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The map label for this gene is ybeY [C]

Identifier: 93005420

GI number: 93005420

Start: 704209

End: 704676

Strand: Reverse

Name: ybeY [C]

Synonym: Pcryo_0590

Alternate gene names: 93005420

Gene position: 704676-704209 (Counterclockwise)

Preceding gene: 93005421

Following gene: 93005417

Centisome position: 23.03

GC content: 44.44

Gene sequence:

>468_bases
ATGCTGTCTGTAATGGCGGCGACACTTAACTATATCGATGAGCAGGTAAAAGGTGGTCTGATACTGCCATACTTTGAAGA
TATCGATGCTGAGCAGTGGCAAGAGAAGATTAAGGTGCTCGATATTTATATTACTGATGAAGTCGAAGGTCGCGAGCTGA
ATTTAGAAGCCCGTCAAAAGGATTATGCAACCAATATCCTCTCTTATCCAAGCGACCTGCCAGCAGCCATTATTGGACTG
ATGCCAACGCTACCGCTTGGAGAGCTAATCATTTGCCATGCGGTGATGATACGTGAAGCAGCAGAGCAAAATAAAGAGGC
TGTGCAGCATATTAGCCACTTATTAATTCATGGAGTACTGCATTTACTCGGTTTCGATCATGAGCTCGGGCAAGCCGAGC
AAGATGAGATGGAGCGCTTTGAGATTGAAATTTTGGCAGGGCTCAATATTCCAAACCCTTATAACTAA

Upstream 100 bases:

>100_bases
TGATAATTCTAATGAGAACAATAGCTTAGACGCGCTTGATATTAGTGCCAGTGAGCTTATCGATGACCAGACACTTGATA
GTTTTTACAGTCGGGAGCAG

Downstream 100 bases:

>100_bases
TCTTTTTTCGTTAGTAGTTTTTGTGCCTGATCCATCTGATTAATCATCTGGTCAAGTCCTTTCACATGGACATTACGCTG
CGGGAACGGAATATCAATTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 155; Mature: 155

Protein sequence:

>155_residues
MLSVMAATLNYIDEQVKGGLILPYFEDIDAEQWQEKIKVLDIYITDEVEGRELNLEARQKDYATNILSYPSDLPAAIIGL
MPTLPLGELIICHAVMIREAAEQNKEAVQHISHLLIHGVLHLLGFDHELGQAEQDEMERFEIEILAGLNIPNPYN

Sequences:

>Translated_155_residues
MLSVMAATLNYIDEQVKGGLILPYFEDIDAEQWQEKIKVLDIYITDEVEGRELNLEARQKDYATNILSYPSDLPAAIIGL
MPTLPLGELIICHAVMIREAAEQNKEAVQHISHLLIHGVLHLLGFDHELGQAEQDEMERFEIEILAGLNIPNPYN
>Mature_155_residues
MLSVMAATLNYIDEQVKGGLILPYFEDIDAEQWQEKIKVLDIYITDEVEGRELNLEARQKDYATNILSYPSDLPAAIIGL
MPTLPLGELIICHAVMIREAAEQNKEAVQHISHLLIHGVLHLLGFDHELGQAEQDEMERFEIEILAGLNIPNPYN

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity [H]

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family [H]

Homologues:

Organism=Escherichia coli, GI1786880, Length=123, Percent_Identity=43.0894308943089, Blast_Score=82, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036 [H]

Pfam domain/function: PF02130 UPF0054 [H]

EC number: NA

Molecular weight: Translated: 17520; Mature: 17520

Theoretical pI: Translated: 4.14; Mature: 4.14

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSVMAATLNYIDEQVKGGLILPYFEDIDAEQWQEKIKVLDIYITDEVEGRELNLEARQK
CHHHHHHHHHHHHHHHCCCEECCHHHCCCHHHHHHHHHEEEEEEECCCCCCEECHHHHHH
DYATNILSYPSDLPAAIIGLMPTLPLGELIICHAVMIREAAEQNKEAVQHISHLLIHGVL
HHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HLLGFDHELGQAEQDEMERFEIEILAGLNIPNPYN
HHHCCCCCCCCCCHHHHHHHHHHHEECCCCCCCCC
>Mature Secondary Structure
MLSVMAATLNYIDEQVKGGLILPYFEDIDAEQWQEKIKVLDIYITDEVEGRELNLEARQK
CHHHHHHHHHHHHHHHCCCEECCHHHCCCHHHHHHHHHEEEEEEECCCCCCEECHHHHHH
DYATNILSYPSDLPAAIIGLMPTLPLGELIICHAVMIREAAEQNKEAVQHISHLLIHGVL
HHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HLLGFDHELGQAEQDEMERFEIEILAGLNIPNPYN
HHHCCCCCCCCCCHHHHHHHHHHHEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA