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The map label for this gene is rbn [C]

Identifier: 93005366

GI number: 93005366

Start: 633844

End: 635421

Strand: Reverse

Name: rbn [C]

Synonym: Pcryo_0536

Alternate gene names: 93005366

Gene position: 635421-633844 (Counterclockwise)

Preceding gene: 93005369

Following gene: 93005365

Centisome position: 20.77

GC content: 40.24

Gene sequence:

>1578_bases
ATGGTCGTTATGGAAAATCTATTAAAAAAAATACCTTTTTTACACCAACGTTGGTTTCAGTTCTTGCGTTTTTTGACGCG
GCACTTTTTTGAGGATAATTGTCAGCAAAAAGCTGCATCATTAACCTATACGACTTTGTTGTCGATTGTGCCTATATTAA
CCGTACTGCTGATGATTTTGTCTTCAGTACCAGCACTTGCTTCAGTTAGGGCGCAGATTTATGAAGTCATTTATAGCAAC
TTGCTGCCACAATCGAGCTTGCAAGTCAGTAAATATATCAATAACTTCGCTGAAAAATCATCAAACCTCACCATCATTGG
GGCGATGTTCTTACTTTTTACTACCATCATGACTTTGACCACCATTGAGCGCGCTTTCAACCAAATATGGCGCGTAGAAG
ATCGTTCTGGCGGCATGAGAAGTATGTTGCGCTATTGGACCATCGTCACGTTGGGACCCTTAGTATTAGGTACGGCATTC
ATCGCCTCAAGTGCTGTCCAAAGCCTGAGTTTGTTAAATAGACAAATTGGCGGCTATGGTATTGATTGGTCGTTTTGGGT
ACAGATAGTATCGATTGCAGTTACGATCGCTGGTTTTATCAGTATGTATTGGTTTATTCCAAAAGCACGAGTACCAGCAA
AAAATGCTGCGATTGCAGGTGTCTTTGTAGCGATTGTCTTTGAGCTGATGAAGCATCTATTTGGTACAGTGATGGCGAAC
TTTACGAGCTATGAAGCGATCTATGGCGCATTTGCTGCGTTGCCGATTTTCTTATTATGGATATATCTGTCATGGAATTT
GATTTTATTAGGGGTTGAGATCAGCTATACCCTAACGATATTTGAGACAAAAGAGGTTTATCCGCGCCATCCATTTTTAA
GCTTGCTTGATATGTTAAATCTTGTTTATACCCATCACTTAAAAGGCGAAGCGGTGAGCGAACAAGCGCTACGCAATGTC
CTCGGACGTAAAGAGCTGCCAAAATGGTATACCTATATCAATTATCTGCAAGACAGCAACTTGATTACCATGACAGAAGA
TGAGCACTATGTACTCAAAAGAGATTTGAGCAAAATGACCTTGTGGGATTTTTATCGTACCCTGCCTTATCCATTGCCTA
TCAAAGATGAACTTGATGAGATGAGCCTAGAAGACCAAAAACCTTGGCTTAGCTTATTGGTTAATCGCTTTGAAAATACC
GAAGCCTATGCCAAAGCACAATTGAATGTGCCGCTCGGTGCTATTTTTGCCCATAGTGAACCACGTAAGAAAACCTCTGA
TGACAAATCGACTAACCATAAAAACGAAAAGCTTCAAAAAGAGAAAAATGAGTTTTTTAGGAAATCTAGCGCGGCTACCT
CCAGTCATTTATTACAAGAGCCTCTAGATAGTAAGGATGACATGCCGAAGTTTGAACCAGTCGCTTATGATAAGGATAGC
GACATAGAGCGTGACGAGCACAATCGTGAAATTCTTATTCCACAAGACAGCATTGACGATAAAAATCAAATAAACGCTAA
TTTTTCTAATGCTAAACGCGATATTATTACTGAAGCCGATAACCCAAGATCGATTTGA

Upstream 100 bases:

>100_bases
TTAACTACTCAATACAATCTAGTGCATATTGACACAATTAACGCGCAGATTCAGACAGACCATGTTTGCTACACTATCCG
CACTCTATTATCCTTGCTAG

Downstream 100 bases:

>100_bases
GTGTTTAAATAACAAGACCTCTCTATAAAAAACAAGTTCCAAATGGAGCTTATTTTTTATCCTGTTTTTAATGGATTATT
TGCAGTGAATCAGGTAATTT

Product: ribonuclease BN

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 525; Mature: 525

Protein sequence:

