity=26.6393442622951, Blast_Score=77, Evalue=2e-15, Organism=Escherichia coli, GI1786253, Length=221, Percent_Identity=28.9592760180996, Blast_Score=76, Evalue=4e-15, Organism=Escherichia coli, GI1789991, Length=239, Percent_Identity=28.8702928870293, Blast_Score=75, Evalue=7e-15, Organism=Escherichia coli, GI1790739, Length=256, Percent_Identity=26.953125, Blast_Score=72, Evalue=5e-14, Organism=Escherichia coli, GI48995001, Length=244, Percent_Identity=28.2786885245902, Blast_Score=71, Evalue=1e-13, Organism=Escherichia coli, GI1787112, Length=237, Percent_Identity=27.8481012658228, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI1789586, Length=270, Percent_Identity=27.7777777777778, Blast_Score=69, Evalue=6e-13, Organism=Escherichia coli, GI1788053, Length=194, Percent_Identity=27.8350515463918, Blast_Score=69, Evalue=7e-13, Organism=Escherichia coli, GI1790544, Length=247, Percent_Identity=29.1497975708502, Blast_Score=68, Evalue=9e-13, Organism=Escherichia coli, GI87081782, Length=242, Percent_Identity=23.9669421487603, Blast_Score=67, Evalue=2e-12, Organism=Escherichia coli, GI1789593, Length=238, Percent_Identity=26.0504201680672, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI1786698, Length=222, Percent_Identity=25.2252252252252, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1788472, Length=270, Percent_Identity=24.8148148148148, Blast_Score=62, Evalue=5e-11, Organism=Escherichia coli, GI1790534, Length=218, Percent_Identity=27.9816513761468, Blast_Score=61, Evalue=9e-11, Organism=Caenorhabditis elegans, GI212646699, Length=252, Percent_Identity=27.7777777777778, Blast_Score=79, Evalue=5e-15, Organism=Caenorhabditis elegans, GI25146777, Length=243, Percent_Identity=27.1604938271605, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17558664, Length=226, Percent_Identity=30.0884955752212, Blast_Score=72, Evalue=4e-13, Organism=Caenorhabditis elegans, GI193202349, Length=236, Percent_Identity=26.271186440678, Blast_Score=72, Evalue=4e-13, Organism=Caenorhabditis elegans, GI193209708, Length=239, Percent_Identity=28.0334728033473, Blast_Score=72, Evalue=4e-13, Organism=Caenorhabditis elegans, GI17510237, Length=259, Percent_Identity=23.5521235521236, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI193211015, Length=221, Percent_Identity=26.2443438914027, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI71996809, Length=221, Percent_Identity=26.2443438914027, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI193211017, Length=221, Percent_Identity=26.2443438914027, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI17541710, Length=231, Percent_Identity=29.004329004329, Blast_Score=67, Evalue=2e-11, Organism=Caenorhabditis elegans, GI71983516, Length=234, Percent_Identity=27.3504273504274, Blast_Score=67, Evalue=2e-11, Organism=Caenorhabditis elegans, GI71983510, Length=234, Percent_Identity=27.3504273504274, Blast_Score=67, Evalue=2e-11, Organism=Caenorhabditis elegans, GI71983523, Length=234, Percent_Identity=27.3504273504274, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17569143, Length=226, Percent_Identity=27.8761061946903, Blast_Score=64, Evalue=9e-11, Organism=Saccharomyces cerevisiae, GI6324985, Length=261, Percent_Identity=28.735632183908, Blast_Score=82, Evalue=1e-16, Organism=Saccharomyces cerevisiae, GI6323217, Length=229, Percent_Identity=27.5109170305677, Blast_Score=72, Evalue=2e-13, Organism=Saccharomyces cerevisiae, GI6322640, Length=282, Percent_Identity=24.113475177305, Blast_Score=64, Evalue=5e-11, Organism=Drosophila melanogaster, GI24643674, Length=263, Percent_Identity=25.0950570342205, Blast_Score=77, Evalue=2e-14, Organism=Drosophila melanogaster, GI281362751, Length=236, Percent_Identity=22.8813559322034, Blast_Score=75, Evalue=9e-14, Organism=Drosophila melanogaster, GI24666092, Length=237, Percent_Identity=26.5822784810127, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI24650853, Length=236, Percent_Identity=22.8813559322034, Blast_Score=73, Evalue=4e-13, Organism=Drosophila melanogaster, GI24650855, Length=236, Percent_Identity=22.8813559322034, Blast_Score=72, Evalue=5e-13, Organism=Drosophila melanogaster, GI28574150, Length=195, Percent_Identity=26.1538461538462, Blast_Score=72, Evalue=7e-13, Organism=Drosophila melanogaster, GI116007328, Length=213, Percent_Identity=25.8215962441315, Blast_Score=71, Evalue=1e-12, Organism=Drosophila melanogaster, GI24582014, Length=309, Percent_Identity=23.9482200647249, Blast_Score=69, Evalue=6e-12, Organism=Drosophila melanogaster, GI24582012, Length=309, Percent_Identity=23.9482200647249, Blast_Score=69, Evalue=6e-12, Organism=Drosophila melanogaster, GI21357907, Length=264, Percent_Identity=27.2727272727273, Blast_Score=68, Evalue=1e-11, Organism=Drosophila melanogaster, GI24659289, Length=237, Percent_Identity=25.7383966244726, Blast_Score=67, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR010066 - InterPro: IPR013563 [H]
Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]
EC number: NA
Molecular weight: Translated: 38441; Mature: 38441
Theoretical pI: Translated: 5.42; Mature: 5.42
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 5.1 %Met (Translated Protein) 6.8 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 5.1 %Met (Mature Protein) 6.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNDSQVNSPIANNLATDNPLLLDIEHLSVTFGEGARAFRAVDDVSLKIKQGEVVAVVGES CCCCCCCCCHHHCCCCCCCEEEEEEEEEEEECCCCHHHHHHCCCEEEEECCCEEEEECCC GSGKSVTMMALMGLLPSSATVVADRLNFDDKNLLTMPAKQKRKIIGKDISMIFQNAMSCL CCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHC NPSFTVEMQMGEVLTTHLGLRGAAVRQRLLELLELVEMPDAKNRLRVYPHQLSGGMSQRV CCCEEEEEEHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCEEECCHHHCCCCHHHH MIAMALACEPKLLIADEPTTALDVTVQAQIMDLLSRLQREKQMAMVLITHDLGLVAQNAR HHHHHHHCCCEEEEECCCCCEEEEEHHHHHHHHHHHHHHHHHHEEEEEEECCCHHHCCCC DVAVMYAGQVVETSTVPEIFQKPAHPYTEALLQAIPELAVGQDRLNSLPGVVPSQYDRPT CEEEEEECCEEECCCCHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCC GCLLSPRCPYKEPACEVPPPILTTPNGEVRCIHATLPEHPTRTTQTATMESEI CCEECCCCCCCCCCCCCCCCEEECCCCCEEEEEECCCCCCCCCCEECCCCCCC >Mature Secondary Structure MNDSQVNSPIANNLATDNPLLLDIEHLSVTFGEGARAFRAVDDVSLKIKQGEVVAVVGES CCCCCCCCCHHHCCCCCCCEEEEEEEEEEEECCCCHHHHHHCCCEEEEECCCEEEEECCC GSGKSVTMMALMGLLPSSATVVADRLNFDDKNLLTMPAKQKRKIIGKDISMIFQNAMSCL CCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHC NPSFTVEMQMGEVLTTHLGLRGAAVRQRLLELLELVEMPDAKNRLRVYPHQLSGGMSQRV CCCEEEEEEHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCEEECCHHHCCCCHHHH MIAMALACEPKLLIADEPTTALDVTVQAQIMDLLSRLQREKQMAMVLITHDLGLVAQNAR HHHHHHHCCCEEEEECCCCCEEEEEHHHHHHHHHHHHHHHHHHEEEEEEECCCHHHCCCC DVAVMYAGQVVETSTVPEIFQKPAHPYTEALLQAIPELAVGQDRLNSLPGVVPSQYDRPT CEEEEEECCEEECCCCHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCC GCLLSPRCPYKEPACEVPPPILTTPNGEVRCIHATLPEHPTRTTQTATMESEI CCEECCCCCCCCCCCCCCCCEEECCCCCEEEEEECCCCCCCCCCEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; dipeptides [Periplasm]; H2O [C]
Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 7542800; 8550458 [H]