>525_residues
MVVMENLLKKIPFLHQRWFQFLRFLTRHFFEDNCQQKAASLTYTTLLSIVPILTVLLMILSSVPALASVRAQIYEVIYSN
LLPQSSLQVSKYINNFAEKSSNLTIIGAMFLLFTTIMTLTTIERAFNQIWRVEDRSGGMRSMLRYWTIVTLGPLVLGTAF
IASSAVQSLSLLNRQIGGYGIDWSFWVQIVSIAVTIAGFISMYWFIPKARVPAKNAAIAGVFVAIVFELMKHLFGTVMAN
FTSYEAIYGAFAALPIFLLWIYLSWNLILLGVEISYTLTIFETKEVYPRHPFLSLLDMLNLVYTHHLKGEAVSEQALRNV
LGRKELPKWYTYINYLQDSNLITMTEDEHYVLKRDLSKMTLWDFYRTLPYPLPIKDELDEMSLEDQKPWLSLLVNRFENT
EAYAKAQLNVPLGAIFAHSEPRKKTSDDKSTNHKNEKLQKEKNEFFRKSSAATSSHLLQEPLDSKDDMPKFEPVAYDKDS
DIERDEHNREILIPQDSIDDKNQINANFSNAKRDIITEADNPRSI

Sequences:

>Translated_525_residues
MVVMENLLKKIPFLHQRWFQFLRFLTRHFFEDNCQQKAASLTYTTLLSIVPILTVLLMILSSVPALASVRAQIYEVIYSN
LLPQSSLQVSKYINNFAEKSSNLTIIGAMFLLFTTIMTLTTIERAFNQIWRVEDRSGGMRSMLRYWTIVTLGPLVLGTAF
IASSAVQSLSLLNRQIGGYGIDWSFWVQIVSIAVTIAGFISMYWFIPKARVPAKNAAIAGVFVAIVFELMKHLFGTVMAN
FTSYEAIYGAFAALPIFLLWIYLSWNLILLGVEISYTLTIFETKEVYPRHPFLSLLDMLNLVYTHHLKGEAVSEQALRNV
LGRKELPKWYTYINYLQDSNLITMTEDEHYVLKRDLSKMTLWDFYRTLPYPLPIKDELDEMSLEDQKPWLSLLVNRFENT
EAYAKAQLNVPLGAIFAHSEPRKKTSDDKSTNHKNEKLQKEKNEFFRKSSAATSSHLLQEPLDSKDDMPKFEPVAYDKDS
DIERDEHNREILIPQDSIDDKNQINANFSNAKRDIITEADNPRSI
>Mature_525_residues
MVVMENLLKKIPFLHQRWFQFLRFLTRHFFEDNCQQKAASLTYTTLLSIVPILTVLLMILSSVPALASVRAQIYEVIYSN
LLPQSSLQVSKYINNFAEKSSNLTIIGAMFLLFTTIMTLTTIERAFNQIWRVEDRSGGMRSMLRYWTIVTLGPLVLGTAF
IASSAVQSLSLLNRQIGGYGIDWSFWVQIVSIAVTIAGFISMYWFIPKARVPAKNAAIAGVFVAIVFELMKHLFGTVMAN
FTSYEAIYGAFAALPIFLLWIYLSWNLILLGVEISYTLTIFETKEVYPRHPFLSLLDMLNLVYTHHLKGEAVSEQALRNV
LGRKELPKWYTYINYLQDSNLITMTEDEHYVLKRDLSKMTLWDFYRTLPYPLPIKDELDEMSLEDQKPWLSLLVNRFENT
EAYAKAQLNVPLGAIFAHSEPRKKTSDDKSTNHKNEKLQKEKNEFFRKSSAATSSHLLQEPLDSKDDMPKFEPVAYDKDS
DIERDEHNREILIPQDSIDDKNQINANFSNAKRDIITEADNPRSI

Specific function: 3' To 5' Exoribonuclease Necessary For 3'Maturation Of tRNA Molecules. [C]

COG id: COG1295

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0761 family [H]

Homologues:

Organism=Escherichia coli, GI1790319, Length=263, Percent_Identity=32.6996197718631, Blast_Score=152, Evalue=5e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017039
- InterPro:   IPR004664 [H]

Pfam domain/function: PF03631 Ribonuclease_BN [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 60428; Mature: 60428

Theoretical pI: Translated: 6.93; Mature: 6.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCCCCCCCCEEECCCCCCCCCHHCCCCHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure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CCCCCCCCCEEECCCCCCCCCHHCCCCHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA